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The map label for this gene is rbsC [H]

Identifier: 73541342

GI number: 73541342

Start: 1780678

End: 1781700

Strand: Reverse

Name: rbsC [H]

Synonym: Reut_A1652

Alternate gene names: 73541342

Gene position: 1781700-1780678 (Counterclockwise)

Preceding gene: 73541343

Following gene: 73541341

Centisome position: 46.81

GC content: 67.35

Gene sequence:

>1023_bases
ATGCGCAATTCCATTCATCCCACGGCGCACGCCGTTGCTTCACAAGGCGCGGCGCGCACGCTTGGTCGCCCCGGCGGCGC
CACCACGCAGGAACGCCTTCGAGCCCTCGGCATGCTGCCGGTGCTGGTGCTGCTGTGCGCCGGCTTCACGGTGCTGACCG
ACAACTTCGCCAGCCTGCAAAACCTGTCGATCATCGCGCAGCAGGCGTCGATCAACCTGGTGCTGGCGGCCGGCATGACC
TTCGTCATCCTGACGGGCGGGATCGACCTGTCGGTCGGTTCCATCCTGTCGATCTCGGCGGTGGCGGCGATGCTGACGTC
GCTGACGCCGGAACTGAGTGCGCTCAGCGTGCCCGCCGCGCTGCTGTGCGGCCTGCTGTTCGGGCTGGTGAACGGCGCGC
TGATTGCCTTCATGAAGCTGCCGCCGTTCATCGTCACGCTCGGAAGCCTGACCGCAGTGCGCGGGCTGGCGCGGCTGGTC
GGGCATGACAGCACGCTCTACAACCCGGACATCGGTTTTGCCTTCATCGGCAATGGCGACGTGCTGGGCGTGCCGTGGCT
CGTGATCATCGCGGGTGCCGTGATCGCGGTGTCCTGGGTCGTGCTGCGCCGGACCGTACTGGGGCTGCAGATCTACGCCG
TGGGCGGCAACGCCGAGGCGGCGCGGCTGTCGGGCATCAAGGTGTGGGTGGTGCTGCTGTTCGTCTATGCCGTGTCTGGC
CTGCTGGCGGGGCTGGGCGGCGTGATGTCCGCCTCGCGCCTGTACGCGGCCAACGGCCTGCAGTTGGGCCAGTCTTATGA
GCTCGATGCGATCGCCGCGGTGATCCTCGGTGGCACGAGCTTCGTGGGCGGCGTCGGCTCCATCGGCGGCACGCTGATCG
GCGCGCTGATCATTGCCGCGCTTTCCAATGGGCTGGTGCTGCTGGGTGTGTCGGACATCTGGCAATACATCATCAAGGGT
CTGGTCATCATCGGCGCGGTGGCGCTGGACCGCTATCGCCAGAAGGGCTCGGCCCGGACCTGA

Upstream 100 bases:

>100_bases
GATGAGCCGGCACAGGCCACCGTACTGCACTGAACCGACGTTCCCCGAGACCGCGCAGACGGTCGACGGCAAGCGCCGTC
CCACAGACTCAGGAGACACC

Downstream 100 bases:

>100_bases
ACCCGCACAGGAGACGCAAGTGATCAAGCAATTCCTGATGACAGTCGCGCTGGGCGCATGCTGCATGACCGGGGCCATGG
CGCAGGCGCCGGCCAAAGAC

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MRNSIHPTAHAVASQGAARTLGRPGGATTQERLRALGMLPVLVLLCAGFTVLTDNFASLQNLSIIAQQASINLVLAAGMT
FVILTGGIDLSVGSILSISAVAAMLTSLTPELSALSVPAALLCGLLFGLVNGALIAFMKLPPFIVTLGSLTAVRGLARLV
GHDSTLYNPDIGFAFIGNGDVLGVPWLVIIAGAVIAVSWVVLRRTVLGLQIYAVGGNAEAARLSGIKVWVVLLFVYAVSG
LLAGLGGVMSASRLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIGGTLIGALIIAALSNGLVLLGVSDIWQYIIKG
LVIIGAVALDRYRQKGSART

Sequences:

>Translated_340_residues
MRNSIHPTAHAVASQGAARTLGRPGGATTQERLRALGMLPVLVLLCAGFTVLTDNFASLQNLSIIAQQASINLVLAAGMT
FVILTGGIDLSVGSILSISAVAAMLTSLTPELSALSVPAALLCGLLFGLVNGALIAFMKLPPFIVTLGSLTAVRGLARLV
GHDSTLYNPDIGFAFIGNGDVLGVPWLVIIAGAVIAVSWVVLRRTVLGLQIYAVGGNAEAARLSGIKVWVVLLFVYAVSG
LLAGLGGVMSASRLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIGGTLIGALIIAALSNGLVLLGVSDIWQYIIKG
LVIIGAVALDRYRQKGSART
>Mature_340_residues
MRNSIHPTAHAVASQGAARTLGRPGGATTQERLRALGMLPVLVLLCAGFTVLTDNFASLQNLSIIAQQASINLVLAAGMT
FVILTGGIDLSVGSILSISAVAAMLTSLTPELSALSVPAALLCGLLFGLVNGALIAFMKLPPFIVTLGSLTAVRGLARLV
GHDSTLYNPDIGFAFIGNGDVLGVPWLVIIAGAVIAVSWVVLRRTVLGLQIYAVGGNAEAARLSGIKVWVVLLFVYAVSG
LLAGLGGVMSASRLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIGGTLIGALIIAALSNGLVLLGVSDIWQYIIKG
LVIIGAVALDRYRQKGSART

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4158

COG function: function code R; Predicted ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=312, Percent_Identity=43.5897435897436, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1790524, Length=303, Percent_Identity=38.2838283828383, Blast_Score=161, Evalue=5e-41,
Organism=Escherichia coli, GI145693152, Length=324, Percent_Identity=34.5679012345679, Blast_Score=147, Evalue=8e-37,
Organism=Escherichia coli, GI1788471, Length=325, Percent_Identity=38.4615384615385, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI1788896, Length=337, Percent_Identity=32.9376854599407, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI145693214, Length=255, Percent_Identity=38.8235294117647, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI87082395, Length=288, Percent_Identity=35.0694444444444, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1789992, Length=368, Percent_Identity=30.7065217391304, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787793, Length=288, Percent_Identity=34.0277777777778, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787794, Length=276, Percent_Identity=34.0579710144928, Blast_Score=89, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34682; Mature: 34682

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNSIHPTAHAVASQGAARTLGRPGGATTQERLRALGMLPVLVLLCAGFTVLTDNFASLQ
CCCCCCCHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHH
NLSIIAQQASINLVLAAGMTFVILTGGIDLSVGSILSISAVAAMLTSLTPELSALSVPAA
HHHHHHHHHCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCHH
LLCGLLFGLVNGALIAFMKLPPFIVTLGSLTAVRGLARLVGHDSTLYNPDIGFAFIGNGD
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEECCCC
VLGVPWLVIIAGAVIAVSWVVLRRTVLGLQIYAVGGNAEAARLSGIKVWVVLLFVYAVSG
CCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
LLAGLGGVMSASRLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIGGTLIGALIIAA
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHH
LSNGLVLLGVSDIWQYIIKGLVIIGAVALDRYRQKGSART
HHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRNSIHPTAHAVASQGAARTLGRPGGATTQERLRALGMLPVLVLLCAGFTVLTDNFASLQ
CCCCCCCHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHH
NLSIIAQQASINLVLAAGMTFVILTGGIDLSVGSILSISAVAAMLTSLTPELSALSVPAA
HHHHHHHHHCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCHH
LLCGLLFGLVNGALIAFMKLPPFIVTLGSLTAVRGLARLVGHDSTLYNPDIGFAFIGNGD
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEECCCC
VLGVPWLVIIAGAVIAVSWVVLRRTVLGLQIYAVGGNAEAARLSGIKVWVVLLFVYAVSG
CCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
LLAGLGGVMSASRLYAANGLQLGQSYELDAIAAVILGGTSFVGGVGSIGGTLIGALIIAA
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHH
LSNGLVLLGVSDIWQYIIKGLVIIGAVALDRYRQKGSART
HHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]