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The map label for this gene is cbiD

Identifier: 77456830

GI number: 77456830

Start: 694234

End: 695331

Strand: Reverse

Name: cbiD

Synonym: Pfl01_0602

Alternate gene names: 77456830

Gene position: 695331-694234 (Counterclockwise)

Preceding gene: 77456831

Following gene: 77456829

Centisome position: 10.8

GC content: 65.12

Gene sequence:

>1098_bases
ATGCGTGACGAAACCGCCGAACAACCCGCGCCCCTGCGCAGCGGCCTGACTACCGGCAGCTGCGCCACGGCCACCAGCCT
CGCCGCCGCGCGCCTGTTGCTCGGTGGAGTGGTGGCGGACGCCGTGCAGATCGTCTTGCCCAAGGGCAAGCAGGTGCAGA
TGCGCCTGGAGTTCTGTCGGCTGACCAAGGACGGCGCCGAGGCTGGAACCATCAAGGATGCCGGTGACGACCCGGACGTG
ACTCACGGCGCATTGCTCTATTCCCGCGTGCAGCTGATGGCCGAGCCGGGAATTCGCTTCATCGCCGGCAAAGGCGTCGG
CACCGTGACCCGTCCGGGTTTGGTGCTGCCCGTCGGCGAACCGGCGATCAACCCGGTGCCGCGCAAGATGATCAGCGATC
ACCTGACGCTGCTCGCCGAAGAAACCGGCTATCGCGGCGGCTTCGAGGTGACGGTCAACGTCGAGGGCGGCGAAGCCCTG
GCGCTGAAGACCATGAACCCACGCCTGGGCATCCTCGGCGGGCTGTCGATCCTCGGTACCAGCGGCATCGTCCGGCCGTT
TTCCTGCGCGGCGTACATCGCTTCGATCCACCAAGGCATCGACGTGGCGAAAACCAACGGCTTCCTGCACATCGCCGCCT
GCACCGGCAACGCCAGCGAAGACACCATGCGCCGGGTCTACAACCTGCCGGAAATTGCCCTGATCGAAATGGGCGACTTC
GTCGGCGCGGTGCTCAAGCACCTGCGCAAAGTACCTGTGGATAAACTCAGCCTGTGCGGCGGCTTCGGCAAAATCAGCAA
ACTGGCGGCCGGGCACATGGACCTGCATTCGCGTCATTCGAGCATCGACCTGCCGCAACTGGCCGAATGGGCGGCGGCGA
TTGGCGCCGACGACACCTTGCAACAAGCCATTCGTGGGGCGAACACCAGTCAGCAGGCGTTGGCGATCGCCAGTGCGGCT
GGCGTTGCCCTCGGTGATGAGGTCTGTCGCCATGCTCTGGAGTTCGCACGCAGCGTGGTACCGGCGCAGGTCCAGGTCGA
AGTGTTTGCGATAGATCGTCAGGGCGGCATCGTCGGCCATGCGGGAGCCTTTGTATGA

Upstream 100 bases:

>100_bases
CTGACCCGCATCCACATCGCCCAGGCACAGCCGCTGGGCGAATTCGACACCTGGCGCCAGGCGTTGCCGATCACCCTGCT
CGATCTGGTCAAACCCCTCG

Downstream 100 bases:

>100_bases
AGCGAATCTTGTTGCTGGGCGGTGTGACTGAAGCGCTGGCCATCGCGCGCACGTTGGGGCCGGAACACATTTACAGCCTG
GCCGGCGTCGGCCGGGTGCC

Product: cobalt-precorrin-6A synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MRDETAEQPAPLRSGLTTGSCATATSLAAARLLLGGVVADAVQIVLPKGKQVQMRLEFCRLTKDGAEAGTIKDAGDDPDV
THGALLYSRVQLMAEPGIRFIAGKGVGTVTRPGLVLPVGEPAINPVPRKMISDHLTLLAEETGYRGGFEVTVNVEGGEAL
ALKTMNPRLGILGGLSILGTSGIVRPFSCAAYIASIHQGIDVAKTNGFLHIAACTGNASEDTMRRVYNLPEIALIEMGDF
VGAVLKHLRKVPVDKLSLCGGFGKISKLAAGHMDLHSRHSSIDLPQLAEWAAAIGADDTLQQAIRGANTSQQALAIASAA
GVALGDEVCRHALEFARSVVPAQVQVEVFAIDRQGGIVGHAGAFV

Sequences:

