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The map label for this gene is ypdB [C]

Identifier: 73541653

GI number: 73541653

Start: 2151275

End: 2152096

Strand: Reverse

Name: ypdB [C]

Synonym: Reut_A1965

Alternate gene names: 73541653

Gene position: 2152096-2151275 (Counterclockwise)

Preceding gene: 73541654

Following gene: 73541652

Centisome position: 56.54

GC content: 65.57

Gene sequence:

>822_bases
ATGACTCCGACCCTGCTGATTGCCGATGATGAACCCCTGCTGGCCCGCGTGCTGGAATCCGAGCTGAGCGCGCTGTGGCC
GGAAGCCAGCGTGGTCAGCGTGGTGCACGATGGCGTCGCTGCGCTGGAAGCCGCACGGCAACAACAGCCGACCGTGGTGT
TCCTCGACATCCGCATGCCCGGTATGAGCGGCATGGACGTGGCCCGCGAACTGGTCGAGTTCGATGACCCGCCGCTTGTG
GTATTCGTGACGGCCTACGACCAGTTCGCGCTGGAGGCGTTCGAACGCGCCGCCGTGGACTACGTGCTCAAGCCCGTGCA
GCACGAGCGGCTGGAGGCAACGGTTTCGCGGCTGAAGGCGCGGCTGGCGGCGGCACAGGCCGATGCGGAGCCGAGCACCG
CCCAAATCGACAACGACCGGCTGGCTCAACTGCTTAACCGGCTGGATGCGCTGGAGAATCCAACAGCCGCCCGTGCCGCG
ACAGGGCAGCAGGGCAGTTACCTGCGCTTCATCAAGGCGCTGGTCGGACAGGAGGTCCGCATCATCCCGGTCGATGAGGT
GATTTACCTGGAAGCGACCGACAAGTACGTCAACGTCGTGTCTACCGGTGGCGAGGCGTTGATCCGCACCAGCCTGCGCG
AACTGGCGCAGCAGTTGGATCCCGAGCGCTTCTGGCAGATCCACCGCGGTACCGTGGTCAATATCACATGCGTCGCCAGC
GCTGTCCCGCAGTCGCTCGGCCGCGTGTCGCTGCGCCTGCGAGATCGGCCGGAATCGCTGCCCGTGGCCCGGCAGTACGC
CTACCTGTTCAAGCAGATGTAG

Upstream 100 bases:

>100_bases
GGTGCCCGCCACGCCTGCCGGTGCTACACCGGCCATGCCTCGCCTCGGATGATCTGAAACGCCCTGCCTGCTGACATCGA
TCACGCCCCTGATCCCTGCC

Downstream 100 bases:

>100_bases
TTGGCTCCGGCGTTGCGGCGGCGGCTGCACCGGGACGCAGTCGCTTGCGGTTTTCCACTATGATGCGAGCTTCGGTGCGC
GTTTTTGCATGCCCTCGCTT

Product: response regulator receiver:LytTr DNA-binding region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MTPTLLIADDEPLLARVLESELSALWPEASVVSVVHDGVAALEAARQQQPTVVFLDIRMPGMSGMDVARELVEFDDPPLV
VFVTAYDQFALEAFERAAVDYVLKPVQHERLEATVSRLKARLAAAQADAEPSTAQIDNDRLAQLLNRLDALENPTAARAA
TGQQGSYLRFIKALVGQEVRIIPVDEVIYLEATDKYVNVVSTGGEALIRTSLRELAQQLDPERFWQIHRGTVVNITCVAS
AVPQSLGRVSLRLRDRPESLPVARQYAYLFKQM

Sequences:

>Translated_273_residues
MTPTLLIADDEPLLARVLESELSALWPEASVVSVVHDGVAALEAARQQQPTVVFLDIRMPGMSGMDVARELVEFDDPPLV
VFVTAYDQFALEAFERAAVDYVLKPVQHERLEATVSRLKARLAAAQADAEPSTAQIDNDRLAQLLNRLDALENPTAARAA
TGQQGSYLRFIKALVGQEVRIIPVDEVIYLEATDKYVNVVSTGGEALIRTSLRELAQQLDPERFWQIHRGTVVNITCVAS
AVPQSLGRVSLRLRDRPESLPVARQYAYLFKQM
>Mature_272_residues
TPTLLIADDEPLLARVLESELSALWPEASVVSVVHDGVAALEAARQQQPTVVFLDIRMPGMSGMDVARELVEFDDPPLVV
FVTAYDQFALEAFERAAVDYVLKPVQHERLEATVSRLKARLAAAQADAEPSTAQIDNDRLAQLLNRLDALENPTAARAAT
GQQGSYLRFIKALVGQEVRIIPVDEVIYLEATDKYVNVVSTGGEALIRTSLRELAQQLDPERFWQIHRGTVVNITCVASA
VPQSLGRVSLRLRDRPESLPVARQYAYLFKQM

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=272, Percent_Identity=25.7352941176471, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87082052, Length=275, Percent_Identity=28.7272727272727, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1788394, Length=145, Percent_Identity=31.0344827586207, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 30205; Mature: 30074

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPTLLIADDEPLLARVLESELSALWPEASVVSVVHDGVAALEAARQQQPTVVFLDIRMP
CCCCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
GMSGMDVARELVEFDDPPLVVFVTAYDQFALEAFERAAVDYVLKPVQHERLEATVSRLKA
CCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLAAAQADAEPSTAQIDNDRLAQLLNRLDALENPTAARAATGQQGSYLRFIKALVGQEVR
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHCCCEE
IIPVDEVIYLEATDKYVNVVSTGGEALIRTSLRELAQQLDPERFWQIHRGTVVNITCVAS
EEECCCEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEEHHHH
AVPQSLGRVSLRLRDRPESLPVARQYAYLFKQM
HHHHHHHHEEEEECCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
TPTLLIADDEPLLARVLESELSALWPEASVVSVVHDGVAALEAARQQQPTVVFLDIRMP
CCCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
GMSGMDVARELVEFDDPPLVVFVTAYDQFALEAFERAAVDYVLKPVQHERLEATVSRLKA
CCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLAAAQADAEPSTAQIDNDRLAQLLNRLDALENPTAARAATGQQGSYLRFIKALVGQEVR
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHCCCEE
IIPVDEVIYLEATDKYVNVVSTGGEALIRTSLRELAQQLDPERFWQIHRGTVVNITCVAS
EEECCCEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEEHHHH
AVPQSLGRVSLRLRDRPESLPVARQYAYLFKQM
HHHHHHHHEEEEECCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]