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The map label for this gene is yvoA [H]

Identifier: 77454788

GI number: 77454788

Start: 206258

End: 207046

Strand: Direct

Name: yvoA [H]

Synonym: pREL1_0221

Alternate gene names: 77454788

Gene position: 206258-207046 (Clockwise)

Preceding gene: 77454787

Following gene: 77454789

Centisome position: 75.95

GC content: 64.77

Gene sequence:

>789_bases
ATGGTCGACGACGATCGCAGTGCCGCGCTCGACCGCTCCAGTGCGATGCCGCTGTGGGCGCAACTGCATGCCGATCTGGT
CCGCAGGATCGGCGACGACGAATTCGCCGGCTCCGAGTTCCCGGGCGAGCATGCGTTGACCACGAGTTACGGCGTGAGTC
GTCACACCACCCGCGAGGCTCTGCGGCGCTTACGGAACGAAGGAATCTTGATTGCGGAGCGTGGCCGGCCTTCTCGGCTG
GCGGCTCCGCCGGTGATCGAGCAACCTCTCGGTGCGCTCTACAGTCTCTTCGCTGCCGTGGAAGCCACGGGTGTTGCCCA
GCACAGCGTGGTGCGTGCACTCGAACTACGCACCGACCCCGCGGTCGCTGCCACTCTGCAGGTCGGCCCCAAGGCCCCAC
TGCTCTACCTGGAGCGCATCCGTATGGCAGGGACGATGCCGTTGGCGCTTGACTATGCCTGGTTGCCAGGAGATCTGGCA
CACGACCTCCTGGACGCAGACTTCACTCATACAGCTCTGTACATCGAGCTCGAGCAACGCTGCGGCATCCGCCTCACCGG
TGGCCGCGAGGACGTCACTGCCGTCGTCCCGGATCCAGAGGATGCGGCAGCACTCGAACTCGATGCGAAGACCGCCGCGC
TGTCGATCCGCCGTTTGGGTTTCATGAACTCCCGGCCGGTGGAGTTACGGCACACAGTGATTCGAGGAGATCGGTTCACC
GTGTCGGCCACGTTCTCATCGAGCGAGGGCTATCGCTTCGTGCCGGCCATGCCGCTGCACGCCCTGTAA

Upstream 100 bases:

>100_bases
TAACCCACGAGCGTCAGCATGTGGCGACTCAACCCACGAGTGTCAGCATGTGGCGACTCGAATTCGGATTCCGACACACA
GATCGACAGGAGAGCCTCTG

Downstream 100 bases:

>100_bases
GCACCCACCGATCCAAGGAGCGTTCTTCATGACTGGAGCACTACCGGCAGCCGATCCAGCTGCCGCACACGCACTGATCG
CCGAATCCGGAGCCATCCTG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MVDDDRSAALDRSSAMPLWAQLHADLVRRIGDDEFAGSEFPGEHALTTSYGVSRHTTREALRRLRNEGILIAERGRPSRL
AAPPVIEQPLGALYSLFAAVEATGVAQHSVVRALELRTDPAVAATLQVGPKAPLLYLERIRMAGTMPLALDYAWLPGDLA
HDLLDADFTHTALYIELEQRCGIRLTGGREDVTAVVPDPEDAAALELDAKTAALSIRRLGFMNSRPVELRHTVIRGDRFT
VSATFSSSEGYRFVPAMPLHAL

Sequences:

>Translated_262_residues
MVDDDRSAALDRSSAMPLWAQLHADLVRRIGDDEFAGSEFPGEHALTTSYGVSRHTTREALRRLRNEGILIAERGRPSRL
AAPPVIEQPLGALYSLFAAVEATGVAQHSVVRALELRTDPAVAATLQVGPKAPLLYLERIRMAGTMPLALDYAWLPGDLA
HDLLDADFTHTALYIELEQRCGIRLTGGREDVTAVVPDPEDAAALELDAKTAALSIRRLGFMNSRPVELRHTVIRGDRFT
VSATFSSSEGYRFVPAMPLHAL
>Mature_262_residues
MVDDDRSAALDRSSAMPLWAQLHADLVRRIGDDEFAGSEFPGEHALTTSYGVSRHTTREALRRLRNEGILIAERGRPSRL
AAPPVIEQPLGALYSLFAAVEATGVAQHSVVRALELRTDPAVAATLQVGPKAPLLYLERIRMAGTMPLALDYAWLPGDLA
HDLLDADFTHTALYIELEQRCGIRLTGGREDVTAVVPDPEDAAALELDAKTAALSIRRLGFMNSRPVELRHTVIRGDRFT
VSATFSSSEGYRFVPAMPLHAL

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=215, Percent_Identity=27.906976744186, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790118, Length=226, Percent_Identity=25.2212389380531, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28616; Mature: 28616

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDDDRSAALDRSSAMPLWAQLHADLVRRIGDDEFAGSEFPGEHALTTSYGVSRHTTREA
CCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCHHHHHHH
LRRLRNEGILIAERGRPSRLAAPPVIEQPLGALYSLFAAVEATGVAQHSVVRALELRTDP
HHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC
AVAATLQVGPKAPLLYLERIRMAGTMPLALDYAWLPGDLAHDLLDADFTHTALYIELEQR
CEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHCCCCCEEEEEEEEHHH
CGIRLTGGREDVTAVVPDPEDAAALELDAKTAALSIRRLGFMNSRPVELRHTVIRGDRFT
CCEEEECCCCCEEEECCCCCCCEEEEECCHHHHHHHHHHCCCCCCCHHEEEEEEECCEEE
VSATFSSSEGYRFVPAMPLHAL
EEEEECCCCCEEEECCCCCCCC
>Mature Secondary Structure
MVDDDRSAALDRSSAMPLWAQLHADLVRRIGDDEFAGSEFPGEHALTTSYGVSRHTTREA
CCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCHHHHHHH
LRRLRNEGILIAERGRPSRLAAPPVIEQPLGALYSLFAAVEATGVAQHSVVRALELRTDP
HHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC
AVAATLQVGPKAPLLYLERIRMAGTMPLALDYAWLPGDLAHDLLDADFTHTALYIELEQR
CEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHCCCCCEEEEEEEEHHH
CGIRLTGGREDVTAVVPDPEDAAALELDAKTAALSIRRLGFMNSRPVELRHTVIRGDRFT
CCEEEECCCCCEEEECCCCCCCEEEEECCHHHHHHHHHHCCCCCCCHHEEEEEEECCEEE
VSATFSSSEGYRFVPAMPLHAL
EEEEECCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]