Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
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Accession | NC_007492 |
Length | 6,438,405 |
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The map label for this gene is yxlA [H]
Identifier: 77456589
GI number: 77456589
Start: 411966
End: 413438
Strand: Direct
Name: yxlA [H]
Synonym: Pfl01_0361
Alternate gene names: 77456589
Gene position: 411966-413438 (Clockwise)
Preceding gene: 77456588
Following gene: 77456590
Centisome position: 6.4
GC content: 61.78
Gene sequence:
>1473_bases ATGGCGGGCAACACCGATCGTGCAGGCAGTAAACCGTTGATCGAAAGGCGTTCGATCGACTACATCCCGGAAGCGGAAAG ACACGGTCGTCTGTTCAGTCAGTTCACCCTGTGGATGGGTGCCAACCTGCAAATCACCGCGATTGTCACCGGGGCCCTGG CCGTGGTGCTGGGCGGCGATGTGTTCTGGTCGTTGATCGGTCTGCTGATCGGTCAACTGCTGGGCGGCGGGGTGATGGCG TTGCATGCGGCGCAAGGGCCGAAGCTTGGCCTGCCGCAGATGATTTCCAGCCGGGTGCAGTTCGGCGTCTACGGGGCGGC GATTCCGATCGTGCTGGTGTGCCTGATGTATCTGGGCTTCACCGCCACCGGAACGGTGCTGTCCGGTCAGGCGCTGGGCC AGTTGTTCGGGGTCAGCGACACCGTCGGCATCCTGCTTTTCGCCAGCGTCATCGTGGTGGTCACGGTGCTCGGCTATCGG GTGATCCACTGGATCGGCCGCATCGCCAGTGTCATTGGTGTGATCGCTTTCGTGTACCTGTTCAGCCGTCTGATGAGTCA GGTGGACGTCGGTGCACTTCTGCAAATCCGCCATTTCAGCTGGAGCAGTTTCCTGCTGGCGGTGTCGCTTGCGGCCTCTT GGCAGATCGCTTTCGGCCCGTACGTGGCGGACTACTCGCGTTACCTGCCGAGCAAGGTGTCTTCGGTGAAAACCTTCTTC GCCGCCGGTGCCGGTTCGGTGATCGGTGCGCAGGTGGCGATGATCCTCGGTGTGTTCGCGGCCGCTTCGGCCAACGGGCA ATTCGCCGGTCATGAAGTCGCTTACATCGTCGGTCTGGGCGGAACCGGTGCCACCGCCGCGCTGCTGTATTTCAGCATCG CGTTCGGCAAGGTCACCATCTCCACCCTGAACTCCTACGGCAGCTTCATGTGCATCGCGACCATCATCAGCGGCTTCCGT GGCCACCTGACGGTCACCCGCATGCAGCGTCTGGTGTTCGTGCTGGGGATCGTCGGCGCGGCGACCCTGATCGCGCTACT CGGCCAGCACTCGTTCCTCGGTGCGTTCAAGTCCTTCATCCTGTTCCTGCTGGCGTTCTTCACGCCGTGGAGCGCGATCA ACCTGGTGGACTACTACTGCATCACTCGCGAGCGCTATGACGTACCAGCGCTGGCGGATCCGAACGGTCGCTACGGCCGC TGGAACCTCCTCGGTATCAGCGTTTATGTGTTCGGGGTGCTGGTGCAACTGCCGTTCATCTCCACCAAGTTCTATACCGG TCCATTGGTAGCGGCCCTGGGGGATGTGGATATTTCCTGGATCATCGGTCTCGTGCTGCCCGCAGCGCTGTACTACGTCT GCGCGAAAAAATGGCACGGCACCGTACCCGATCGACTGATTCTGCCCGTCGAGCAGGACAGCGTTGTACAACCTAAAACA AGCGGGGCCGGTCGCGCTGCGGCGCAGGCCTGA
Upstream 100 bases:
>100_bases ACCTGCCGATGATCACCGGCAAGTGAACATCTGCGGGAGCGGGCACCCTCGCTCCCGCAGGGCCACAACAATAACCAGAA CAATCCACAGAGGTTGAATC
Downstream 100 bases:
>100_bases TTTGGACGTGGACAGGGCTGGATGCCTCTTGACTGCCGTAAGCCAATTCATGATTAGGAGCGTCACAACAATGAAATCGA ACAAGACCCTGCTGACCACC
Product: cytosine/purines, uracil, thiamine, allantoin permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 490; Mature: 489
Protein sequence:
>490_residues MAGNTDRAGSKPLIERRSIDYIPEAERHGRLFSQFTLWMGANLQITAIVTGALAVVLGGDVFWSLIGLLIGQLLGGGVMA LHAAQGPKLGLPQMISSRVQFGVYGAAIPIVLVCLMYLGFTATGTVLSGQALGQLFGVSDTVGILLFASVIVVVTVLGYR VIHWIGRIASVIGVIAFVYLFSRLMSQVDVGALLQIRHFSWSSFLLAVSLAASWQIAFGPYVADYSRYLPSKVSSVKTFF AAGAGSVIGAQVAMILGVFAAASANGQFAGHEVAYIVGLGGTGATAALLYFSIAFGKVTISTLNSYGSFMCIATIISGFR GHLTVTRMQRLVFVLGIVGAATLIALLGQHSFLGAFKSFILFLLAFFTPWSAINLVDYYCITRERYDVPALADPNGRYGR WNLLGISVYVFGVLVQLPFISTKFYTGPLVAALGDVDISWIIGLVLPAALYYVCAKKWHGTVPDRLILPVEQDSVVQPKT SGAGRAAAQA
Sequences:
>Translated_490_residues MAGNTDRAGSKPLIERRSIDYIPEAERHGRLFSQFTLWMGANLQITAIVTGALAVVLGGDVFWSLIGLLIGQLLGGGVMA LHAAQGPKLGLPQMISSRVQFGVYGAAIPIVLVCLMYLGFTATGTVLSGQALGQLFGVSDTVGILLFASVIVVVTVLGYR VIHWIGRIASVIGVIAFVYLFSRLMSQVDVGALLQIRHFSWSSFLLAVSLAASWQIAFGPYVADYSRYLPSKVSSVKTFF AAGAGSVIGAQVAMILGVFAAASANGQFAGHEVAYIVGLGGTGATAALLYFSIAFGKVTISTLNSYGSFMCIATIISGFR GHLTVTRMQRLVFVLGIVGAATLIALLGQHSFLGAFKSFILFLLAFFTPWSAINLVDYYCITRERYDVPALADPNGRYGR WNLLGISVYVFGVLVQLPFISTKFYTGPLVAALGDVDISWIIGLVLPAALYYVCAKKWHGTVPDRLILPVEQDSVVQPKT SGAGRAAAQA >Mature_489_residues AGNTDRAGSKPLIERRSIDYIPEAERHGRLFSQFTLWMGANLQITAIVTGALAVVLGGDVFWSLIGLLIGQLLGGGVMAL HAAQGPKLGLPQMISSRVQFGVYGAAIPIVLVCLMYLGFTATGTVLSGQALGQLFGVSDTVGILLFASVIVVVTVLGYRV IHWIGRIASVIGVIAFVYLFSRLMSQVDVGALLQIRHFSWSSFLLAVSLAASWQIAFGPYVADYSRYLPSKVSSVKTFFA AGAGSVIGAQVAMILGVFAAASANGQFAGHEVAYIVGLGGTGATAALLYFSIAFGKVTISTLNSYGSFMCIATIISGFRG HLTVTRMQRLVFVLGIVGAATLIALLGQHSFLGAFKSFILFLLAFFTPWSAINLVDYYCITRERYDVPALADPNGRYGRW NLLGISVYVFGVLVQLPFISTKFYTGPLVAALGDVDISWIIGLVLPAALYYVCAKKWHGTVPDRLILPVEQDSVVQPKTS GAGRAAAQA
Specific function: Transport Of Allantoin (By Similarity). [C]
COG id: COG1457
COG function: function code F; Purine-cytosine permease and related proteins
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the purine-cytosine permease family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6320902, Length=310, Percent_Identity=26.1290322580645, Blast_Score=67, Evalue=8e-12, Organism=Saccharomyces cerevisiae, GI6320903, Length=425, Percent_Identity=23.7647058823529, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6320897, Length=410, Percent_Identity=23.4146341463415, Blast_Score=64, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001248 [H]
Pfam domain/function: PF02133 Transp_cyt_pur [H]
EC number: NA
Molecular weight: Translated: 52147; Mature: 52016
Theoretical pI: Translated: 9.71; Mature: 9.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGNTDRAGSKPLIERRSIDYIPEAERHGRLFSQFTLWMGANLQITAIVTGALAVVLGGD CCCCCCCCCCCCCHHCCCCCCCCCCHHHCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHH VFWSLIGLLIGQLLGGGVMALHAAQGPKLGLPQMISSRVQFGVYGAAIPIVLVCLMYLGF HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TATGTVLSGQALGQLFGVSDTVGILLFASVIVVVTVLGYRVIHWIGRIASVIGVIAFVYL CCCCCEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FSRLMSQVDVGALLQIRHFSWSSFLLAVSLAASWQIAFGPYVADYSRYLPSKVSSVKTFF HHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHHHH AAGAGSVIGAQVAMILGVFAAASANGQFAGHEVAYIVGLGGTGATAALLYFSIAFGKVTI HCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHH STLNSYGSFMCIATIISGFRGHLTVTRMQRLVFVLGIVGAATLIALLGQHSFLGAFKSFI HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH LFLLAFFTPWSAINLVDYYCITRERYDVPALADPNGRYGRWNLLGISVYVFGVLVQLPFI HHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCHH STKFYTGPLVAALGDVDISWIIGLVLPAALYYVCAKKWHGTVPDRLILPVEQDSVVQPKT CCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCC SGAGRAAAQA CCCCCCCCCC >Mature Secondary Structure AGNTDRAGSKPLIERRSIDYIPEAERHGRLFSQFTLWMGANLQITAIVTGALAVVLGGD CCCCCCCCCCCCHHCCCCCCCCCCHHHCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHH VFWSLIGLLIGQLLGGGVMALHAAQGPKLGLPQMISSRVQFGVYGAAIPIVLVCLMYLGF HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TATGTVLSGQALGQLFGVSDTVGILLFASVIVVVTVLGYRVIHWIGRIASVIGVIAFVYL CCCCCEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FSRLMSQVDVGALLQIRHFSWSSFLLAVSLAASWQIAFGPYVADYSRYLPSKVSSVKTFF HHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHHHH AAGAGSVIGAQVAMILGVFAAASANGQFAGHEVAYIVGLGGTGATAALLYFSIAFGKVTI HCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHH STLNSYGSFMCIATIISGFRGHLTVTRMQRLVFVLGIVGAATLIALLGQHSFLGAFKSFI HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH LFLLAFFTPWSAINLVDYYCITRERYDVPALADPNGRYGRWNLLGISVYVFGVLVQLPFI HHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCHH STKFYTGPLVAALGDVDISWIIGLVLPAALYYVCAKKWHGTVPDRLILPVEQDSVVQPKT CCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCC SGAGRAAAQA CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969509; 9384377 [H]