>Translated_365_residues
MRDETAEQPAPLRSGLTTGSCATATSLAAARLLLGGVVADAVQIVLPKGKQVQMRLEFCRLTKDGAEAGTIKDAGDDPDV
THGALLYSRVQLMAEPGIRFIAGKGVGTVTRPGLVLPVGEPAINPVPRKMISDHLTLLAEETGYRGGFEVTVNVEGGEAL
ALKTMNPRLGILGGLSILGTSGIVRPFSCAAYIASIHQGIDVAKTNGFLHIAACTGNASEDTMRRVYNLPEIALIEMGDF
VGAVLKHLRKVPVDKLSLCGGFGKISKLAAGHMDLHSRHSSIDLPQLAEWAAAIGADDTLQQAIRGANTSQQALAIASAA
GVALGDEVCRHALEFARSVVPAQVQVEVFAIDRQGGIVGHAGAFV
>Mature_365_residues
MRDETAEQPAPLRSGLTTGSCATATSLAAARLLLGGVVADAVQIVLPKGKQVQMRLEFCRLTKDGAEAGTIKDAGDDPDV
THGALLYSRVQLMAEPGIRFIAGKGVGTVTRPGLVLPVGEPAINPVPRKMISDHLTLLAEETGYRGGFEVTVNVEGGEAL
ALKTMNPRLGILGGLSILGTSGIVRPFSCAAYIASIHQGIDVAKTNGFLHIAACTGNASEDTMRRVYNLPEIALIEMGDF
VGAVLKHLRKVPVDKLSLCGGFGKISKLAAGHMDLHSRHSSIDLPQLAEWAAAIGADDTLQQAIRGANTSQQALAIASAA
GVALGDEVCRHALEFARSVVPAQVQVEVFAIDRQGGIVGHAGAFV

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CBID_PSEPF (Q3KIR0)

Other databases:

- EMBL:   CP000094
- RefSeq:   YP_346335.1
- ProteinModelPortal:   Q3KIR0
- SMR:   Q3KIR0
- STRING:   Q3KIR0
- GeneID:   3712112
- GenomeReviews:   CP000094_GR
- KEGG:   pfo:Pfl01_0602
- eggNOG:   COG1903
- HOGENOM:   HBG705387
- OMA:   RRGWTTG
- ProtClustDB:   PRK00075
- BioCyc:   PFLU205922:PFL_0602-MONOMER
- HAMAP:   MF_00787
- InterPro:   IPR002748
- PIRSF:   PIRSF026782
- TIGRFAMs:   TIGR00312

Pfam domain/function: PF01888 CbiD; SSF111342 Cbl_biosynth_CbiD

EC number: NA

Molecular weight: Translated: 38032; Mature: 38032

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDETAEQPAPLRSGLTTGSCATATSLAAARLLLGGVVADAVQIVLPKGKQVQMRLEFCR
CCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHH
LTKDGAEAGTIKDAGDDPDVTHGALLYSRVQLMAEPGIRFIAGKGVGTVTRPGLVLPVGE
HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECCC
PAINPVPRKMISDHLTLLAEETGYRGGFEVTVNVEGGEALALKTMNPRLGILGGLSILGT
CCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCCCCCHHCCHHHHCC
SGIVRPFSCAAYIASIHQGIDVAKTNGFLHIAACTGNASEDTMRRVYNLPEIALIEMGDF
CCCCCHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCCCHHHHHHHHCCCCEEEEEHHHH
VGAVLKHLRKVPVDKLSLCGGFGKISKLAAGHMDLHSRHSSIDLPQLAEWAAAIGADDTL
HHHHHHHHHHCCHHHHHHHCCHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHCCCCHHH
QQAIRGANTSQQALAIASAAGVALGDEVCRHALEFARSVVPAQVQVEVFAIDRQGGIVGH
HHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCEEEC
AGAFV
CCCCC
>Mature Secondary Structure
MRDETAEQPAPLRSGLTTGSCATATSLAAARLLLGGVVADAVQIVLPKGKQVQMRLEFCR
CCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHH
LTKDGAEAGTIKDAGDDPDVTHGALLYSRVQLMAEPGIRFIAGKGVGTVTRPGLVLPVGE
HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECCC
PAINPVPRKMISDHLTLLAEETGYRGGFEVTVNVEGGEALALKTMNPRLGILGGLSILGT
CCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCCCCCHHCCHHHHCC
SGIVRPFSCAAYIASIHQGIDVAKTNGFLHIAACTGNASEDTMRRVYNLPEIALIEMGDF
CCCCCHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCCCHHHHHHHHCCCCEEEEEHHHH
VGAVLKHLRKVPVDKLSLCGGFGKISKLAAGHMDLHSRHSSIDLPQLAEWAAAIGADDTL
HHHHHHHHHHCCHHHHHHHCCHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHCCCCHHH
QQAIRGANTSQQALAIASAAGVALGDEVCRHALEFARSVVPAQVQVEVFAIDRQGGIVGH
HHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCEEEC
AGAFV
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA