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The map label for this gene is hofQ [C]

Identifier: 77456876

GI number: 77456876

Start: 759052

End: 760320

Strand: Reverse

Name: hofQ [C]

Synonym: Pfl01_0648

Alternate gene names: 77456876

Gene position: 760320-759052 (Counterclockwise)

Preceding gene: 77456877

Following gene: 77456875

Centisome position: 11.81

GC content: 63.59

Gene sequence:

>1269_bases
ATGCGCAAACGCTTTACGCCCCTGTTCCACTGGCTGCAGTTTTCCTTGCTGAGCGTGGCTTCGATCGGCAGCGCGGCCGC
CGCCACCGGCAACTGCGCTGCGCTTGCGCCGCTACCGGCCGTGCTGGAAGTCGGTGAAGGCCTGCAACAGGCCGTGCAAT
CGCCGGTGGCGATCACTCGGGTGGCCGTGGGCGATCCGAAGATCGCCGATGTGCGCGTGACCGGCGATCAGGGTGTGTTG
CTCACCGGCGTCGGCCCCGGCGCCACCACGTTGATGATCTGGACCGCCTGCGCCAGCACACCGCGTCAAAGCATGGTGTT
CGTGCAGGGCAAGGCCAGTGCGGCGATGACTGCGGCGGCGCTGCCGTCCAGCAGCGAACCGAACCTGCCCTCGCAAGTGC
AGACAGACATCCGCTTCGTCGAAGTCAGCCGCACCAAACTCAAGGAAGCGGGTACGTCGATCTATGGCAAAGGCTCCAAC
AATTTTCTGTTCGGCGCCCCGGGCACCGTGCCGAACACCGGGGTCACGCCGGGTGTGGTTCCGTTGCTCAACATCGACCC
ACGCATCGCCGCGCCGAGCATTCCGCTGGCCAACGACATGTTCAACATCGTCTGGGGCGGTGGCAGCAGCAAGTTCCTCG
GCATCGTCAACGCGCTGGAAGGCAGCGGTTTCGCCTACACCCTCGCGCGGCCAAGCCTGGTTGCCTTGAGCGGACAGAGT
GCGAGTTTCCTCGCCGGTGGCGAGGTGCCGATCCCGGTGCCCAGCGCCAACAGCAACAGCTACTCCATCGAGTACAAGGA
ATTCGGTATCCGCCTGACCCTGACCCCGACCGTGGTCAGCAACGACCGGATCGCCCTCAAGGTCGCCCCGGAAGTCAGTG
AGCTGGACTACAACAACGGCGTGACCATCGGCGGCACCAAAGTGCCGGCCTTCACCATTCGCCGCACCGACACCAGCATC
TCCCTGGCAGACGGCGAAAGCTTCGTCATCAGCGGCCTGATCAGTACCCGCAATGCCTCGGAGGTGAACAAGTTTCCGGG
GCTGGGCGACATTCCGGTACTCGGCGCGTTTTTCCGCAACTCGTCGATCAACCGCGAAGAACGCGAGCTGCTGATGATCG
TCACCCCGCACCTGGTGCAGCCGCTGGCCGTCAACGCGCCATTGCCGTCGTTGCCCGGCGAGAAACTGCGCAATTACGAC
CCGAACTGGTATCGCCTGTACTTCCTGGAAAACGGCAACTTCGATAAACGCAGCGGGTTATCGCAATGA

Upstream 100 bases:

>100_bases
GGTCGCCAGTCAGACCGTTCCAGGAAAACCGGCCGTGGAAGTGATTCGCGGCACCGAATCCGCCGAACCCACGCACTGAA
TCGAGCAAGGATGCACCTCC

Downstream 100 bases:

>100_bases
GCCAGAGCCTGAGCCAGACCTTTCTCGCCATCACCCGCAACACCACCGATCTCGAGTGGCTGCAAGGCGCGCTGGCGCCG
CTGGGCCAGGTGGTCAGCGC

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MRKRFTPLFHWLQFSLLSVASIGSAAAATGNCAALAPLPAVLEVGEGLQQAVQSPVAITRVAVGDPKIADVRVTGDQGVL
LTGVGPGATTLMIWTACASTPRQSMVFVQGKASAAMTAAALPSSSEPNLPSQVQTDIRFVEVSRTKLKEAGTSIYGKGSN
NFLFGAPGTVPNTGVTPGVVPLLNIDPRIAAPSIPLANDMFNIVWGGGSSKFLGIVNALEGSGFAYTLARPSLVALSGQS
ASFLAGGEVPIPVPSANSNSYSIEYKEFGIRLTLTPTVVSNDRIALKVAPEVSELDYNNGVTIGGTKVPAFTIRRTDTSI
SLADGESFVISGLISTRNASEVNKFPGLGDIPVLGAFFRNSSINREERELLMIVTPHLVQPLAVNAPLPSLPGEKLRNYD
PNWYRLYFLENGNFDKRSGLSQ

Sequences:

>Translated_422_residues
MRKRFTPLFHWLQFSLLSVASIGSAAAATGNCAALAPLPAVLEVGEGLQQAVQSPVAITRVAVGDPKIADVRVTGDQGVL
LTGVGPGATTLMIWTACASTPRQSMVFVQGKASAAMTAAALPSSSEPNLPSQVQTDIRFVEVSRTKLKEAGTSIYGKGSN
NFLFGAPGTVPNTGVTPGVVPLLNIDPRIAAPSIPLANDMFNIVWGGGSSKFLGIVNALEGSGFAYTLARPSLVALSGQS
ASFLAGGEVPIPVPSANSNSYSIEYKEFGIRLTLTPTVVSNDRIALKVAPEVSELDYNNGVTIGGTKVPAFTIRRTDTSI
SLADGESFVISGLISTRNASEVNKFPGLGDIPVLGAFFRNSSINREERELLMIVTPHLVQPLAVNAPLPSLPGEKLRNYD
PNWYRLYFLENGNFDKRSGLSQ
>Mature_422_residues
MRKRFTPLFHWLQFSLLSVASIGSAAAATGNCAALAPLPAVLEVGEGLQQAVQSPVAITRVAVGDPKIADVRVTGDQGVL
LTGVGPGATTLMIWTACASTPRQSMVFVQGKASAAMTAAALPSSSEPNLPSQVQTDIRFVEVSRTKLKEAGTSIYGKGSN
NFLFGAPGTVPNTGVTPGVVPLLNIDPRIAAPSIPLANDMFNIVWGGGSSKFLGIVNALEGSGFAYTLARPSLVALSGQS
ASFLAGGEVPIPVPSANSNSYSIEYKEFGIRLTLTPTVVSNDRIALKVAPEVSELDYNNGVTIGGTKVPAFTIRRTDTSI
SLADGESFVISGLISTRNASEVNKFPGLGDIPVLGAFFRNSSINREERELLMIVTPHLVQPLAVNAPLPSLPGEKLRNYD
PNWYRLYFLENGNFDKRSGLSQ

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=180, Percent_Identity=32.7777777777778, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87082242, Length=209, Percent_Identity=31.5789473684211, Blast_Score=89, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 44459; Mature: 44459

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKRFTPLFHWLQFSLLSVASIGSAAAATGNCAALAPLPAVLEVGEGLQQAVQSPVAITR
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCEEEEE
VAVGDPKIADVRVTGDQGVLLTGVGPGATTLMIWTACASTPRQSMVFVQGKASAAMTAAA
EECCCCCEEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCCEEEEECCCCHHEEEEE
LPSSSEPNLPSQVQTDIRFVEVSRTKLKEAGTSIYGKGSNNFLFGAPGTVPNTGVTPGVV
CCCCCCCCCCHHHHCCEEEEEEHHHHHHHCCCEEEECCCCCEEEECCCCCCCCCCCCCEE
PLLNIDPRIAAPSIPLANDMFNIVWGGGSSKFLGIVNALEGSGFAYTLARPSLVALSGQS
EEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEHHCCCCEEEEECCCEEEEECCCC
ASFLAGGEVPIPVPSANSNSYSIEYKEFGIRLTLTPTVVSNDRIALKVAPEVSELDYNNG
CEEEECCCCCCCCCCCCCCCEEEEEHHEEEEEEEECEEECCCEEEEEECCCHHHCCCCCC
VTIGGTKVPAFTIRRTDTSISLADGESFVISGLISTRNASEVNKFPGLGDIPVLGAFFRN
EEECCCCCCEEEEEECCCEEEEECCCEEEEEEECCCCCCHHHHHCCCCCCCHHHHHHHHC
SSINREERELLMIVTPHLVQPLAVNAPLPSLPGEKLRNYDPNWYRLYFLENGNFDKRSGL
CCCCCCCCEEEEEECCHHCCCEEECCCCCCCCCHHHHCCCCCEEEEEEEECCCCHHHCCC
SQ
CC
>Mature Secondary Structure
MRKRFTPLFHWLQFSLLSVASIGSAAAATGNCAALAPLPAVLEVGEGLQQAVQSPVAITR
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCEEEEE
VAVGDPKIADVRVTGDQGVLLTGVGPGATTLMIWTACASTPRQSMVFVQGKASAAMTAAA
EECCCCCEEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCCEEEEECCCCHHEEEEE
LPSSSEPNLPSQVQTDIRFVEVSRTKLKEAGTSIYGKGSNNFLFGAPGTVPNTGVTPGVV
CCCCCCCCCCHHHHCCEEEEEEHHHHHHHCCCEEEECCCCCEEEECCCCCCCCCCCCCEE
PLLNIDPRIAAPSIPLANDMFNIVWGGGSSKFLGIVNALEGSGFAYTLARPSLVALSGQS
EEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEHHCCCCEEEEECCCEEEEECCCC
ASFLAGGEVPIPVPSANSNSYSIEYKEFGIRLTLTPTVVSNDRIALKVAPEVSELDYNNG
CEEEECCCCCCCCCCCCCCCEEEEEHHEEEEEEEECEEECCCEEEEEECCCHHHCCCCCC
VTIGGTKVPAFTIRRTDTSISLADGESFVISGLISTRNASEVNKFPGLGDIPVLGAFFRN
EEECCCCCCEEEEEECCCEEEEECCCEEEEEEECCCCCCHHHHHCCCCCCCHHHHHHHHC
SSINREERELLMIVTPHLVQPLAVNAPLPSLPGEKLRNYDPNWYRLYFLENGNFDKRSGL
CCCCCCCCEEEEEECCHHCCCEEECCCCCCCCCHHHHCCCCCEEEEEEEECCCCHHHCCC
SQ
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]