| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is gpmA [H]
Identifier: 75674401
GI number: 75674401
Start: 232780
End: 233403
Strand: Direct
Name: gpmA [H]
Synonym: Nwi_0202
Alternate gene names: 75674401
Gene position: 232780-233403 (Clockwise)
Preceding gene: 75674400
Following gene: 75674404
Centisome position: 6.84
GC content: 62.5
Gene sequence:
>624_bases ATGAGCGAACGTCTTCTGGTGCTCGTGCGTCACGGCCAGAGCGAATGGAATCTGAAAAACCTGTTCACAGGCTGGAAGGA TCCGGATCTGACGGAGTTGGGCGCGGCTGAGGCGAAGGATGCGGGGCGCAAGCTGAAGGCGCAGGGCTTTGTTTTCGACA TCGCCTTCACCTCGACGTTGATCCGTGCCCAGCACACGCTCGATCTTGTGCTCAAGGAACTGGACCAGACCGGGATTCCG GTCAGGAAAGACCAGGCGCTGAACGAGCGTGACTATGGCGATCTTTCGGGCCTCAACAAGGATGAGGCCCGCAAGAAGTG GGGCGACGAACAGGTGCTGGTGTGGCGCCGGTCGTATGACGTACCGCCGCCCGGCGGCGAGAGCCTGAAGGATACGCTGG CGCGCACGCTGCCGTACTTCGTGCAGGAAATCCTGCCATGCGTTCTTCGCGGCGAGTGCACGCTCGTGGCGGCGCACGGC AACTCGCTGCGCGCGCTCGTCATGGTTCTGGAAAAACTGTCGCCGGAACAGATTCTCGCGCGCGAACTGGCGACCGGCGC GCCCGTGATCTATCGGCTCAACGCCGATGCGACGGTGGCATCGAAACTGGATCTCGCGGCCTGA
Upstream 100 bases:
>100_bases TTTCGTGCGAAGACGCCGCGTCAAATCAAGATCCGAGAGCCACGCTTTTGATCCGTCGGAAGCGGAAAGGCTCCAGGGAT CCAAGAATGGAGCAGGCAGA
Downstream 100 bases:
>100_bases CGAACCTCATTCCAGGCCAATCCGCCCGGCCTCCCACCCCAGCATCGCGTGCTTGCGGGTGATTCCCCAGTGATACCCCG TCAGCGCGCCGCTTTTGCCG
Product: phosphoglyceromutase
Products: NA
Alternate protein names: BPG-dependent PGAM; PGAM; Phosphoglyceromutase; dPGM [H]
Number of amino acids: Translated: 207; Mature: 206
Protein sequence:
>207_residues MSERLLVLVRHGQSEWNLKNLFTGWKDPDLTELGAAEAKDAGRKLKAQGFVFDIAFTSTLIRAQHTLDLVLKELDQTGIP VRKDQALNERDYGDLSGLNKDEARKKWGDEQVLVWRRSYDVPPPGGESLKDTLARTLPYFVQEILPCVLRGECTLVAAHG NSLRALVMVLEKLSPEQILARELATGAPVIYRLNADATVASKLDLAA
Sequences:
>Translated_207_residues MSERLLVLVRHGQSEWNLKNLFTGWKDPDLTELGAAEAKDAGRKLKAQGFVFDIAFTSTLIRAQHTLDLVLKELDQTGIP VRKDQALNERDYGDLSGLNKDEARKKWGDEQVLVWRRSYDVPPPGGESLKDTLARTLPYFVQEILPCVLRGECTLVAAHG NSLRALVMVLEKLSPEQILARELATGAPVIYRLNADATVASKLDLAA >Mature_206_residues SERLLVLVRHGQSEWNLKNLFTGWKDPDLTELGAAEAKDAGRKLKAQGFVFDIAFTSTLIRAQHTLDLVLKELDQTGIPV RKDQALNERDYGDLSGLNKDEARKKWGDEQVLVWRRSYDVPPPGGESLKDTLARTLPYFVQEILPCVLRGECTLVAAHGN SLRALVMVLEKLSPEQILARELATGAPVIYRLNADATVASKLDLAA
Specific function: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate [H]
COG id: COG0588
COG function: function code G; Phosphoglycerate mutase 1
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily [H]
Homologues:
Organism=Homo sapiens, GI4505753, Length=223, Percent_Identity=46.1883408071749, Blast_Score=185, Evalue=3e-47, Organism=Homo sapiens, GI50593010, Length=223, Percent_Identity=43.4977578475336, Blast_Score=182, Evalue=2e-46, Organism=Homo sapiens, GI4502445, Length=225, Percent_Identity=41.7777777777778, Blast_Score=171, Evalue=3e-43, Organism=Homo sapiens, GI40353764, Length=225, Percent_Identity=41.7777777777778, Blast_Score=171, Evalue=3e-43, Organism=Homo sapiens, GI71274132, Length=223, Percent_Identity=43.0493273542601, Blast_Score=170, Evalue=8e-43, Organism=Homo sapiens, GI310129614, Length=165, Percent_Identity=46.6666666666667, Blast_Score=132, Evalue=2e-31, Organism=Escherichia coli, GI1786970, Length=221, Percent_Identity=47.5113122171946, Blast_Score=194, Evalue=4e-51, Organism=Saccharomyces cerevisiae, GI6322697, Length=216, Percent_Identity=42.1296296296296, Blast_Score=157, Evalue=2e-39, Organism=Saccharomyces cerevisiae, GI6324516, Length=264, Percent_Identity=26.8939393939394, Blast_Score=97, Evalue=2e-21, Organism=Saccharomyces cerevisiae, GI6320183, Length=268, Percent_Identity=25.3731343283582, Blast_Score=87, Evalue=1e-18, Organism=Saccharomyces cerevisiae, GI6324857, Length=179, Percent_Identity=30.1675977653631, Blast_Score=75, Evalue=9e-15, Organism=Drosophila melanogaster, GI24646216, Length=217, Percent_Identity=45.6221198156682, Blast_Score=180, Evalue=5e-46, Organism=Drosophila melanogaster, GI85725270, Length=219, Percent_Identity=44.7488584474886, Blast_Score=174, Evalue=3e-44, Organism=Drosophila melanogaster, GI85725272, Length=219, Percent_Identity=44.7488584474886, Blast_Score=174, Evalue=3e-44, Organism=Drosophila melanogaster, GI24650981, Length=219, Percent_Identity=44.7488584474886, Blast_Score=174, Evalue=3e-44, Organism=Drosophila melanogaster, GI28571815, Length=217, Percent_Identity=32.7188940092166, Blast_Score=118, Evalue=3e-27, Organism=Drosophila melanogaster, GI28571817, Length=217, Percent_Identity=32.7188940092166, Blast_Score=118, Evalue=3e-27, Organism=Drosophila melanogaster, GI24648979, Length=217, Percent_Identity=32.7188940092166, Blast_Score=118, Evalue=3e-27,
Paralogues:
None
Copy number: 960 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013078 - InterPro: IPR001345 - InterPro: IPR005952 [H]
Pfam domain/function: PF00300 PGAM [H]
EC number: =5.4.2.1 [H]
Molecular weight: Translated: 22977; Mature: 22845
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: PS00175 PG_MUTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSERLLVLVRHGQSEWNLKNLFTGWKDPDLTELGAAEAKDAGRKLKAQGFVFDIAFTSTL CCCCEEEEEECCCCCCCHHHHHCCCCCCCHHHHCCHHHHHHCCEEECCCEEEEHHHHHHH IRAQHTLDLVLKELDQTGIPVRKDQALNERDYGDLSGLNKDEARKKWGDEQVLVWRRSYD HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCC VPPPGGESLKDTLARTLPYFVQEILPCVLRGECTLVAAHGNSLRALVMVLEKLSPEQILA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCHHHHHH RELATGAPVIYRLNADATVASKLDLAA HHHHCCCCEEEEECCCCHHHHHCCCCC >Mature Secondary Structure SERLLVLVRHGQSEWNLKNLFTGWKDPDLTELGAAEAKDAGRKLKAQGFVFDIAFTSTL CCCEEEEEECCCCCCCHHHHHCCCCCCCHHHHCCHHHHHHCCEEECCCEEEEHHHHHHH IRAQHTLDLVLKELDQTGIPVRKDQALNERDYGDLSGLNKDEARKKWGDEQVLVWRRSYD HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCC VPPPGGESLKDTLARTLPYFVQEILPCVLRGECTLVAAHGNSLRALVMVLEKLSPEQILA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCHHHHHH RELATGAPVIYRLNADATVASKLDLAA HHHHCCCCEEEEECCCCHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA