Click here to switch to the map view.

The map label for this gene is secD [H]

Identifier: 73542495

GI number: 73542495

Start: 3080117

End: 3081982

Strand: Direct

Name: secD [H]

Synonym: Reut_A2810

Alternate gene names: 73542495

Gene position: 3080117-3081982 (Clockwise)

Preceding gene: 73542494

Following gene: 73542496

Centisome position: 80.92

GC content: 65.49

Gene sequence:

>1866_bases
ATGAATCGTTATCCGCTTTGGAAATATGTCGTGATCCTGGTGGCCCTGGCCATCGGCATCATCTATACCCTGCCGAACTT
CTTCGGCGAGGCGCCTGCCGTGCAGGTCTCCTCGGGAAAGGCCACGGTCAAGGTGGACCTCTCCATGCAAAAGCATGTGG
AGGAAATCCTGGCCCAGAACCAGCTCCAGCCTGACGGCGTGTTCTTCGATGTATCGGGCCAGTCCGGCTCGGTCAAGGCG
CGCTTCCGTACCACCGACGACCAGCTCAAGGCCAAGGACGTCTTGTCGCGCGCGCTCAATCCGGACGCTACCGATCCGAC
TTACGTGGTCGCGCTGAACCTGCTCTCCGGCTCGCCGCGCTGGCTGACCGCGATGCATGCGCTGCCAATGTACCTGGGCC
TGGACCTGCGCGGCGGCGTGCACTTCCTGCTGCAGGTCGACATGAAGGGTGCCGTCGACAAGAAGCTCGACAGCCTGGCG
GGCGATGCCCGCACCCTGCTGCGCGACAAGAACGTGCGCCACGGCGGCATCGACCGCGACGGCGACAAGCTGACCGTGCG
CTTCAACAATGCCGACGACGCCAACCGCGCGCGCGGTATCCTGGCCGACAACCTGCGCGAACTCGCCTTCGCGATGGACG
GCAACAACGTGGTCGGCACCTTCACCGAAGCCGCCCGCAAGGCCGTGCAGGACGCCGCCGTCAAGCAGAACATCACCACG
CTGCACAACCGCGTGAACGAACTCGGCGTGGCCGAGCCGGTGATCCAGCAGCAAGGCGCCGACCGCATCGTGGTCCAGCT
GCCTGGCGTGCAGGACACCGCCAAGGCCAAGGACATCATCGGCCGCACCGCCACGCTGGAAGCCCGCCTGGCCGATCCGG
ACGCACCGCGCAACCCGCGCGCAGGCGACCCGGTTCCGTTCGGCAGCGAGCTGTTCACGCAAGGCAACGGCGCCCCAGTC
GTGCTGAAGAAGCAAGTCATCTTCACCGGCGACCGCATCGAAAGCGCATCGGCCGGCTTCGACCAGAACCAGCGCCCGTC
GGTCAACATCAAGCTCGACGCCCAGGGCGGCCGCGTGCTGCGCGACGTCTCGCGCGAGAACATCGGCAAGCCGATGGGCA
TCGTGCTGTTCGAAAAGGGCAAGGGCGAGGTGCTGACGGTCGCGACGATCCAGTCCGAACTCGGCTCGAGCTTCCAGATC
ACCGGCTCCTACTCGACCGAAGCGGCCAACGACCTCGCGCTGCTGCTGCGCGCCGGCTCGCTGGCCGCGCCGATGGAGAT
CATCGAGGAACGCACGATCGGCCCGTCGTTGGGCGCGGACAACATCCAGAAGGGCTTTGACTCGGTGGCTTACGGCTTCG
GTGCCATCACCGTGTTCATGGTGCTGTACTACATGCTGTTCGGCGTGTTCTCGGTCGCGGCGCTAGGCATCAACCTGCTG
CTGCTGATCGCTGTGCTGTCGATGCTGCAGGCCACGCTCACGCTGCCAGGTATTGCCGCTATCGCGCTGGTGCTGGGTAT
GGCCATCGACGCGAACGTGCTGATCAACGAACGTATCCGCGAGGAACTACGCGCGGGTGCTTCGCCGCAGATGGCCATCG
CCGTCGGCTTCGAACGCGCCTGGGCCACCATCCTGGACTCCAACGTCACCACGCTGATCGCGGGCCTGGCGCTGCTGGCG
TTCGGCTCCGGCCCGGTGCGCGGCTTTGCCGTGGTGCACTGCCTGGGCATCCTGACCTCGATGTTCTCGGCGGTGTTCTT
CAACCGCGGCCTGGTCAACCTCTGGTACGGCCGCAAGAAGAAGCTGCAGAGCGTGGCCATCGGCCAGATCTGGAAACCGG
GTGCGGACTCCCCGGTCGCCAAGTAA

Upstream 100 bases:

>100_bases
TTCGTGGCGGCCAGGCGGCTGTTTGCCAACCGGTCCGGCCCCGACGGAGTGCCTCCAAGGCTCCCGGCGGACCCGCCAAC
CGCAGAATGACTGGCCAGAG

Downstream 100 bases:

>100_bases
GCACCGATTCATCAGGACAACATCATGGAATTCTTCCGCATCCGGCGCGACATTCCGTTCATGAAGCACGCGTTGATCTT
CAACGTGGTCTCCTTCCTGA

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 621; Mature: 621

Protein sequence:

>621_residues
MNRYPLWKYVVILVALAIGIIYTLPNFFGEAPAVQVSSGKATVKVDLSMQKHVEEILAQNQLQPDGVFFDVSGQSGSVKA
RFRTTDDQLKAKDVLSRALNPDATDPTYVVALNLLSGSPRWLTAMHALPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSLA
GDARTLLRDKNVRHGGIDRDGDKLTVRFNNADDANRARGILADNLRELAFAMDGNNVVGTFTEAARKAVQDAAVKQNITT
LHNRVNELGVAEPVIQQQGADRIVVQLPGVQDTAKAKDIIGRTATLEARLADPDAPRNPRAGDPVPFGSELFTQGNGAPV
VLKKQVIFTGDRIESASAGFDQNQRPSVNIKLDAQGGRVLRDVSRENIGKPMGIVLFEKGKGEVLTVATIQSELGSSFQI
TGSYSTEAANDLALLLRAGSLAAPMEIIEERTIGPSLGADNIQKGFDSVAYGFGAITVFMVLYYMLFGVFSVAALGINLL
LLIAVLSMLQATLTLPGIAAIALVLGMAIDANVLINERIREELRAGASPQMAIAVGFERAWATILDSNVTTLIAGLALLA
FGSGPVRGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKKKLQSVAIGQIWKPGADSPVAK

Sequences:

>Translated_621_residues
MNRYPLWKYVVILVALAIGIIYTLPNFFGEAPAVQVSSGKATVKVDLSMQKHVEEILAQNQLQPDGVFFDVSGQSGSVKA
RFRTTDDQLKAKDVLSRALNPDATDPTYVVALNLLSGSPRWLTAMHALPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSLA
GDARTLLRDKNVRHGGIDRDGDKLTVRFNNADDANRARGILADNLRELAFAMDGNNVVGTFTEAARKAVQDAAVKQNITT
LHNRVNELGVAEPVIQQQGADRIVVQLPGVQDTAKAKDIIGRTATLEARLADPDAPRNPRAGDPVPFGSELFTQGNGAPV
VLKKQVIFTGDRIESASAGFDQNQRPSVNIKLDAQGGRVLRDVSRENIGKPMGIVLFEKGKGEVLTVATIQSELGSSFQI
TGSYSTEAANDLALLLRAGSLAAPMEIIEERTIGPSLGADNIQKGFDSVAYGFGAITVFMVLYYMLFGVFSVAALGINLL
LLIAVLSMLQATLTLPGIAAIALVLGMAIDANVLINERIREELRAGASPQMAIAVGFERAWATILDSNVTTLIAGLALLA
FGSGPVRGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKKKLQSVAIGQIWKPGADSPVAK
>Mature_621_residues
MNRYPLWKYVVILVALAIGIIYTLPNFFGEAPAVQVSSGKATVKVDLSMQKHVEEILAQNQLQPDGVFFDVSGQSGSVKA
RFRTTDDQLKAKDVLSRALNPDATDPTYVVALNLLSGSPRWLTAMHALPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSLA
GDARTLLRDKNVRHGGIDRDGDKLTVRFNNADDANRARGILADNLRELAFAMDGNNVVGTFTEAARKAVQDAAVKQNITT
LHNRVNELGVAEPVIQQQGADRIVVQLPGVQDTAKAKDIIGRTATLEARLADPDAPRNPRAGDPVPFGSELFTQGNGAPV
VLKKQVIFTGDRIESASAGFDQNQRPSVNIKLDAQGGRVLRDVSRENIGKPMGIVLFEKGKGEVLTVATIQSELGSSFQI
TGSYSTEAANDLALLLRAGSLAAPMEIIEERTIGPSLGADNIQKGFDSVAYGFGAITVFMVLYYMLFGVFSVAALGINLL
LLIAVLSMLQATLTLPGIAAIALVLGMAIDANVLINERIREELRAGASPQMAIAVGFERAWATILDSNVTTLIAGLALLA
FGSGPVRGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKKKLQSVAIGQIWKPGADSPVAK

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=623, Percent_Identity=43.9807383627608, Blast_Score=504, Evalue=1e-144,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 66556; Mature: 66556

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRYPLWKYVVILVALAIGIIYTLPNFFGEAPAVQVSSGKATVKVDLSMQKHVEEILAQN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCHHHHHHHHHHHC
QLQPDGVFFDVSGQSGSVKARFRTTDDQLKAKDVLSRALNPDATDPTYVVALNLLSGSPR
CCCCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCH
WLTAMHALPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSLAGDARTLLRDKNVRHGGIDRD
HHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GDKLTVRFNNADDANRARGILADNLRELAFAMDGNNVVGTFTEAARKAVQDAAVKQNITT
CCEEEEEECCCCCHHHHCCHHHHHHHHHHHEECCCCEEEHHHHHHHHHHHHHHHHHHHHH
LHNRVNELGVAEPVIQQQGADRIVVQLPGVQDTAKAKDIIGRTATLEARLADPDAPRNPR
HHHHHHHCCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCC
AGDPVPFGSELFTQGNGAPVVLKKQVIFTGDRIESASAGFDQNQRPSVNIKLDAQGGRVL
CCCCCCCCHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHH
RDVSRENIGKPMGIVLFEKGKGEVLTVATIQSELGSSFQITGSYSTEAANDLALLLRAGS
HHHHHHHCCCCCEEEEEECCCCCEEEEEEEHHHHCCCEEEECCCCCCHHHHHHHHHHCCC
LAAPMEIIEERTIGPSLGADNIQKGFDSVAYGFGAITVFMVLYYMLFGVFSVAALGINLL
CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLIAVLSMLQATLTLPGIAAIALVLGMAIDANVLINERIREELRAGASPQMAIAVGFERA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHH
WATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKK
HHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHH
KLQSVAIGQIWKPGADSPVAK
HHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MNRYPLWKYVVILVALAIGIIYTLPNFFGEAPAVQVSSGKATVKVDLSMQKHVEEILAQN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCHHHHHHHHHHHC
QLQPDGVFFDVSGQSGSVKARFRTTDDQLKAKDVLSRALNPDATDPTYVVALNLLSGSPR
CCCCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCH
WLTAMHALPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSLAGDARTLLRDKNVRHGGIDRD
HHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GDKLTVRFNNADDANRARGILADNLRELAFAMDGNNVVGTFTEAARKAVQDAAVKQNITT
CCEEEEEECCCCCHHHHCCHHHHHHHHHHHEECCCCEEEHHHHHHHHHHHHHHHHHHHHH
LHNRVNELGVAEPVIQQQGADRIVVQLPGVQDTAKAKDIIGRTATLEARLADPDAPRNPR
HHHHHHHCCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCC
AGDPVPFGSELFTQGNGAPVVLKKQVIFTGDRIESASAGFDQNQRPSVNIKLDAQGGRVL
CCCCCCCCHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHH
RDVSRENIGKPMGIVLFEKGKGEVLTVATIQSELGSSFQITGSYSTEAANDLALLLRAGS
HHHHHHHCCCCCEEEEEECCCCCEEEEEEEHHHHCCCEEEECCCCCCHHHHHHHHHHCCC
LAAPMEIIEERTIGPSLGADNIQKGFDSVAYGFGAITVFMVLYYMLFGVFSVAALGINLL
CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLIAVLSMLQATLTLPGIAAIALVLGMAIDANVLINERIREELRAGASPQMAIAVGFERA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHH
WATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKK
HHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHH
KLQSVAIGQIWKPGADSPVAK
HHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]