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The map label for this gene is ecfR [H]

Identifier: 76819714

GI number: 76819714

Start: 36193

End: 36714

Strand: Direct

Name: ecfR [H]

Synonym: BURPS1710b_A0014

Alternate gene names: 76819714

Gene position: 36193-36714 (Clockwise)

Preceding gene: 76817695

Following gene: 76818254

Centisome position: 1.14

GC content: 70.11

Gene sequence:

>522_bases
GTGAGCTTCGAATCGGACGTCGTCGGCTGGCTGCCGCAGTTGCGCCGCTATGCGCGCGCGCTGACGGGCGACCCCGCGTG
GGCCGACGATCTCGTACAGGACACCGTCGAGCGCGCGTTCTCGCGCATGCGCGCGTTCCGTCCCGACAGCAATCTGCGCG
CGTGGCTGTTGACGATCCTGCGCCATCTGTACATCGATCAGTTGCGCGCGCGCCGCGAATTCGCCGTCGACGACGACGAA
GGCCCGTGGCGCACGCTCGAGGCGCCCGCCGGCCAGATCGACGCGCTCGTGCTGCGCGACGTGCAGCGAATGCTGTACCG
GCTGCCGCTCGAGCAGCGCGAAGTGCTGCTGCTCGTCTGCGTCGAAGAGTTGAGCTATCAGGACGCGTCGGCGGTGCTCG
GCGTGCCGGTCGGCACCGTGATGTCGCGGCTGTCGCGCGCGCGGGAGCGCATGCGCGCGCTGCTGACCGACGCGCCGCTG
CGGCCGCCGCTGTCCCTTACCGCTGCGAGACATCATCGATGA

Upstream 100 bases:

>100_bases
GGGCGACATGTCGCCGTCCGACCATGCGGCGCCGATGGGCGGCTACGGCCGCGGCGGCGGCAGCGGCGGTGGCGGCGGCT
ATTGAACGACGGCGCCGCGC

Downstream 100 bases:

>100_bases
GCGACGATCCCGATCTTTGCGTTGCACCGGAATCCGACGAGCCGGGGCTCCTCGCGCTGTCGGCGTTCGTCGACGGCGAA
CTGCCGGACGCGCAGAGCCG

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MSFESDVVGWLPQLRRYARALTGDPAWADDLVQDTVERAFSRMRAFRPDSNLRAWLLTILRHLYIDQLRARREFAVDDDE
GPWRTLEAPAGQIDALVLRDVQRMLYRLPLEQREVLLLVCVEELSYQDASAVLGVPVGTVMSRLSRARERMRALLTDAPL
RPPLSLTAARHHR

Sequences:

>Translated_173_residues
MSFESDVVGWLPQLRRYARALTGDPAWADDLVQDTVERAFSRMRAFRPDSNLRAWLLTILRHLYIDQLRARREFAVDDDE
GPWRTLEAPAGQIDALVLRDVQRMLYRLPLEQREVLLLVCVEELSYQDASAVLGVPVGTVMSRLSRARERMRALLTDAPL
RPPLSLTAARHHR
>Mature_172_residues
SFESDVVGWLPQLRRYARALTGDPAWADDLVQDTVERAFSRMRAFRPDSNLRAWLLTILRHLYIDQLRARREFAVDDDEG
PWRTLEAPAGQIDALVLRDVQRMLYRLPLEQREVLLLVCVEELSYQDASAVLGVPVGTVMSRLSRARERMRALLTDAPLR
PPLSLTAARHHR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19931; Mature: 19800

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFESDVVGWLPQLRRYARALTGDPAWADDLVQDTVERAFSRMRAFRPDSNLRAWLLTIL
CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RHLYIDQLRARREFAVDDDEGPWRTLEAPAGQIDALVLRDVQRMLYRLPLEQREVLLLVC
HHHHHHHHHHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
VEELSYQDASAVLGVPVGTVMSRLSRARERMRALLTDAPLRPPLSLTAARHHR
HHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCC
>Mature Secondary Structure 
SFESDVVGWLPQLRRYARALTGDPAWADDLVQDTVERAFSRMRAFRPDSNLRAWLLTIL
CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RHLYIDQLRARREFAVDDDEGPWRTLEAPAGQIDALVLRDVQRMLYRLPLEQREVLLLVC
HHHHHHHHHHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
VEELSYQDASAVLGVPVGTVMSRLSRARERMRALLTDAPLRPPLSLTAARHHR
HHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]