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The map label for this gene is soxR [C]

Identifier: 73542586

GI number: 73542586

Start: 3179470

End: 3179901

Strand: Reverse

Name: soxR [C]

Synonym: Reut_A2902

Alternate gene names: 73542586

Gene position: 3179901-3179470 (Counterclockwise)

Preceding gene: 73542591

Following gene: 73542585

Centisome position: 83.54

GC content: 64.58

Gene sequence:

>432_bases
ATGGATATCGCGGAAGTCGCAAAGCGCACGGGCGTGCCCGCCTCGACACTGCGCTACTACGAGAAGATGGGGCTGATCGT
GTCGCTGGGGCCGCAGGGCGCACGGCGCAGCTTTGCCGATAACGTGGTGGATCAGCTCGCGTTGATCTCGCTCGGGCAGG
CTGCGGGGCTCTCGCTGGAAGAGATTCGGTCGATGTTCTCGCCAGACGGGCAGCCGAACATCGACAGGCAGATGCTGGTG
GAGAAGGCTGACGAGATCGACGCGCTGATCAAGCGGCTCCGCGCGATGAGCCACGGTCTGCGGCATGCGGCGGCTTGTCC
TGCGCCTAGCCATGCCGAATGCCCGACCTTTCGCAAGCTGCTCAAGGCCGCGTCGTCTGGCGCGATTGGGAAAGGGCTGG
TGAATGTGGAGTTGAAGCGGCGGGCCAGGTAG

Upstream 100 bases:

>100_bases
ATATCTGGCAGGCGAGTCATGAGGGGCCCTTTTGTTTGACTTGCGGAAGCGATGTGGCCACTATAGAAGTTGAAGTCAAC
TTCAAGTCAAGGGTGTTCGG

Downstream 100 bases:

>100_bases
CGCTTCGGGGTCGGACGGGACCGGAAGATCCAGCCCGCTGCGGAAGCGCCGGCATCGTTTGTGCTCCAACAGGTGGCCCT
GTGTCATGGCGGCGATTCAG

Product: regulatory protein, MerR

Products: NA

Alternate protein names: Transcriptional Regulator MerR Family; Transcriptional Regulator; Cu(I)-Responsive Transcriptional Regulator; Transcriptional Regulator MerR Family Protein; Regulatory Protein; Regulatory Protein MerR; Redox-Sensitive Transcriptional Activator; MerR Family Regulatory Protein; MerR-Family Transcriptional Regulator; Zn(II)-Responsive Transcriptional Regulator; Redox-Sensitive Transcriptional Activator SoxR; SoxR Family Transcriptional Regulator; Transcriptional Regulator Merr Family; MerR Family Regulatory Family; HTH-Type Transcriptional Regulator CueR

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MDIAEVAKRTGVPASTLRYYEKMGLIVSLGPQGARRSFADNVVDQLALISLGQAAGLSLEEIRSMFSPDGQPNIDRQMLV
EKADEIDALIKRLRAMSHGLRHAAACPAPSHAECPTFRKLLKAASSGAIGKGLVNVELKRRAR

Sequences:

>Translated_143_residues
MDIAEVAKRTGVPASTLRYYEKMGLIVSLGPQGARRSFADNVVDQLALISLGQAAGLSLEEIRSMFSPDGQPNIDRQMLV
EKADEIDALIKRLRAMSHGLRHAAACPAPSHAECPTFRKLLKAASSGAIGKGLVNVELKRRAR
>Mature_143_residues
MDIAEVAKRTGVPASTLRYYEKMGLIVSLGPQGARRSFADNVVDQLALISLGQAAGLSLEEIRSMFSPDGQPNIDRQMLV
EKADEIDALIKRLRAMSHGLRHAAACPAPSHAECPTFRKLLKAASSGAIGKGLVNVELKRRAR

Specific function: Activates The Transcription Of The Soxs Gene Which Itself Controls The Superoxide Response Regulon. Soxr Contains A 2fe-2s Iron-Sulfur Cluster That May Act As A Redox Sensor System That Recognizes Superoxide. The Variable Redox State Of The Fe-S Cluster I

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15436; Mature: 15436

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIAEVAKRTGVPASTLRYYEKMGLIVSLGPQGARRSFADNVVDQLALISLGQAAGLSLE
CCHHHHHHHCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
EIRSMFSPDGQPNIDRQMLVEKADEIDALIKRLRAMSHGLRHAAACPAPSHAECPTFRKL
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
LKAASSGAIGKGLVNVELKRRAR
HHHHCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MDIAEVAKRTGVPASTLRYYEKMGLIVSLGPQGARRSFADNVVDQLALISLGQAAGLSLE
CCHHHHHHHCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
EIRSMFSPDGQPNIDRQMLVEKADEIDALIKRLRAMSHGLRHAAACPAPSHAECPTFRKL
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
LKAASSGAIGKGLVNVELKRRAR
HHHHCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA