Definition | Ralstonia eutropha JMP134 chromosome 1, complete sequence. |
---|---|
Accession | NC_007347 |
Length | 3,806,533 |
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The map label for this gene is adhB [H]
Identifier: 73542202
GI number: 73542202
Start: 2757339
End: 2760269
Strand: Direct
Name: adhB [H]
Synonym: Reut_A2517
Alternate gene names: 73542202
Gene position: 2757339-2760269 (Clockwise)
Preceding gene: 73542201
Following gene: 73542203
Centisome position: 72.44
GC content: 68.51
Gene sequence:
>2931_bases GTGACCGACGCGCTGGCGCCCCGCATGACTGCCGCCACGCCTGCGATGACGGACAGTCGGCCACCCTTTGCGCAATGCCT GGCCGCACATGTGTTGCGACCGCCCGGACTGCGCTGGGCCGGTGGCCAGCCGCTGGTAGCGCGGCTGCTCGAAGCGAACC GCGACGCTGCAGCCGGCATGCCGGGCGTGCGTGCCGTGGTCATACGCAACAATTTCGCCGCCGCAGTAGCGGATTCGGCA GAACAAGCTGCACAGGGGATCGCTGCATTGCAGGCGCGTTGGGCGGCGCCGCCTGCGGCGGAAAACTCCCCCGTTCGTCG AGAGACGCTGGCGCAGCGGGGCAATGCATCCGCCGCGCTCGAACAATCGCACGCCCGGCAAGCGCAGCACTATCAATGGC CGTTGGCGGGCATGCAGGCGACCACTGCAACGTGCACGGCGATCGCCGACTGGCGAGACGGCGCGCTGCGCGTCTGGCTG CCGAGCACTCGCCCGGGCGGGTTGCGTGCCGAACTGGCCGCGCTGCTTGGCATCACTGAACAACAGATCACGCTGGTGTG CTGGCAAGATGCGGACGACACCGCCGACGCCGGCTTGCTTGCGCATCACGCTGCCGCCGACGCCGCGCTGCTCGCGCATG CCACAGGCGCTTGCGTTCGCCGGACCATCACCGCTGACGACGTTGGCCTGGCCGACGCCATGCTCCACTGGCAGATCGAC AGCGCGCGCGGCGGCGCCAACATCGACGCCTACGCCGCAACGCTGGGCGGCACCATTGCCCCGTCCGTGCCGCTCGCGCT GTGGCTGACCCGCACGGCCGCGCCGGTGGCCGATGTAGCCGCCGACACCGAAGCCGCAGATCACGTGCTTCCGCCCTATC GCATTCCCAATATCGACATTGGCGCTGCCGGGCCCTATGCAGCCGGCGCGTCGCTCGCGGACGCCCGCGCGCAAGTGTTC GCCCGGGAATCGCATCTCGATGAGATTGCCGCCAGCGCCAGCACCGATCCGGTAGCGCTGCGACTCGGACACCTCGACGA CGCGCGGGGCGCGGCGCTTGTCCGCGAAGTCGCGGATCGCGCGGGATGGGTACCGTCGGCGCCGGGAGCCAGGACATCGC GCGGCGGCAATGTGCGCCGTGGGCGCGGCTTCGCCTATGCGCAAACGGCCGAAAGCGATACTGCGCAAAGCTGGTCTGCC TGGGTTGCGGAAGTCGAGGTCGACGGTAACACTGGCGAACTCGCCGTGACGCGCGTGACCGTGGGACACGACAGTGAAGC AGCCGTGCCCGCACGCTCGACGCCTGTATCGCCGGCGCTGGAAGCCATGGTCGCGCAAACCGCGCGGCAACTGACAGCGC AATCGCCGGACTTCGATGCATGGCCTGCCGAGTTGCCCGAAACATCGGACAGCGCACTGCCGGCCGTGACCGGCATCAAC GTGCCGGAGATCCGCGTGGCCGGGACGCTGGCTATGGGCAACACGTTGGCTGCCGGTCCCGCCGCCACGCTGCCTGCTGC GGCGGCAGTCGCCAACGCCATCTACGATGCCACCGGCGTGCGCCTGCGCGAACCGCCTTTCAGCGCAGACCGGATCCGGC GGGCGCTGGACGCGCAACAACCCGAGAAGCGGCGCAGCAAACGTGGCTGGTTCGCCGCAGCGGCTGCCGCGGCGGCTGGC TTGTGCGCTACGGTACTGCCGTGGCGCGCGCCGATCGCGCCCGTGACGCCACAGGAACCGGGCTTCTACTCTGCCGCCAC ACTGGAACGTGGCCGACTGGTTGCTGCGGCAGGCGATTGCGCGGTTTGCCATACGGCACCAGGCGGCGTCAAAAACGCAG GTGGTCTGGCTCTGGAAACACCGTTCGGCACGGTCTACAGCACCAACATCACGCCCGATGTCGAAACCGGCATCGGCAAC TGGTCGTTCGCGGCATTCGAGCGCGCAATGCGCGAAGGCATACACCGCGATGGCCGCCGCCTGTATCCCGCGTTCCCGTA CACCGCGTTCGCGAAGATCAGCGATGCCGACATGCAGTCGCTGTATGCCTACCTGATGTCGTCCGAGCCGGTGAAGGCCG ACGTGCCGCGCACCGAACTGGCCTTCCCGTTCAATATTCGTCCGCTGCTGGCGGGTTGGAACCTGCTGTTCCATCGCAAC GAGCAGTTTCAACCCGATGCTGCGCGGTCGGCGCAATGGAACCGCGGCGCCTACCTGGCCGAAGGCCTCGGCCATTGCAG CGCGTGCCATTCGCCACGCAACCCGCTTGGCGGTGAAAAAGGCGGCCGACACTATCTGACCGGCGGCACGGCCGAAGGCT GGGAAGCGCCTGCGTTGACCGCGCTGTCGCGCGCGCCGGTGCCGTGGACCGAAGATGCACTGTTCACCTATCTGCGCGGC GGCTACGCCGTGCATCATGGCGCCGCTGCGGGGCCGATGGCACCCGTGGTCGAAGAACTCGCACTGCTGCCCGAATCCGA TGTGCGGGCCATTGCGCACTACGTTGCATCGTTCAGCGCGCCGCCGCCGGCACCCGCCGAGATTACCGCGCAGGCCATGC AATACGAACGGCGCAGCGCAGAGGCAGCCACTACGCTTGGCGGTCCCGCTGCGCGCCTTTACCAGAGCGCCTGCGCGGTG TGCCACCAGTCCGACCAGGGCATGCGGCAGTTTGGCGTGAAGCCTTCGCTGGCACTCAACACGAACCTGCACAGCGACCG GCCCGACAACGTGATCCAGGTGCTGCTGCAAGGCATGCCGGCACCGCCGAACAGCACGCTCGGCGCCATGCCGTCCTACT CGGACAGCCTGGATGACCAGCAAATCGTGGCGCTTACGCAATACCTGCGCGCGCGCTTTGCCCCCGACAAACCCGCGTGG CAGGACGTGGAAGCCACCGTCGCGCGCCTGCGCGCAGCGCCTGCTCACTGA
Upstream 100 bases:
>100_bases TGCGCTTTAACCTGTGCCGCTGCGGCACACACGTGGAAATCGTGCGTGCGGTGCAGCGCGCCGCCGTGCTGCAGCGCGAG CATGCGCAAGGAGCACAACG
Downstream 100 bases:
>100_bases GTTAGCCGAGACCTTCCTGCGCACGTTACGTCGCGCGGGAAAACCCCAAGGAGAAAACCGCACATCGGCCTTGCCGGCCC TTTTCATGTAGCTTACGCTG
Product: cytochrome c, class I
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 976; Mature: 975
Protein sequence:
>976_residues MTDALAPRMTAATPAMTDSRPPFAQCLAAHVLRPPGLRWAGGQPLVARLLEANRDAAAGMPGVRAVVIRNNFAAAVADSA EQAAQGIAALQARWAAPPAAENSPVRRETLAQRGNASAALEQSHARQAQHYQWPLAGMQATTATCTAIADWRDGALRVWL PSTRPGGLRAELAALLGITEQQITLVCWQDADDTADAGLLAHHAAADAALLAHATGACVRRTITADDVGLADAMLHWQID SARGGANIDAYAATLGGTIAPSVPLALWLTRTAAPVADVAADTEAADHVLPPYRIPNIDIGAAGPYAAGASLADARAQVF ARESHLDEIAASASTDPVALRLGHLDDARGAALVREVADRAGWVPSAPGARTSRGGNVRRGRGFAYAQTAESDTAQSWSA WVAEVEVDGNTGELAVTRVTVGHDSEAAVPARSTPVSPALEAMVAQTARQLTAQSPDFDAWPAELPETSDSALPAVTGIN VPEIRVAGTLAMGNTLAAGPAATLPAAAAVANAIYDATGVRLREPPFSADRIRRALDAQQPEKRRSKRGWFAAAAAAAAG LCATVLPWRAPIAPVTPQEPGFYSAATLERGRLVAAAGDCAVCHTAPGGVKNAGGLALETPFGTVYSTNITPDVETGIGN WSFAAFERAMREGIHRDGRRLYPAFPYTAFAKISDADMQSLYAYLMSSEPVKADVPRTELAFPFNIRPLLAGWNLLFHRN EQFQPDAARSAQWNRGAYLAEGLGHCSACHSPRNPLGGEKGGRHYLTGGTAEGWEAPALTALSRAPVPWTEDALFTYLRG GYAVHHGAAAGPMAPVVEELALLPESDVRAIAHYVASFSAPPPAPAEITAQAMQYERRSAEAATTLGGPAARLYQSACAV CHQSDQGMRQFGVKPSLALNTNLHSDRPDNVIQVLLQGMPAPPNSTLGAMPSYSDSLDDQQIVALTQYLRARFAPDKPAW QDVEATVARLRAAPAH
Sequences:
>Translated_976_residues MTDALAPRMTAATPAMTDSRPPFAQCLAAHVLRPPGLRWAGGQPLVARLLEANRDAAAGMPGVRAVVIRNNFAAAVADSA EQAAQGIAALQARWAAPPAAENSPVRRETLAQRGNASAALEQSHARQAQHYQWPLAGMQATTATCTAIADWRDGALRVWL PSTRPGGLRAELAALLGITEQQITLVCWQDADDTADAGLLAHHAAADAALLAHATGACVRRTITADDVGLADAMLHWQID SARGGANIDAYAATLGGTIAPSVPLALWLTRTAAPVADVAADTEAADHVLPPYRIPNIDIGAAGPYAAGASLADARAQVF ARESHLDEIAASASTDPVALRLGHLDDARGAALVREVADRAGWVPSAPGARTSRGGNVRRGRGFAYAQTAESDTAQSWSA WVAEVEVDGNTGELAVTRVTVGHDSEAAVPARSTPVSPALEAMVAQTARQLTAQSPDFDAWPAELPETSDSALPAVTGIN VPEIRVAGTLAMGNTLAAGPAATLPAAAAVANAIYDATGVRLREPPFSADRIRRALDAQQPEKRRSKRGWFAAAAAAAAG LCATVLPWRAPIAPVTPQEPGFYSAATLERGRLVAAAGDCAVCHTAPGGVKNAGGLALETPFGTVYSTNITPDVETGIGN WSFAAFERAMREGIHRDGRRLYPAFPYTAFAKISDADMQSLYAYLMSSEPVKADVPRTELAFPFNIRPLLAGWNLLFHRN EQFQPDAARSAQWNRGAYLAEGLGHCSACHSPRNPLGGEKGGRHYLTGGTAEGWEAPALTALSRAPVPWTEDALFTYLRG GYAVHHGAAAGPMAPVVEELALLPESDVRAIAHYVASFSAPPPAPAEITAQAMQYERRSAEAATTLGGPAARLYQSACAV CHQSDQGMRQFGVKPSLALNTNLHSDRPDNVIQVLLQGMPAPPNSTLGAMPSYSDSLDDQQIVALTQYLRARFAPDKPAW QDVEATVARLRAAPAH >Mature_975_residues TDALAPRMTAATPAMTDSRPPFAQCLAAHVLRPPGLRWAGGQPLVARLLEANRDAAAGMPGVRAVVIRNNFAAAVADSAE QAAQGIAALQARWAAPPAAENSPVRRETLAQRGNASAALEQSHARQAQHYQWPLAGMQATTATCTAIADWRDGALRVWLP STRPGGLRAELAALLGITEQQITLVCWQDADDTADAGLLAHHAAADAALLAHATGACVRRTITADDVGLADAMLHWQIDS ARGGANIDAYAATLGGTIAPSVPLALWLTRTAAPVADVAADTEAADHVLPPYRIPNIDIGAAGPYAAGASLADARAQVFA RESHLDEIAASASTDPVALRLGHLDDARGAALVREVADRAGWVPSAPGARTSRGGNVRRGRGFAYAQTAESDTAQSWSAW VAEVEVDGNTGELAVTRVTVGHDSEAAVPARSTPVSPALEAMVAQTARQLTAQSPDFDAWPAELPETSDSALPAVTGINV PEIRVAGTLAMGNTLAAGPAATLPAAAAVANAIYDATGVRLREPPFSADRIRRALDAQQPEKRRSKRGWFAAAAAAAAGL CATVLPWRAPIAPVTPQEPGFYSAATLERGRLVAAAGDCAVCHTAPGGVKNAGGLALETPFGTVYSTNITPDVETGIGNW SFAAFERAMREGIHRDGRRLYPAFPYTAFAKISDADMQSLYAYLMSSEPVKADVPRTELAFPFNIRPLLAGWNLLFHRNE QFQPDAARSAQWNRGAYLAEGLGHCSACHSPRNPLGGEKGGRHYLTGGTAEGWEAPALTALSRAPVPWTEDALFTYLRGG YAVHHGAAAGPMAPVVEELALLPESDVRAIAHYVASFSAPPPAPAEITAQAMQYERRSAEAATTLGGPAARLYQSACAVC HQSDQGMRQFGVKPSLALNTNLHSDRPDNVIQVLLQGMPAPPNSTLGAMPSYSDSLDDQQIVALTQYLRARFAPDKPAWQ DVEATVARLRAAPAH
Specific function: Dehydration of primary alcohols (exception:methanol) [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Periplasmic side (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 3 cytochrome c domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009056 - InterPro: IPR003088 - InterPro: IPR014353 [H]
Pfam domain/function: PF00034 Cytochrom_C [H]
EC number: NA
Molecular weight: Translated: 102402; Mature: 102270
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: PS51007 CYTC ; PS51008 MULTIHEME_CYTC L=rr
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDALAPRMTAATPAMTDSRPPFAQCLAAHVLRPPGLRWAGGQPLVARLLEANRDAAAGM CCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHCCC PGVRAVVIRNNFAAAVADSAEQAAQGIAALQARWAAPPAAENSPVRRETLAQRGNASAAL CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHH EQSHARQAQHYQWPLAGMQATTATCTAIADWRDGALRVWLPSTRPGGLRAELAALLGITE HHHHHHHHHHCCCCCCCCCHHHHHHEEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCC QQITLVCWQDADDTADAGLLAHHAAADAALLAHATGACVRRTITADDVGLADAMLHWQID CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHEEEEEEE SARGGANIDAYAATLGGTIAPSVPLALWLTRTAAPVADVAADTEAADHVLPPYRIPNIDI CCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHCCCHHHHHCCCCCCCCCCCC GAAGPYAAGASLADARAQVFARESHLDEIAASASTDPVALRLGHLDDARGAALVREVADR CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH AGWVPSAPGARTSRGGNVRRGRGFAYAQTAESDTAQSWSAWVAEVEVDGNTGELAVTRVT CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHEEEEEEEEECCCCCCEEEEEEE VGHDSEAAVPARSTPVSPALEAMVAQTARQLTAQSPDFDAWPAELPETSDSALPAVTGIN ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCC VPEIRVAGTLAMGNTLAAGPAATLPAAAAVANAIYDATGVRLREPPFSADRIRRALDAQQ CCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCC PEKRRSKRGWFAAAAAAAAGLCATVLPWRAPIAPVTPQEPGFYSAATLERGRLVAAAGDC CHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHCCCEEEEECCCE AVCHTAPGGVKNAGGLALETPFGTVYSTNITPDVETGIGNWSFAAFERAMREGIHRDGRR EEEECCCCCCCCCCCEEEECCCCCEEECCCCCCHHCCCCCCHHHHHHHHHHHHHHCCCCE LYPAFPYTAFAKISDADMQSLYAYLMSSEPVKADVPRTELAFPFNIRPLLAGWNLLFHRN ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCHHHHCCEEEEECC EQFQPDAARSAQWNRGAYLAEGLGHCSACHSPRNPLGGEKGGRHYLTGGTAEGWEAPALT CCCCCCHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHH ALSRAPVPWTEDALFTYLRGGYAVHHGAAAGPMAPVVEELALLPESDVRAIAHYVASFSA HHHCCCCCCCHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCC PPPAPAEITAQAMQYERRSAEAATTLGGPAARLYQSACAVCHQSDQGMRQFGVKPSLALN CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEE TNLHSDRPDNVIQVLLQGMPAPPNSTLGAMPSYSDSLDDQQIVALTQYLRARFAPDKPAW CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCH QDVEATVARLRAAPAH HHHHHHHHHHHCCCCC >Mature Secondary Structure TDALAPRMTAATPAMTDSRPPFAQCLAAHVLRPPGLRWAGGQPLVARLLEANRDAAAGM CCCCCCCHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHCCC PGVRAVVIRNNFAAAVADSAEQAAQGIAALQARWAAPPAAENSPVRRETLAQRGNASAAL CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHH EQSHARQAQHYQWPLAGMQATTATCTAIADWRDGALRVWLPSTRPGGLRAELAALLGITE HHHHHHHHHHCCCCCCCCCHHHHHHEEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCC QQITLVCWQDADDTADAGLLAHHAAADAALLAHATGACVRRTITADDVGLADAMLHWQID CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHEEEEEEE SARGGANIDAYAATLGGTIAPSVPLALWLTRTAAPVADVAADTEAADHVLPPYRIPNIDI CCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHCCCHHHHHCCCCCCCCCCCC GAAGPYAAGASLADARAQVFARESHLDEIAASASTDPVALRLGHLDDARGAALVREVADR CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH AGWVPSAPGARTSRGGNVRRGRGFAYAQTAESDTAQSWSAWVAEVEVDGNTGELAVTRVT CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHEEEEEEEEECCCCCCEEEEEEE VGHDSEAAVPARSTPVSPALEAMVAQTARQLTAQSPDFDAWPAELPETSDSALPAVTGIN ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCC VPEIRVAGTLAMGNTLAAGPAATLPAAAAVANAIYDATGVRLREPPFSADRIRRALDAQQ CCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCC PEKRRSKRGWFAAAAAAAAGLCATVLPWRAPIAPVTPQEPGFYSAATLERGRLVAAAGDC CHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHCCCEEEEECCCE AVCHTAPGGVKNAGGLALETPFGTVYSTNITPDVETGIGNWSFAAFERAMREGIHRDGRR EEEECCCCCCCCCCCEEEECCCCCEEECCCCCCHHCCCCCCHHHHHHHHHHHHHHCCCCE LYPAFPYTAFAKISDADMQSLYAYLMSSEPVKADVPRTELAFPFNIRPLLAGWNLLFHRN ECCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCHHHHCCEEEEECC EQFQPDAARSAQWNRGAYLAEGLGHCSACHSPRNPLGGEKGGRHYLTGGTAEGWEAPALT CCCCCCHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHH ALSRAPVPWTEDALFTYLRGGYAVHHGAAAGPMAPVVEELALLPESDVRAIAHYVASFSA HHHCCCCCCCHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCC PPPAPAEITAQAMQYERRSAEAATTLGGPAARLYQSACAVCHQSDQGMRQFGVKPSLALN CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEE TNLHSDRPDNVIQVLLQGMPAPPNSTLGAMPSYSDSLDDQQIVALTQYLRARFAPDKPAW CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCH QDVEATVARLRAAPAH HHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA