Click here to switch to the map view.

The map label for this gene is ybeY [C]

Identifier: 75674215

GI number: 75674215

Start: 16416

End: 16988

Strand: Direct

Name: ybeY [C]

Synonym: Nwi_0016

Alternate gene names: 75674215

Gene position: 16416-16988 (Clockwise)

Preceding gene: 75674214

Following gene: 75674216

Centisome position: 0.48

GC content: 63.35

Gene sequence:

>573_bases
ATGCCGAACATTACGTGCAGGGAACAGCCGGCCCGCGCAAGGCGCGGCGGCGAGAAACACATCATGATCCGCTCCGCTAC
TCCCGTGACTGAAATTCTCGTCGTCGCCGATTGCTGGCGCGCAGAGGCGGGTGCCGAGGCCGTCATTCATCGCGCCATCG
CCACCGCCGCCGGGATGGTCGATAAGGACACCGGCGATGCCGAGCTTGCGATCATGCTGACCGATGACGCCGGAATCCGC
ACGCTCAACGCCAACTGGCGCGGTCTCGACAAGCCGACCAATGTCCTGTCGTTCCCGGCGTTGCAGCCGACCGGTCCGTG
CCTGCCCGACGATCCGCCGCGTATGCTCGGGGACATTGCGATCGCCTATGAAACCCTGCGCCGCGAGGCCGGTGACGAAC
GCAAGACCTTCGATCATCACCTCAGCCATCTTGCCGTCCACGGCTTCCTGCATCTGATCGGTTACGACCACGAGACCGAC
GGGGAAGCCGAGGAAATGGAAAGTCTCGAACGTCAAATTCTGGCGCAGCTCGGAATCCCTGATCCCTATGCGCCCCCGGA
ACGGATGACCTGA

Upstream 100 bases:

>100_bases
TGACGTTCATCGCCGAGGACGTGATCCGTCATGAACTGGTGGCGCGGATCGTCGCCGCCTATGAGGGGCTGCCGCCACGG
CCGGCAGCCGGCAAGCCTTG

Downstream 100 bases:

>100_bases
GTGCCTTCGGAGGACCAGACCAGCGAGAGCCCGCCGGCGCAGGAGAGCCGCAACCTGCCGGTGCCGGTGCACAATGGCGA
GGTTTTGCGCCCGGCCCCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MPNITCREQPARARRGGEKHIMIRSATPVTEILVVADCWRAEAGAEAVIHRAIATAAGMVDKDTGDAELAIMLTDDAGIR
TLNANWRGLDKPTNVLSFPALQPTGPCLPDDPPRMLGDIAIAYETLRREAGDERKTFDHHLSHLAVHGFLHLIGYDHETD
GEAEEMESLERQILAQLGIPDPYAPPERMT

Sequences:

>Translated_190_residues
MPNITCREQPARARRGGEKHIMIRSATPVTEILVVADCWRAEAGAEAVIHRAIATAAGMVDKDTGDAELAIMLTDDAGIR
TLNANWRGLDKPTNVLSFPALQPTGPCLPDDPPRMLGDIAIAYETLRREAGDERKTFDHHLSHLAVHGFLHLIGYDHETD
GEAEEMESLERQILAQLGIPDPYAPPERMT
>Mature_189_residues
PNITCREQPARARRGGEKHIMIRSATPVTEILVVADCWRAEAGAEAVIHRAIATAAGMVDKDTGDAELAIMLTDDAGIRT
LNANWRGLDKPTNVLSFPALQPTGPCLPDDPPRMLGDIAIAYETLRREAGDERKTFDHHLSHLAVHGFLHLIGYDHETDG
EAEEMESLERQILAQLGIPDPYAPPERMT

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=118, Percent_Identity=45.7627118644068, Blast_Score=91, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_NITWN (Q3SWQ7)

Other databases:

- EMBL:   CP000115
- RefSeq:   YP_316636.1
- ProteinModelPortal:   Q3SWQ7
- SMR:   Q3SWQ7
- STRING:   Q3SWQ7
- GeneID:   3676456
- GenomeReviews:   CP000115_GR
- KEGG:   nwi:Nwi_0016
- NMPDR:   fig|323098.3.peg.13
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   ELAIMLT
- PhylomeDB:   Q3SWQ7
- ProtClustDB:   CLSK818282
- BioCyc:   NWIN323098:NWI_0016-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 20879; Mature: 20748

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNITCREQPARARRGGEKHIMIRSATPVTEILVVADCWRAEAGAEAVIHRAIATAAGMV
CCCCCCCCCCHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
DKDTGDAELAIMLTDDAGIRTLNANWRGLDKPTNVLSFPALQPTGPCLPDDPPRMLGDIA
CCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHH
IAYETLRREAGDERKTFDHHLSHLAVHGFLHLIGYDHETDGEAEEMESLERQILAQLGIP
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
DPYAPPERMT
CCCCCCCCCC
>Mature Secondary Structure 
PNITCREQPARARRGGEKHIMIRSATPVTEILVVADCWRAEAGAEAVIHRAIATAAGMV
CCCCCCCCCHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
DKDTGDAELAIMLTDDAGIRTLNANWRGLDKPTNVLSFPALQPTGPCLPDDPPRMLGDIA
CCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHH
IAYETLRREAGDERKTFDHHLSHLAVHGFLHLIGYDHETDGEAEEMESLERQILAQLGIP
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
DPYAPPERMT
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA