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The map label for this gene is ybbI [C]

Identifier: 77456888

GI number: 77456888

Start: 774998

End: 775411

Strand: Reverse

Name: ybbI [C]

Synonym: Pfl01_0660

Alternate gene names: 77456888

Gene position: 775411-774998 (Counterclockwise)

Preceding gene: 77456889

Following gene: 77456885

Centisome position: 12.04

GC content: 64.49

Gene sequence:

>414_bases
ATGAACATCGGCCAAGCGGCCCGCCACAGTGGCCTGAGCGCGAAGATGATCCGTTATTACGAGTCGATCGGTCTGCTCAA
GGCTGCCCATCGCACCGACAGCGGCTATCGCATCTACGGCGACGATGACCTGCACACGCTGGCATTCATCAAGCGTTCGC
GGGACCTGGGCTTTTCGCTGGAGGAAGTCGGCAAGCTGCTGACCCTCTGGCAGGATCGCCAGCGCGCCAGCGCCGATGTG
AAGGCCCTGGCCCGCCAGCACATCGACGAGCTGAATCAGAAGATCCGCGAACTCGGCGAACTGCGCGACACCCTGCAGGA
TCTGGTCGAGCACTGCCACGGCGACCATCGCCCGGACTGTCCGATCCTCAAGGAACTGGCGTCGGGCTGCTGCGCGCAAC
CCGCGCGCGCCTGA

Upstream 100 bases:

>100_bases
CGGTGCTGGCCGGTGCGGCGATGGCCCTGTCGAGCGTCAGCGTGGTGAGCAATGCGCTACTGTTGAAAACCTGGAAACCC
GAGGATCTGGAGGACAACCG

Downstream 100 bases:

>100_bases
GCAGCAGGATTTTCATCGACAGCACTGTGGCGAGGGGAATGCCGTGGAACAGCAGCACCACGGCACCCGGCGCCCACCAC
TCATAGAACGGTGCGGCGAT

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MNIGQAARHSGLSAKMIRYYESIGLLKAAHRTDSGYRIYGDDDLHTLAFIKRSRDLGFSLEEVGKLLTLWQDRQRASADV
KALARQHIDELNQKIRELGELRDTLQDLVEHCHGDHRPDCPILKELASGCCAQPARA

Sequences:

>Translated_137_residues
MNIGQAARHSGLSAKMIRYYESIGLLKAAHRTDSGYRIYGDDDLHTLAFIKRSRDLGFSLEEVGKLLTLWQDRQRASADV
KALARQHIDELNQKIRELGELRDTLQDLVEHCHGDHRPDCPILKELASGCCAQPARA
>Mature_137_residues
MNIGQAARHSGLSAKMIRYYESIGLLKAAHRTDSGYRIYGDDDLHTLAFIKRSRDLGFSLEEVGKLLTLWQDRQRASADV
KALARQHIDELNQKIRELGELRDTLQDLVEHCHGDHRPDCPILKELASGCCAQPARA

Specific function: Copper responsive transcription regulator [C]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786695, Length=131, Percent_Identity=43.5114503816794, Blast_Score=117, Evalue=3e-28,
Organism=Escherichia coli, GI1789687, Length=130, Percent_Identity=33.0769230769231, Blast_Score=77, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011789
- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 15451; Mature: 15451

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIGQAARHSGLSAKMIRYYESIGLLKAAHRTDSGYRIYGDDDLHTLAFIKRSRDLGFSL
CCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCCH
EEVGKLLTLWQDRQRASADVKALARQHIDELNQKIRELGELRDTLQDLVEHCHGDHRPDC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PILKELASGCCAQPARA
HHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNIGQAARHSGLSAKMIRYYESIGLLKAAHRTDSGYRIYGDDDLHTLAFIKRSRDLGFSL
CCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCCCH
EEVGKLLTLWQDRQRASADVKALARQHIDELNQKIRELGELRDTLQDLVEHCHGDHRPDC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PILKELASGCCAQPARA
HHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]