| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is dut
Identifier: 75674243
GI number: 75674243
Start: 49555
End: 50013
Strand: Direct
Name: dut
Synonym: Nwi_0044
Alternate gene names: 75674243
Gene position: 49555-50013 (Clockwise)
Preceding gene: 75674242
Following gene: 75674244
Centisome position: 1.46
GC content: 70.15
Gene sequence:
>459_bases ATGAGCGATCCGATCAAGGTCGATGTCCGGCAACTGCCGCATGCCGAGGGCCTTCCGCTGCCGTCCTACCAAAGCACCCA GGCGGCCGGTCTTGACCTCATCGCCGCGATTGGCGAACAGGCGCCGCTGGTTCTCGCGGCAGGCCGGCGGGCCATGGTGC CGACCGGGCTCGTCATCGCGCTGCCCGATGGATACGAGGCGCAGGTGCGGCCGCGCTCCGGCCTCGCCGCACGGCATGGC GTGACCGTGCTGAATTCGCCCGGCACCGTGGATGCCGACTATCGCGGCGAGATCAACGTGCTTCTTGTGAACCTCGGCAG CGAGGCCTTCACGATCCGCCGCGGCGAGCGTATCGCGCAGATGATCGTCGCGCCGGTGACTCGCGTGGAACTGGTGCGCG CGGCGGCGCTGCCGGCGACGCCACGCGGCAGCGGCGGATTCGGCTCGACCGGGCGTTAG
Upstream 100 bases:
>100_bases ACGGAGAGATCAGGACCGAGTCCTTCCCCGTCATGACCAAGGAAGAGGTGGCCGCCATGCTGATCGAACGCATCATCTCA GCCCTGCCGGGTCCGGCGGC
Downstream 100 bases:
>100_bases AGCCTTTTCGTTTCCGATTGAATCGGAAGCGGAGCTTCAGACCGGCCGTGACGCGTTTTCGTCACACGAACAGATCACCC GCTCCGGTCGCGCAAAAACC
Product: deoxyuridine 5'-triphosphate nucleotidohydrolase
Products: NA
Alternate protein names: dUTPase; dUTP pyrophosphatase
Number of amino acids: Translated: 152; Mature: 151
Protein sequence:
>152_residues MSDPIKVDVRQLPHAEGLPLPSYQSTQAAGLDLIAAIGEQAPLVLAAGRRAMVPTGLVIALPDGYEAQVRPRSGLAARHG VTVLNSPGTVDADYRGEINVLLVNLGSEAFTIRRGERIAQMIVAPVTRVELVRAAALPATPRGSGGFGSTGR
Sequences:
>Translated_152_residues MSDPIKVDVRQLPHAEGLPLPSYQSTQAAGLDLIAAIGEQAPLVLAAGRRAMVPTGLVIALPDGYEAQVRPRSGLAARHG VTVLNSPGTVDADYRGEINVLLVNLGSEAFTIRRGERIAQMIVAPVTRVELVRAAALPATPRGSGGFGSTGR >Mature_151_residues SDPIKVDVRQLPHAEGLPLPSYQSTQAAGLDLIAAIGEQAPLVLAAGRRAMVPTGLVIALPDGYEAQVRPRSGLAARHGV TVLNSPGTVDADYRGEINVLLVNLGSEAFTIRRGERIAQMIVAPVTRVELVRAAALPATPRGSGGFGSTGR
Specific function: This enzyme is involved in nucleotide metabolism:it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA
COG id: COG0756
COG function: function code F; dUTPase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dUTPase family
Homologues:
Organism=Homo sapiens, GI70906444, Length=138, Percent_Identity=43.4782608695652, Blast_Score=108, Evalue=2e-24, Organism=Homo sapiens, GI4503423, Length=132, Percent_Identity=44.6969696969697, Blast_Score=107, Evalue=4e-24, Organism=Homo sapiens, GI70906441, Length=132, Percent_Identity=44.6969696969697, Blast_Score=105, Evalue=2e-23, Organism=Escherichia coli, GI1790071, Length=150, Percent_Identity=43.3333333333333, Blast_Score=116, Evalue=7e-28, Organism=Caenorhabditis elegans, GI71988561, Length=147, Percent_Identity=41.4965986394558, Blast_Score=114, Evalue=2e-26, Organism=Saccharomyces cerevisiae, GI6319729, Length=134, Percent_Identity=36.5671641791045, Blast_Score=85, Evalue=6e-18, Organism=Drosophila melanogaster, GI24583610, Length=150, Percent_Identity=38.6666666666667, Blast_Score=87, Evalue=4e-18, Organism=Drosophila melanogaster, GI19921126, Length=131, Percent_Identity=40.4580152671756, Blast_Score=87, Evalue=4e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): DUT_NITWN (Q3SWM9)
Other databases:
- EMBL: CP000115 - RefSeq: YP_316664.1 - ProteinModelPortal: Q3SWM9 - SMR: Q3SWM9 - STRING: Q3SWM9 - GeneID: 3676483 - GenomeReviews: CP000115_GR - KEGG: nwi:Nwi_0044 - NMPDR: fig|323098.3.peg.41 - eggNOG: COG0756 - HOGENOM: HBG436079 - OMA: LDLRACI - PhylomeDB: Q3SWM9 - ProtClustDB: PRK00601 - BioCyc: NWIN323098:NWI_0044-MONOMER - HAMAP: MF_00116 - InterPro: IPR008180 - InterPro: IPR008181 - TIGRFAMs: TIGR00576
Pfam domain/function: PF00692 dUTPase
EC number: =3.6.1.23
Molecular weight: Translated: 15826; Mature: 15695
Theoretical pI: Translated: 9.77; Mature: 9.77
Prosite motif: NA
Important sites: BINDING 85-85
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDPIKVDVRQLPHAEGLPLPSYQSTQAAGLDLIAAIGEQAPLVLAAGRRAMVPTGLVIA CCCCEEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCEECCCCEEEE LPDGYEAQVRPRSGLAARHGVTVLNSPGTVDADYRGEINVLLVNLGSEAFTIRRGERIAQ CCCCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECHHHHHH MIVAPVTRVELVRAAALPATPRGSGGFGSTGR HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure SDPIKVDVRQLPHAEGLPLPSYQSTQAAGLDLIAAIGEQAPLVLAAGRRAMVPTGLVIA CCCEEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCEECCCCEEEE LPDGYEAQVRPRSGLAARHGVTVLNSPGTVDADYRGEINVLLVNLGSEAFTIRRGERIAQ CCCCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECHHHHHH MIVAPVTRVELVRAAALPATPRGSGGFGSTGR HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA