Click here to switch to the map view.

The map label for this gene is ydaL [C]

Identifier: 75674308

GI number: 75674308

Start: 128672

End: 129250

Strand: Direct

Name: ydaL [C]

Synonym: Nwi_0109

Alternate gene names: 75674308

Gene position: 128672-129250 (Clockwise)

Preceding gene: 75674307

Following gene: 75674309

Centisome position: 3.78

GC content: 65.11

Gene sequence:

>579_bases
ATGAAACGCTTCTCGCCCGACGCATCCGCGCGACCGCGCCGCCGGCGCGTCCTTACCGACGAGGAACGCCGGTTGTGGGA
AAGCGTCGCGGGGCAAGCCAAGCCGCTGCGCAAACCATCTCCGCCCGATTCCTTTCAACCTAGGCTCGAGGTGAAATCCG
CGAGCATCGCAGAGTTCGCGACCCGGTCTGAATCTGACCCGACCGGAAAAGCGGTCAGGTTCAATAACCCGCCGCGGGCG
GCGCTCACCCGCCGCGAGCGATCGCAACTGTCCCGAGGGCGGAAAGACATCGATGCACGGATCGACCTGCATGGGATGAC
GCAGACACGGGCATATCGAGCCTTGCTGCGGTTTTTGCAGGATGCATCGGGCGATGGCCTCATCTTCGTGCTTGTCATTA
CCGGCAAGGGCCGCGCGAAGGGAGCGGATTCCGAGCGAGGCGTCCTGCGGCGGCAGGTCCCGCAATGGCTGGCTCTCCCC
GAGTTTCGCTCGCTGGTCGTCGGTTTCGACGAGGCGCATCTCGGCCATGGCGGCGAGGGCGCACTTTACGTGCGCTTGCG
GCGCAGAGTCAGGGCATGA

Upstream 100 bases:

>100_bases
CGGAAGCCGCTCCCCTGCCATCGGCGCGGCCCGGGGTCAGATCAAGTCGGAAACCGCGATATCGCAAGCATCAGCGCCGC
CTCTGGCATCGCCGGGCGCG

Downstream 100 bases:

>100_bases
TCTCGAACGTGAAGCGGCTCTCGGCACCGGACCATGCTCGATCAGGCCCCCGGTTTGTAGGCGCCGCTTCTGATTGAATC
GGAAACGAAGTTCTGGATCG

Product: Smr protein/MutS2

Products: NA

Alternate protein names: Smr Domain-Containing Protein; DNA Repair Protein Smr/MutS Family; Smr Protein; Smr/MutS Family DNA Repair Protein; Smr Protein/MutS2 Domain Protein; Smr Family Protein; Smr Protein/MutS2 C-Terminal; DNA Repair Protein; Smr Protein/Muts2-Like

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MKRFSPDASARPRRRRVLTDEERRLWESVAGQAKPLRKPSPPDSFQPRLEVKSASIAEFATRSESDPTGKAVRFNNPPRA
ALTRRERSQLSRGRKDIDARIDLHGMTQTRAYRALLRFLQDASGDGLIFVLVITGKGRAKGADSERGVLRRQVPQWLALP
EFRSLVVGFDEAHLGHGGEGALYVRLRRRVRA

Sequences:

>Translated_192_residues
MKRFSPDASARPRRRRVLTDEERRLWESVAGQAKPLRKPSPPDSFQPRLEVKSASIAEFATRSESDPTGKAVRFNNPPRA
ALTRRERSQLSRGRKDIDARIDLHGMTQTRAYRALLRFLQDASGDGLIFVLVITGKGRAKGADSERGVLRRQVPQWLALP
EFRSLVVGFDEAHLGHGGEGALYVRLRRRVRA
>Mature_192_residues
MKRFSPDASARPRRRRVLTDEERRLWESVAGQAKPLRKPSPPDSFQPRLEVKSASIAEFATRSESDPTGKAVRFNNPPRA
ALTRRERSQLSRGRKDIDARIDLHGMTQTRAYRALLRFLQDASGDGLIFVLVITGKGRAKGADSERGVLRRQVPQWLALP
EFRSLVVGFDEAHLGHGGEGALYVRLRRRVRA

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21678; Mature: 21678

Theoretical pI: Translated: 11.99; Mature: 11.99

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRFSPDASARPRRRRVLTDEERRLWESVAGQAKPLRKPSPPDSFQPRLEVKSASIAEFA
CCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECHHHHHHHH
TRSESDPTGKAVRFNNPPRAALTRRERSQLSRGRKDIDARIDLHGMTQTRAYRALLRFLQ
HCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHH
DASGDGLIFVLVITGKGRAKGADSERGVLRRQVPQWLALPEFRSLVVGFDEAHLGHGGEG
CCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHCCCCCCC
ALYVRLRRRVRA
HHHHHHHHHHCC
>Mature Secondary Structure
MKRFSPDASARPRRRRVLTDEERRLWESVAGQAKPLRKPSPPDSFQPRLEVKSASIAEFA
CCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECHHHHHHHH
TRSESDPTGKAVRFNNPPRAALTRRERSQLSRGRKDIDARIDLHGMTQTRAYRALLRFLQ
HCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHH
DASGDGLIFVLVITGKGRAKGADSERGVLRRQVPQWLALPEFRSLVVGFDEAHLGHGGEG
CCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHCCCCCCC
ALYVRLRRRVRA
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA