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The map label for this gene is ydfD [H]

Identifier: 73539953

GI number: 73539953

Start: 272080

End: 273528

Strand: Reverse

Name: ydfD [H]

Synonym: Reut_A0247

Alternate gene names: 73539953

Gene position: 273528-272080 (Counterclockwise)

Preceding gene: 73539957

Following gene: 73539952

Centisome position: 7.19

GC content: 67.98

Gene sequence:

>1449_bases
ATGCTGACCCTGGACCTCACCCGCAGCCGCCGTGGCGGCGAGACCCTCACCGAACAGATCGTGGCGGGAATTGCCGCGCT
GGTGGACCGCCGCGCACTGCGTGCGGGCTCTGCGCTGCCCTCGGTACGCCGCTTTGCGCAGCAGCATGGCATCAGCACTT
TTACAGTCGCGGAAGCCTACGGTCGCCTCACGGCGCTCGGCTATCTCGCTGCCCGCCCGGGCTCCGGCTACACCGTCGCG
CATCGCCATGCGCCCGCCGGCGGCATGCGGTCGCCGCAGTGGGAGGCGCCCGGTCTGAATGCGGCGTGGCTGCTGTCGGA
TGTATTCGCCGATCATTCGGTGCCGATCAAGGCCGGCGCCGGCTGGCTGCCGGGCGACTGGCTCAATGAGGAAGGCCTGC
ACCAGGCCATGCGCGCGGCGGCGCGGGTGCCGGCCGCGCAGGTATCGGGCTATGGCCATCCCTACGGCTACGCGCCGCTG
CGCGAGCATATCGCCACGGGCCTGGGCCAGTACGGCATTCCTGCGCAGGCACAACAGGTCGTGCTGACGCAGGGTGCCAC
GCAGGCGCTGGATCTTGTGGTGCGCACGCTGCTGCGCGCCGGCGATACGGTGCTGGTCGAGGCGCCGTGCTACTGCAACC
TGCTGCAGATCCTGCGACTTGCCGGGCTACGCGTGATTGGCGTGCCACGCACTGCGGCCGGGCTCGATACCGATGCACTC
GAAGACGCCATCCGCACGCACGCACCGCGCGCACTCTTCATCAACACCGTGCTGCAGAACCCCACTGGCGCGACCCTGAC
CAGCATGAATGCGTTCCGCGTGCTGCAGCTTGCCGAGCAGCACCGGCTGCTCGTCGTGGAAGACGACATCTACCGCGAAC
TTGCGCCGGCCGGCTCACCGATGCTGGCCGCGATGGACGGGCTGTCGCAGGTGGTCTACATCAACGGGTTTTCCAAGACG
ATCACGCCGTCGCTGCGCGTGGGTTACGTCGCCGCCAGCGCGGACCTGGCCAAGGCGTTTGCGCGGACCAAGATGGCGGT
CGGGCTGACATCTTCGGAAGTCACGGAGCGGCTTGTGTACTCGGTGCTCACGAGCGGCCACTACGGGCGGCACGTGGCAG
CGCTGGCCGAGCGCCTGCGCGCGCAGCAGGACTGCGTGACGGAGAAGATGGAAGCGCACGGCCTGGAAGTGCTGCTGCGG
CCGGAAGGCGGAATGTTCGCGTGGGCACGTGTGCGCGATGTCCTGCATGACGGCGCGCCCATGACCGGCAACCGGCTGGC
TACGCTGGCGCTGGAACGTGGCATCTGGCTGGCGCCAGGTTCTTATTTCGAGCCGGAGGAGACGGATTCGCCGTGGATAC
GTTTCAACGTGGCGACCGGAGACGCGCCACAGTTATGGGAATTCTTTGACAGCCTGGCGAATGGGCAGCGCGCGGTACGT
GCTGCGTGA

Upstream 100 bases:

>100_bases
CATTGCACCGCGTCATTTGCAGCGACCGCGCAGACGCACAGGCCAGCCGGGCTCGTGCAGCCGCTAAACTGTACAGGTTA
GAACTTGCCTGAAGTGCCCC

Downstream 100 bases:

>100_bases
GGTCCGCGAACCGGCCGCTGCGGGAGATCAGCCCCAGAGGCGCTCGACCACCCAACCCGCTGTGGCGCAGACGCCAATCC
AGACGGTCATGCAAGTAGCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 482; Mature: 482

Protein sequence:

>482_residues
MLTLDLTRSRRGGETLTEQIVAGIAALVDRRALRAGSALPSVRRFAQQHGISTFTVAEAYGRLTALGYLAARPGSGYTVA
HRHAPAGGMRSPQWEAPGLNAAWLLSDVFADHSVPIKAGAGWLPGDWLNEEGLHQAMRAAARVPAAQVSGYGHPYGYAPL
REHIATGLGQYGIPAQAQQVVLTQGATQALDLVVRTLLRAGDTVLVEAPCYCNLLQILRLAGLRVIGVPRTAAGLDTDAL
EDAIRTHAPRALFINTVLQNPTGATLTSMNAFRVLQLAEQHRLLVVEDDIYRELAPAGSPMLAAMDGLSQVVYINGFSKT
ITPSLRVGYVAASADLAKAFARTKMAVGLTSSEVTERLVYSVLTSGHYGRHVAALAERLRAQQDCVTEKMEAHGLEVLLR
PEGGMFAWARVRDVLHDGAPMTGNRLATLALERGIWLAPGSYFEPEETDSPWIRFNVATGDAPQLWEFFDSLANGQRAVR
AA

Sequences:

>Translated_482_residues
MLTLDLTRSRRGGETLTEQIVAGIAALVDRRALRAGSALPSVRRFAQQHGISTFTVAEAYGRLTALGYLAARPGSGYTVA
HRHAPAGGMRSPQWEAPGLNAAWLLSDVFADHSVPIKAGAGWLPGDWLNEEGLHQAMRAAARVPAAQVSGYGHPYGYAPL
REHIATGLGQYGIPAQAQQVVLTQGATQALDLVVRTLLRAGDTVLVEAPCYCNLLQILRLAGLRVIGVPRTAAGLDTDAL
EDAIRTHAPRALFINTVLQNPTGATLTSMNAFRVLQLAEQHRLLVVEDDIYRELAPAGSPMLAAMDGLSQVVYINGFSKT
ITPSLRVGYVAASADLAKAFARTKMAVGLTSSEVTERLVYSVLTSGHYGRHVAALAERLRAQQDCVTEKMEAHGLEVLLR
PEGGMFAWARVRDVLHDGAPMTGNRLATLALERGIWLAPGSYFEPEETDSPWIRFNVATGDAPQLWEFFDSLANGQRAVR
AA
>Mature_482_residues
MLTLDLTRSRRGGETLTEQIVAGIAALVDRRALRAGSALPSVRRFAQQHGISTFTVAEAYGRLTALGYLAARPGSGYTVA
HRHAPAGGMRSPQWEAPGLNAAWLLSDVFADHSVPIKAGAGWLPGDWLNEEGLHQAMRAAARVPAAQVSGYGHPYGYAPL
REHIATGLGQYGIPAQAQQVVLTQGATQALDLVVRTLLRAGDTVLVEAPCYCNLLQILRLAGLRVIGVPRTAAGLDTDAL
EDAIRTHAPRALFINTVLQNPTGATLTSMNAFRVLQLAEQHRLLVVEDDIYRELAPAGSPMLAAMDGLSQVVYINGFSKT
ITPSLRVGYVAASADLAKAFARTKMAVGLTSSEVTERLVYSVLTSGHYGRHVAALAERLRAQQDCVTEKMEAHGLEVLLR
PEGGMFAWARVRDVLHDGAPMTGNRLATLALERGIWLAPGSYFEPEETDSPWIRFNVATGDAPQLWEFFDSLANGQRAVR
AA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=320, Percent_Identity=25.625, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI33469970, Length=320, Percent_Identity=25.625, Blast_Score=101, Evalue=2e-21,
Organism=Escherichia coli, GI1787710, Length=470, Percent_Identity=28.936170212766, Blast_Score=152, Evalue=6e-38,
Organism=Escherichia coli, GI1790797, Length=416, Percent_Identity=29.0865384615385, Blast_Score=145, Evalue=4e-36,
Organism=Saccharomyces cerevisiae, GI6321236, Length=376, Percent_Identity=21.8085106382979, Blast_Score=77, Evalue=6e-15,
Organism=Saccharomyces cerevisiae, GI6321929, Length=277, Percent_Identity=21.2996389891697, Blast_Score=70, Evalue=7e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 51837; Mature: 51837

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTLDLTRSRRGGETLTEQIVAGIAALVDRRALRAGSALPSVRRFAQQHGISTFTVAEAY
CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEHHHHHH
GRLTALGYLAARPGSGYTVAHRHAPAGGMRSPQWEAPGLNAAWLLSDVFADHSVPIKAGA
HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEECCC
GWLPGDWLNEEGLHQAMRAAARVPAAQVSGYGHPYGYAPLREHIATGLGQYGIPAQAQQV
CCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHE
VLTQGATQALDLVVRTLLRAGDTVLVEAPCYCNLLQILRLAGLRVIGVPRTAAGLDTDAL
EECCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCEEEECCCHHCCCCHHHH
EDAIRTHAPRALFINTVLQNPTGATLTSMNAFRVLQLAEQHRLLVVEDDIYRELAPAGSP
HHHHHHCCCHHEEHHHHHCCCCCCEEHHHHHHHHHHHHHHCCEEEEECHHHHHHCCCCCC
MLAAMDGLSQVVYINGFSKTITPSLRVGYVAASADLAKAFARTKMAVGLTSSEVTERLVY
HHHHHHCCCEEEEEECCCHHCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
SVLTSGHYGRHVAALAERLRAQQDCVTEKMEAHGLEVLLRPEGGMFAWARVRDVLHDGAP
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEHHHHHHHHHHCCCC
MTGNRLATLALERGIWLAPGSYFEPEETDSPWIRFNVATGDAPQLWEFFDSLANGQRAVR
CCCCHHEEEEHHCCEEECCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCHHHC
AA
CC
>Mature Secondary Structure
MLTLDLTRSRRGGETLTEQIVAGIAALVDRRALRAGSALPSVRRFAQQHGISTFTVAEAY
CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEHHHHHH
GRLTALGYLAARPGSGYTVAHRHAPAGGMRSPQWEAPGLNAAWLLSDVFADHSVPIKAGA
HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEECCC
GWLPGDWLNEEGLHQAMRAAARVPAAQVSGYGHPYGYAPLREHIATGLGQYGIPAQAQQV
CCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHE
VLTQGATQALDLVVRTLLRAGDTVLVEAPCYCNLLQILRLAGLRVIGVPRTAAGLDTDAL
EECCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCEEEECCCHHCCCCHHHH
EDAIRTHAPRALFINTVLQNPTGATLTSMNAFRVLQLAEQHRLLVVEDDIYRELAPAGSP
HHHHHHCCCHHEEHHHHHCCCCCCEEHHHHHHHHHHHHHHCCEEEEECHHHHHHCCCCCC
MLAAMDGLSQVVYINGFSKTITPSLRVGYVAASADLAKAFARTKMAVGLTSSEVTERLVY
HHHHHHCCCEEEEEECCCHHCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
SVLTSGHYGRHVAALAERLRAQQDCVTEKMEAHGLEVLLRPEGGMFAWARVRDVLHDGAP
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEHHHHHHHHHHCCCC
MTGNRLATLALERGIWLAPGSYFEPEETDSPWIRFNVATGDAPQLWEFFDSLANGQRAVR
CCCCHHEEEEHHCCEEECCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCHHHC
AA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]