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The map label for this gene is sdsB [H]

Identifier: 73539947

GI number: 73539947

Start: 265966

End: 266913

Strand: Reverse

Name: sdsB [H]

Synonym: Reut_A0241

Alternate gene names: 73539947

Gene position: 266913-265966 (Counterclockwise)

Preceding gene: 73539952

Following gene: 73539946

Centisome position: 7.01

GC content: 68.99

Gene sequence:

>948_bases
ATGAGCCTGCGTCAGCTCCATCACTTCGTCACGCTGATCGAGCAAGGCAGCTTCGCCCGCGCCGCCGATGCGCTGCACCT
GTCGCAGCCCGCGCTCACACGCAGCATCCAGACGCTCGAGGGCGACCTGGGCACGCTGGTGGACCGCGCATATGGCAAGG
CCAGACCGACCGCTGCCGGCGCCATCGTCCTCGAGCGCGCACGGCGCATGCTGCGCGAAGGCCGCGAACTCAGGCGCGAC
CTGCAGATGCTGCAGGACATCGAGATCGGAGAGATCCGCATCGGCTTCGGGCCATTCGCATCAGCGTTCCTTCTTGAGCC
GGTGCTGGCCGCGCTGGTGGCGCGCCATCCGACGTTGCGCATCGACCTGGAGACAGCGGACACGCGCACCATGCTGACGT
CGCTGGAGGCGGAACGGCTCGATGCCTTTGTCGGCGAGAGCCAGAGCCTGACCCGACTGCCACACCTGCAGATTGAACGG
CTGCCGGCGCTGCAGACTGCATTCTTCGTGCGCAGCAGCCACCCGCTGGCCAAACGCCGCGCGATCAACCTGGCGGCACT
GACGCCCTACCCCGTGGCCGGTCCGCGACTGCCCGCCGGCGTACGTGACTTCTTCCACCGCCGGGTCGCGGAGGATCAGG
GCAACATTGATGGCACGCCGTGCGAACTTCTGACGGTCACGTGCGACGACATGCACGCGCTGCGCACGCTGATGCTGTCG
ACCGATGCGGTGGTGCTGGTGCCGCGCGCGATGATGGCGAGCCTGCAGGCCGACGGACAAGCCGTGGCGCTGCCGCTGCG
TCCCGCCACGGAACTGCGTGCGCCGTATGGCGTGGTGTCGCTGGCCGGGCACTCCCTGTCCCCCGCAGCGCGGGCGTTCG
TGACGCTGGTGCACGAGGTGCTGGCCGAGCACCCGGCCTTGCGCAAGGGCGCACGTCAGGCGCACTAG

Upstream 100 bases:

>100_bases
GCTTGAGCTTGATGTTTTTGGTTTGCAGACAAGCTAACCGGCTTGAGAAAATACGTCCAATGCAATATTTTTCAAATTTC
CATGCATAAAAACTGAATTC

Downstream 100 bases:

>100_bases
TGAGCGTATGCTGTGCGCTTCGGTTTCCCGAAGAAGAAAGGAGACACGGCAATGTCCAGACTCAGAGTGAACAGCTTTAC
GTTGTCGCTTGACGGCTATG

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MSLRQLHHFVTLIEQGSFARAADALHLSQPALTRSIQTLEGDLGTLVDRAYGKARPTAAGAIVLERARRMLREGRELRRD
LQMLQDIEIGEIRIGFGPFASAFLLEPVLAALVARHPTLRIDLETADTRTMLTSLEAERLDAFVGESQSLTRLPHLQIER
LPALQTAFFVRSSHPLAKRRAINLAALTPYPVAGPRLPAGVRDFFHRRVAEDQGNIDGTPCELLTVTCDDMHALRTLMLS
TDAVVLVPRAMMASLQADGQAVALPLRPATELRAPYGVVSLAGHSLSPAARAFVTLVHEVLAEHPALRKGARQAH

Sequences:

>Translated_315_residues
MSLRQLHHFVTLIEQGSFARAADALHLSQPALTRSIQTLEGDLGTLVDRAYGKARPTAAGAIVLERARRMLREGRELRRD
LQMLQDIEIGEIRIGFGPFASAFLLEPVLAALVARHPTLRIDLETADTRTMLTSLEAERLDAFVGESQSLTRLPHLQIER
LPALQTAFFVRSSHPLAKRRAINLAALTPYPVAGPRLPAGVRDFFHRRVAEDQGNIDGTPCELLTVTCDDMHALRTLMLS
TDAVVLVPRAMMASLQADGQAVALPLRPATELRAPYGVVSLAGHSLSPAARAFVTLVHEVLAEHPALRKGARQAH
>Mature_314_residues
SLRQLHHFVTLIEQGSFARAADALHLSQPALTRSIQTLEGDLGTLVDRAYGKARPTAAGAIVLERARRMLREGRELRRDL
QMLQDIEIGEIRIGFGPFASAFLLEPVLAALVARHPTLRIDLETADTRTMLTSLEAERLDAFVGESQSLTRLPHLQIERL
PALQTAFFVRSSHPLAKRRAINLAALTPYPVAGPRLPAGVRDFFHRRVAEDQGNIDGTPCELLTVTCDDMHALRTLMLST
DAVVLVPRAMMASLQADGQAVALPLRPATELRAPYGVVSLAGHSLSPAARAFVTLVHEVLAEHPALRKGARQAH

Specific function: Activates the transcription of the sdsA gene for sodium dodecyl sulfate (SDS) degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=185, Percent_Identity=32.972972972973, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1790399, Length=192, Percent_Identity=32.2916666666667, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787601, Length=299, Percent_Identity=26.0869565217391, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI145693105, Length=219, Percent_Identity=25.1141552511416, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788297, Length=146, Percent_Identity=32.8767123287671, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87081904, Length=307, Percent_Identity=25.4071661237785, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788887, Length=310, Percent_Identity=28.0645161290323, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787879, Length=210, Percent_Identity=30, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI87082024, Length=170, Percent_Identity=30.5882352941176, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34456; Mature: 34325

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLRQLHHFVTLIEQGSFARAADALHLSQPALTRSIQTLEGDLGTLVDRAYGKARPTAAG
CCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
AIVLERARRMLREGRELRRDLQMLQDIEIGEIRIGFGPFASAFLLEPVLAALVARHPTLR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEE
IDLETADTRTMLTSLEAERLDAFVGESQSLTRLPHLQIERLPALQTAFFVRSSHPLAKRR
EEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHCCHHHHHHHHHCCCCHHHHH
AINLAALTPYPVAGPRLPAGVRDFFHRRVAEDQGNIDGTPCELLTVTCDDMHALRTLMLS
HCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHHHC
TDAVVLVPRAMMASLQADGQAVALPLRPATELRAPYGVVSLAGHSLSPAARAFVTLVHEV
CCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHH
LAEHPALRKGARQAH
HHHCHHHHHHCCCCC
>Mature Secondary Structure 
SLRQLHHFVTLIEQGSFARAADALHLSQPALTRSIQTLEGDLGTLVDRAYGKARPTAAG
CHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
AIVLERARRMLREGRELRRDLQMLQDIEIGEIRIGFGPFASAFLLEPVLAALVARHPTLR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEE
IDLETADTRTMLTSLEAERLDAFVGESQSLTRLPHLQIERLPALQTAFFVRSSHPLAKRR
EEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHCCHHHHHHHHHCCCCHHHHH
AINLAALTPYPVAGPRLPAGVRDFFHRRVAEDQGNIDGTPCELLTVTCDDMHALRTLMLS
HCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHHHC
TDAVVLVPRAMMASLQADGQAVALPLRPATELRAPYGVVSLAGHSLSPAARAFVTLVHEV
CCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHH
LAEHPALRKGARQAH
HHHCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1587481 [H]