Click here to switch to the map view.

The map label for this gene is rimP

Identifier: 75674220

GI number: 75674220

Start: 21460

End: 22242

Strand: Direct

Name: rimP

Synonym: Nwi_0021

Alternate gene names: 75674220

Gene position: 21460-22242 (Clockwise)

Preceding gene: 75674219

Following gene: 75674221

Centisome position: 0.63

GC content: 64.5

Gene sequence:

>783_bases
ATGACCGATCCATCTGCCCAGAACCCCGACCATGAGCTGCTCGACGAGCCGCGTCTGGTGGTCGAGCCCGGCGTCGCGGC
GCGGGTCGCGGCCATCGCCGCGCCGGTGCTGCAGGGCATGGGGTATCGGCTGGTCCGCATCAAGGTCTCAGGCGAAGCGG
GCTGCACGGTCCAGATCATGGCCGAGCGGCCGGACGGATCGATCCAGATCGAGGATTGCGAGGCGATCTCGAAGGCCCTG
TCGCCGGTGCTCGATGTCGCCGATCCGATCGACAAGGCCTATCGGCTGGAAATCTCGTCACCCGGCATCGACCGGCCGCT
GGTGCGCCGATCCGATTTCGAACGCTACGCCGGTCACCTCGCGAAGATCGAGATGGCGGTCGCCCATCAGGGCCGCAAGC
GGTTCCGCGGCGTTCTTCAGGGCGTCGAGGACAACGCGGTGCGCCTGCATCGGGACGACATCCGGAATAATGACGACGAA
AGCGAGGTCATGCTCGTCATGGAGGATATCGCCGACGCCCGGCTGGTTCTGACCGACGAATTGATCGCGGAATCGATGCG
CCGGGGCAAGATCGCGGAACGCGAGATGAAGCAAAGCCTCGGAATTCTGCCGCCGCCTCCGCCGCACGCGAAAACCGATC
CGGCAAAGCGCGGCACACCGAAACCGAAACTCGAGAACGGCAAGAAAGCACCGGGGAAAATCCCGCCGAAGAACACCAAG
GAACATCGTCTGGCCGCGGAACGACTGCGGCGCGGCGACATCGATCCCATCGAAGGAGAATAA

Upstream 100 bases:

>100_bases
TGGACCCCATGCACGGGTTCCTTCAAGCAGCAACCGCCGATCGGGCGACAACGCGGTGGACGCCGTCCGCCACCATCAGG
CTAATTCTTTGATCTTGAAC

Downstream 100 bases:

>100_bases
GTCATGGCCGCCGTCAGCGCCAATAAGCTCGAACTGCTGCAGATCGCAGACGCGGTGGCGCGCGAAAAGACCATCGACCG
CGGCATCGTGATCGCGGCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MTDPSAQNPDHELLDEPRLVVEPGVAARVAAIAAPVLQGMGYRLVRIKVSGEAGCTVQIMAERPDGSIQIEDCEAISKAL
SPVLDVADPIDKAYRLEISSPGIDRPLVRRSDFERYAGHLAKIEMAVAHQGRKRFRGVLQGVEDNAVRLHRDDIRNNDDE
SEVMLVMEDIADARLVLTDELIAESMRRGKIAEREMKQSLGILPPPPPHAKTDPAKRGTPKPKLENGKKAPGKIPPKNTK
EHRLAAERLRRGDIDPIEGE

Sequences:

>Translated_260_residues
MTDPSAQNPDHELLDEPRLVVEPGVAARVAAIAAPVLQGMGYRLVRIKVSGEAGCTVQIMAERPDGSIQIEDCEAISKAL
SPVLDVADPIDKAYRLEISSPGIDRPLVRRSDFERYAGHLAKIEMAVAHQGRKRFRGVLQGVEDNAVRLHRDDIRNNDDE
SEVMLVMEDIADARLVLTDELIAESMRRGKIAEREMKQSLGILPPPPPHAKTDPAKRGTPKPKLENGKKAPGKIPPKNTK
EHRLAAERLRRGDIDPIEGE
>Mature_259_residues
TDPSAQNPDHELLDEPRLVVEPGVAARVAAIAAPVLQGMGYRLVRIKVSGEAGCTVQIMAERPDGSIQIEDCEAISKALS
PVLDVADPIDKAYRLEISSPGIDRPLVRRSDFERYAGHLAKIEMAVAHQGRKRFRGVLQGVEDNAVRLHRDDIRNNDDES
EVMLVMEDIADARLVLTDELIAESMRRGKIAEREMKQSLGILPPPPPHAKTDPAKRGTPKPKLENGKKAPGKIPPKNTKE
HRLAAERLRRGDIDPIEGE

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

Organism=Escherichia coli, GI226510978, Length=112, Percent_Identity=39.2857142857143, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_NITWN (Q3SWQ2)

Other databases:

- EMBL:   CP000115
- RefSeq:   YP_316641.1
- ProteinModelPortal:   Q3SWQ2
- SMR:   Q3SWQ2
- STRING:   Q3SWQ2
- GeneID:   3676461
- GenomeReviews:   CP000115_GR
- KEGG:   nwi:Nwi_0021
- NMPDR:   fig|323098.3.peg.19
- eggNOG:   COG0779
- HOGENOM:   HBG668072
- OMA:   CTVQIMA
- PhylomeDB:   Q3SWQ2
- ProtClustDB:   PRK00092
- BioCyc:   NWIN323098:NWI_0021-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 28649; Mature: 28518

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDPSAQNPDHELLDEPRLVVEPGVAARVAAIAAPVLQGMGYRLVRIKVSGEAGCTVQIM
CCCCCCCCCCHHHHCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEE
AERPDGSIQIEDCEAISKALSPVLDVADPIDKAYRLEISSPGIDRPLVRRSDFERYAGHL
EECCCCCEEEHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
AKIEMAVAHQGRKRFRGVLQGVEDNAVRLHRDDIRNNDDESEVMLVMEDIADARLVLTDE
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHCCCCCCCHHHHHHHHHHCCCEEHHHHH
LIAESMRRGKIAEREMKQSLGILPPPPPHAKTDPAKRGTPKPKLENGKKAPGKIPPKNTK
HHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
EHRLAAERLRRGDIDPIEGE
HHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TDPSAQNPDHELLDEPRLVVEPGVAARVAAIAAPVLQGMGYRLVRIKVSGEAGCTVQIM
CCCCCCCCCHHHHCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEE
AERPDGSIQIEDCEAISKALSPVLDVADPIDKAYRLEISSPGIDRPLVRRSDFERYAGHL
EECCCCCEEEHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
AKIEMAVAHQGRKRFRGVLQGVEDNAVRLHRDDIRNNDDESEVMLVMEDIADARLVLTDE
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHCCCCCCCHHHHHHHHHHCCCEEHHHHH
LIAESMRRGKIAEREMKQSLGILPPPPPHAKTDPAKRGTPKPKLENGKKAPGKIPPKNTK
HHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
EHRLAAERLRRGDIDPIEGE
HHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA