| Definition | Ralstonia eutropha JMP134 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007347 |
| Length | 3,806,533 |
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The map label for this gene is appF [H]
Identifier: 73542686
GI number: 73542686
Start: 3298264
End: 3299322
Strand: Reverse
Name: appF [H]
Synonym: Reut_A3002
Alternate gene names: 73542686
Gene position: 3299322-3298264 (Counterclockwise)
Preceding gene: 73542687
Following gene: 73542684
Centisome position: 86.68
GC content: 64.68
Gene sequence:
>1059_bases ATGAGCGAAACGGACCTCGATATGCCAGCCATGATAGAAGGGACTTCGCAGCCCGTTACGCCACCAGCGCCGCTGCTGGA GTTGCGCGGCGTTTCCAAGCGCTTCGTCAAATCGCTTGATACGGCGGCGCGCATCGCAAACCTGTTCGGTGCACATGCGC GCGAAGAGGTGGTGCATGCGGTCGACCGCGTTGACCTGAGCATCCGTACGGGCGAGGTGGTGGGGCTCGTGGGCGAGTCG GGCTGCGGCAAATCCACGCTCGGCCGCATGGCTGTGGGCCTGCATACGCTGAGCGAGGGCGAGCGGTTCTGGCGCGGTAC TAACCTCGATCACCTGCCGCTCGAGAAGCGCCGCGAGAAGCAGCTCGCGATCCAGATGATCTTCCAGGACCCGTATGCCT CGCTCAATCCGCGGCTGCGCGTGATCGACATCGTCGGCGAGGCGCCGGTCGTGCACGGCATGATCGCGCGCGGCGAGCAG AAGGCCTATGTGGAAGACATGCTCGTGCGTGTGGGGATGGATCCGACCGTGCTGCGCCGCTTCCCGCACCAGTTCTCAGG TGGCCAGCGCGCGCGCATCGGCATTGCCCGCGCGCTGGCGGTGAAGCCAGAGTTCCTCGTGTGCGATGAATCGGTCGCGG CGCTCGACGTATCGATCCAGGCCCAGGTGCTGAACCTGTTCATGGGGCTGCGCCAGGAACTGAACCTGACCTACCTGTTC ATCAGCCACGACCTCGGGGTGGTCAAGCACATCAGCGACCGCGTGGTGATCATGTACCTGGGGCGCGTGGTGGAGTCGGC GCCGACCGAGCAGGTATTCGCTGCACCGAACCATCCCTATACGCAGGCCTTGCTGGCCGAGGCGCCGAAGCTCGAAGTCG GCAAAAAGACCTATGTGGCGATCCGTGGCGAGATCCCGTCGCCATTGAATCCGCCGACGGGCTGCCACTTCCATCCGCGC TGCCCGCATGCGATGCCGCGTTGCACGACCGAACAGCCGCTGTTGAAGGAGATCGCGCCGGGCAGGCTATCGGCGTGTCA CCTGAACGATATGGCGTAG
Upstream 100 bases:
>100_bases ACGCCACCGAGGTGTGCAGAACGGACCCGCCGCTGGAGACCGCGCCCGACGGCAGGCGGCTGCGTTGCTTCCATCCGATG CTGACACAGCAGGAGGCGGC
Downstream 100 bases:
>100_bases ATCGATCCAGCGATCCTCTTGTTTTCTCCCTCTCCCATTAAGGGGGGAGGGAGAAAGCCGCGTGATTCGCAGCCACTCAG CGAATCACCTGCCCCTTCGA
Product: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 352; Mature: 351
Protein sequence:
>352_residues MSETDLDMPAMIEGTSQPVTPPAPLLELRGVSKRFVKSLDTAARIANLFGAHAREEVVHAVDRVDLSIRTGEVVGLVGES GCGKSTLGRMAVGLHTLSEGERFWRGTNLDHLPLEKRREKQLAIQMIFQDPYASLNPRLRVIDIVGEAPVVHGMIARGEQ KAYVEDMLVRVGMDPTVLRRFPHQFSGGQRARIGIARALAVKPEFLVCDESVAALDVSIQAQVLNLFMGLRQELNLTYLF ISHDLGVVKHISDRVVIMYLGRVVESAPTEQVFAAPNHPYTQALLAEAPKLEVGKKTYVAIRGEIPSPLNPPTGCHFHPR CPHAMPRCTTEQPLLKEIAPGRLSACHLNDMA
Sequences:
>Translated_352_residues MSETDLDMPAMIEGTSQPVTPPAPLLELRGVSKRFVKSLDTAARIANLFGAHAREEVVHAVDRVDLSIRTGEVVGLVGES GCGKSTLGRMAVGLHTLSEGERFWRGTNLDHLPLEKRREKQLAIQMIFQDPYASLNPRLRVIDIVGEAPVVHGMIARGEQ KAYVEDMLVRVGMDPTVLRRFPHQFSGGQRARIGIARALAVKPEFLVCDESVAALDVSIQAQVLNLFMGLRQELNLTYLF ISHDLGVVKHISDRVVIMYLGRVVESAPTEQVFAAPNHPYTQALLAEAPKLEVGKKTYVAIRGEIPSPLNPPTGCHFHPR CPHAMPRCTTEQPLLKEIAPGRLSACHLNDMA >Mature_351_residues SETDLDMPAMIEGTSQPVTPPAPLLELRGVSKRFVKSLDTAARIANLFGAHAREEVVHAVDRVDLSIRTGEVVGLVGESG CGKSTLGRMAVGLHTLSEGERFWRGTNLDHLPLEKRREKQLAIQMIFQDPYASLNPRLRVIDIVGEAPVVHGMIARGEQK AYVEDMLVRVGMDPTVLRRFPHQFSGGQRARIGIARALAVKPEFLVCDESVAALDVSIQAQVLNLFMGLRQELNLTYLFI SHDLGVVKHISDRVVIMYLGRVVESAPTEQVFAAPNHPYTQALLAEAPKLEVGKKTYVAIRGEIPSPLNPPTGCHFHPRC PHAMPRCTTEQPLLKEIAPGRLSACHLNDMA
Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin
COG id: COG4608
COG function: function code E; ABC-type oligopeptide transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9961252, Length=210, Percent_Identity=29.5238095238095, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI4505771, Length=210, Percent_Identity=29.5238095238095, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI9961250, Length=210, Percent_Identity=29.5238095238095, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI171184400, Length=261, Percent_Identity=28.3524904214559, Blast_Score=69, Evalue=8e-12, Organism=Homo sapiens, GI42741659, Length=207, Percent_Identity=29.951690821256, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI9955968, Length=221, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI9955966, Length=221, Percent_Identity=30.316742081448, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI45243524, Length=221, Percent_Identity=30.316742081448, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI1789962, Length=303, Percent_Identity=45.8745874587459, Blast_Score=276, Evalue=1e-75, Organism=Escherichia coli, GI1787500, Length=286, Percent_Identity=48.2517482517483, Blast_Score=273, Evalue=2e-74, Organism=Escherichia coli, GI1787758, Length=280, Percent_Identity=43.9285714285714, Blast_Score=239, Evalue=1e-64, Organism=Escherichia coli, GI145693107, Length=290, Percent_Identity=43.448275862069, Blast_Score=219, Evalue=2e-58, Organism=Escherichia coli, GI1789963, Length=296, Percent_Identity=40.8783783783784, Blast_Score=218, Evalue=4e-58, Organism=Escherichia coli, GI48994883, Length=298, Percent_Identity=41.9463087248322, Blast_Score=218, Evalue=6e-58, Organism=Escherichia coli, GI1788506, Length=232, Percent_Identity=43.5344827586207, Blast_Score=182, Evalue=3e-47, Organism=Escherichia coli, GI1787548, Length=345, Percent_Identity=32.463768115942, Blast_Score=167, Evalue=8e-43, Organism=Escherichia coli, GI1787759, Length=288, Percent_Identity=37.1527777777778, Blast_Score=167, Evalue=1e-42, Organism=Escherichia coli, GI1789891, Length=218, Percent_Identity=41.743119266055, Blast_Score=165, Evalue=4e-42, Organism=Escherichia coli, GI1787547, Length=264, Percent_Identity=32.9545454545455, Blast_Score=158, Evalue=4e-40, Organism=Escherichia coli, GI48994997, Length=224, Percent_Identity=35.2678571428571, Blast_Score=132, Evalue=3e-32, Organism=Escherichia coli, GI1787370, Length=258, Percent_Identity=31.3953488372093, Blast_Score=127, Evalue=1e-30, Organism=Escherichia coli, GI87081709, Length=291, Percent_Identity=30.2405498281787, Blast_Score=121, Evalue=5e-29, Organism=Escherichia coli, GI1786398, Length=297, Percent_Identity=29.96632996633, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1787712, Length=231, Percent_Identity=32.9004329004329, Blast_Score=119, Evalue=4e-28, Organism=Escherichia coli, GI87081791, Length=274, Percent_Identity=30.6569343065693, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1788225, Length=248, Percent_Identity=31.4516129032258, Blast_Score=114, Evalue=1e-26, Organism=Escherichia coli, GI1788761, Length=254, Percent_Identity=30.3149606299213, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1789672, Length=229, Percent_Identity=32.3144104803493, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1787029, Length=222, Percent_Identity=31.0810810810811, Blast_Score=107, Evalue=2e-24, Organism=Escherichia coli, GI1789032, Length=227, Percent_Identity=31.2775330396476, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1789890, Length=238, Percent_Identity=31.0924369747899, Blast_Score=102, Evalue=5e-23, Organism=Escherichia coli, GI1788644, Length=257, Percent_Identity=29.9610894941634, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1788450, Length=247, Percent_Identity=27.9352226720648, Blast_Score=99, Evalue=6e-22, Organism=Escherichia coli, GI1790467, Length=242, Percent_Identity=30.1652892561983, Blast_Score=98, Evalue=8e-22, Organism=Escherichia coli, GI1786872, Length=214, Percent_Identity=32.2429906542056, Blast_Score=98, Evalue=8e-22, Organism=Escherichia coli, GI1787089, Length=224, Percent_Identity=33.4821428571429, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1787164, Length=219, Percent_Identity=33.3333333333333, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI87082267, Length=253, Percent_Identity=29.2490118577075, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1790162, Length=236, Percent_Identity=27.9661016949153, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI48995001, Length=209, Percent_Identity=29.1866028708134, Blast_Score=90, Evalue=3e-19, Organism=Escherichia coli, GI1786563, Length=211, Percent_Identity=31.2796208530806, Blast_Score=89, Evalue=5e-19, Organism=Escherichia coli, GI1786253, Length=213, Percent_Identity=28.169014084507, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI1786703, Length=207, Percent_Identity=31.4009661835749, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786345, Length=213, Percent_Identity=32.3943661971831, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI87081834, Length=210, Percent_Identity=30.4761904761905, Blast_Score=81, Evalue=9e-17, Organism=Escherichia coli, GI1789873, Length=211, Percent_Identity=32.2274881516588, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786698, Length=199, Percent_Identity=28.1407035175879, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1790544, Length=253, Percent_Identity=30.4347826086957, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI48994943, Length=213, Percent_Identity=28.6384976525822, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1787143, Length=217, Percent_Identity=31.3364055299539, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1787792, Length=224, Percent_Identity=28.125, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI1789864, Length=243, Percent_Identity=27.5720164609054, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787105, Length=250, Percent_Identity=28, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1786981, Length=212, Percent_Identity=31.6037735849057, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1788053, Length=188, Percent_Identity=31.3829787234043, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1790739, Length=236, Percent_Identity=28.8135593220339, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1790525, Length=230, Percent_Identity=26.5217391304348, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1789991, Length=223, Percent_Identity=28.2511210762332, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1786654, Length=224, Percent_Identity=25.4464285714286, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1786803, Length=219, Percent_Identity=26.4840182648402, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1789593, Length=211, Percent_Identity=26.0663507109005, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1790534, Length=238, Percent_Identity=26.0504201680672, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1786653, Length=216, Percent_Identity=28.2407407407407, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1788897, Length=289, Percent_Identity=25.6055363321799, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI193202349, Length=226, Percent_Identity=27.4336283185841, Blast_Score=81, Evalue=7e-16, Organism=Caenorhabditis elegans, GI193208177, Length=246, Percent_Identity=27.6422764227642, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI193209708, Length=218, Percent_Identity=30.2752293577982, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI25146777, Length=216, Percent_Identity=27.3148148148148, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17558664, Length=220, Percent_Identity=30, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI193211017, Length=216, Percent_Identity=26.3888888888889, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI193211015, Length=216, Percent_Identity=26.3888888888889, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI71996809, Length=216, Percent_Identity=26.3888888888889, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI212646699, Length=232, Percent_Identity=25.4310344827586, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17567265, Length=274, Percent_Identity=25.1824817518248, Blast_Score=69, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17541710, Length=285, Percent_Identity=27.719298245614, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17569143, Length=243, Percent_Identity=26.3374485596708, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115533592, Length=226, Percent_Identity=29.2035398230088, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17569145, Length=204, Percent_Identity=28.921568627451, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=228, Percent_Identity=30.7017543859649, Blast_Score=72, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6324985, Length=235, Percent_Identity=26.3829787234043, Blast_Score=71, Evalue=2e-13, Organism=Drosophila melanogaster, GI85726357, Length=243, Percent_Identity=28.3950617283951, Blast_Score=86, Evalue=4e-17, Organism=Drosophila melanogaster, GI24641565, Length=226, Percent_Identity=29.646017699115, Blast_Score=75, Evalue=7e-14, Organism=Drosophila melanogaster, GI17136662, Length=233, Percent_Identity=28.3261802575107, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI24659289, Length=229, Percent_Identity=27.9475982532751, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI281363262, Length=207, Percent_Identity=28.9855072463768, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24653245, Length=207, Percent_Identity=28.9855072463768, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 38717; Mature: 38585
Theoretical pI: Translated: 7.65; Mature: 7.65
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSETDLDMPAMIEGTSQPVTPPAPLLELRGVSKRFVKSLDTAARIANLFGAHAREEVVHA CCCCCCCCCCEECCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH VDRVDLSIRTGEVVGLVGESGCGKSTLGRMAVGLHTLSEGERFWRGTNLDHLPLEKRREK HHHHCEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHH QLAIQMIFQDPYASLNPRLRVIDIVGEAPVVHGMIARGEQKAYVEDMLVRVGMDPTVLRR HHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHH FPHQFSGGQRARIGIARALAVKPEFLVCDESVAALDVSIQAQVLNLFMGLRQELNLTYLF CCHHHCCCCEEHHHHHHHHCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHHCCEEEEE ISHDLGVVKHISDRVVIMYLGRVVESAPTEQVFAAPNHPYTQALLAEAPKLEVGKKTYVA EECCCHHHHHHCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHCCCCCCCCCEEEEE IRGEIPSPLNPPTGCHFHPRCPHAMPRCTTEQPLLKEIAPGRLSACHLNDMA EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCC >Mature Secondary Structure SETDLDMPAMIEGTSQPVTPPAPLLELRGVSKRFVKSLDTAARIANLFGAHAREEVVHA CCCCCCCCCEECCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH VDRVDLSIRTGEVVGLVGESGCGKSTLGRMAVGLHTLSEGERFWRGTNLDHLPLEKRREK HHHHCEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHH QLAIQMIFQDPYASLNPRLRVIDIVGEAPVVHGMIARGEQKAYVEDMLVRVGMDPTVLRR HHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHH FPHQFSGGQRARIGIARALAVKPEFLVCDESVAALDVSIQAQVLNLFMGLRQELNLTYLF CCHHHCCCCEEHHHHHHHHCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHHCCEEEEE ISHDLGVVKHISDRVVIMYLGRVVESAPTEQVFAAPNHPYTQALLAEAPKLEVGKKTYVA EECCCHHHHHHCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHCCCCCCCCCEEEEE IRGEIPSPLNPPTGCHFHPRCPHAMPRCTTEQPLLKEIAPGRLSACHLNDMA EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7997159; 9384377 [H]