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The map label for this gene is yciR [C]

Identifier: 73539420

GI number: 73539420

Start: 2416153

End: 2418135

Strand: Direct

Name: yciR [C]

Synonym: Reut_B5598

Alternate gene names: 73539420

Gene position: 2416153-2418135 (Clockwise)

Preceding gene: 73539419

Following gene: 73539421

Centisome position: 88.63

GC content: 69.34

Gene sequence:

>1983_bases
ATGATCGCCTTGAGTACCGCCCTTTTGCTGCTGGCCGCCCTGCTCGGCGTGGCCGCCGTTCTCGGCGGTCGCCAGGCACG
GCCGGAGGTGGGGGCTCGCCGTCCATTGCGCGCGTTGACGTGGTCCGCCGCGCTGCTGTCGCAACTGACGGTCGGATTGC
CGTTCGTGGTGGTGATCAGCTCCGGCGCGGTGCCTGCGGCCAATGAAACCGCACAGATCGCTGCGGCCTTTGCCGTTGCC
GCGGCGGCCACCTCGGCGGGCAAGTTGCTGTTTGCGTGGCTCAGGCAGGGCGCGCGGCTTTGGCGCGGCGCGGCGATTGC
CTCGGCACTGGCCGGCGCCGGGCTGGTGGCGGTCGCGGGTACCCGGCTTGGCCGGGTCTGTGGCGCAGGCTCCATGACCG
CACGCGCGTGCATCGACGCGGCGGGATTGCCGCATCCGGCTTGGCTGGCGGGTGGGCTGACCGCGCTGTGCCTGCTGATG
TTGCTCGTCCACAAGGCGCAGTCCCGCGGCTGGGTGCCTGCTCCCAGGCGCAATGCGGCTGGCGCTACCGACGAACTGTC
TGACGAAGCGGCCGGCGCCTTGCGCGTGGTGGAGTCGCGGCAGATCCGGCGTAGCGGACGGATTCCCGGGCGTCTGGTCG
TGCGGCCTGGCGCGCGGGGCCAGGGCACAGTGGCCGAGTACAGCGTGGCTACCGCTATGCCGGACCGCGTCGCATTCGGG
CGCTGGCTCGACCAGGCGATCGCCCAGGCGCGGCTGGCCGAAAGCAGCTGCGCCGTCCTGCTCATCCATGTCGCGGATTT
CCGCGAAGTCGACGAAGTCTTTGAAGTGCGCGCGGACGACATCCTCGCGCAGGATGCCGGCGCGCTGGCGCAGGCCGCGC
TGGAACCCCACGATTTCCTGGCCCGGCTCGCGCGCGACGAATTTGCGGTCGGGGTGCCCGAAATGGTCCACCATGGCCGT
GCGCAGGAACTGGGCTCGCGCGTGCTAGGCTCGCTGGCCGAGTTCGTGGCGTCGCGCGGCCTGCAGATGCAGATCGGCGT
GAACATCGGCATTGCCATCTATCCGCGCGATGCACAGACGTCCGAGTCGCTGATGCAGGCCGCCCGCGTGAGCCTGACCG
AGGCGCGCGAAAGCGGCTCCAACCAGGTGCGCCTGTTCAACAGTGCGGCCGGCGAGCGCGCGCGCCGCACGCGCGTGATC
CGGCGCGACCTGTGGACGGCGATTCAGGACGATGCGCTGTCGCTGCAGTTCCAGCCGAAGTTCGACGCGCGGCGGCGCAC
CGTGGTCGGCGCCGAGGCGCTTTGCCGCTGGCGCCACCCGGCGCTTGGCCAGGTCAGCCCGGCCGAGTTCATTGCCGTGG
CCGAGCAGTCCAGCCAGATCGATAAGCTTGACGACTGGGTCATTGCCAGCGTATGCCGGCACGTGCGCCAGTGGCAGGAC
GCCGGTTTGCCGCTAGTGCCGGTGGCCATCAACGTATCGGGCCTGCGCTTCGCCAGCCGCAATTTCCCGCAATACCTGCT
CGAGCAGATCCACCAGCACGACATTCCGCCGTCGGCCATCACGCTCGAAATCACCGAGACGGCGGCCATGAAGGACATCG
CCAAGTCGCTCGAAACGCTGGCCGAACTGCAATCGCTCGGCATCCAGGTGGCGCTGGACGACTTCGGCAGCGGCTATTCG
AGCCTCGGCTACCTGAAGCGACTGCGCGTCGGCACGCTGAAGATTGACCGGACGCTCATCGGTGGCCTCGATGCCGATGC
GCAGGGCCGGGCCATTGTCGGCTCCATGGTGGCGCTCGCGCACGAGCTGCGCATGAAGGTGGTGGCCGAAGGCGTGGAAT
CGACGTCGCAACTCGAGATCCTGAACGAGATGGGCTGCGACGAGGTGCAGGGCTACCTGCTGTCGCTGCCGCTGGACGCC
GCGGGATTTGCCGAGGCGCTCGAGCAGAAGGCCGCCGCCCGCGAAGTCCAGGCGGTGCGCTGA

Upstream 100 bases:

>100_bases
GTATTGCCTTGTTCACAGAGCGACCGCAAAGTGCCATGATTCGGGGTTTGCCTCGGATTGCCCGACTGTTCGCGCATTCT
TCTAATTTCCGCGCAATCGA

Downstream 100 bases:

>100_bases
CGCGCAGCGCATCAGGGGCGTGCGACGGCCACAACACGCTCCGCGTATTCCCTGATTCCCTCAAGCTGCTGCACAAGCCT
GCCGATATCCAATGCGGCAG

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 660; Mature: 660

Protein sequence:

>660_residues
MIALSTALLLLAALLGVAAVLGGRQARPEVGARRPLRALTWSAALLSQLTVGLPFVVVISSGAVPAANETAQIAAAFAVA
AAATSAGKLLFAWLRQGARLWRGAAIASALAGAGLVAVAGTRLGRVCGAGSMTARACIDAAGLPHPAWLAGGLTALCLLM
LLVHKAQSRGWVPAPRRNAAGATDELSDEAAGALRVVESRQIRRSGRIPGRLVVRPGARGQGTVAEYSVATAMPDRVAFG
RWLDQAIAQARLAESSCAVLLIHVADFREVDEVFEVRADDILAQDAGALAQAALEPHDFLARLARDEFAVGVPEMVHHGR
AQELGSRVLGSLAEFVASRGLQMQIGVNIGIAIYPRDAQTSESLMQAARVSLTEARESGSNQVRLFNSAAGERARRTRVI
RRDLWTAIQDDALSLQFQPKFDARRRTVVGAEALCRWRHPALGQVSPAEFIAVAEQSSQIDKLDDWVIASVCRHVRQWQD
AGLPLVPVAINVSGLRFASRNFPQYLLEQIHQHDIPPSAITLEITETAAMKDIAKSLETLAELQSLGIQVALDDFGSGYS
SLGYLKRLRVGTLKIDRTLIGGLDADAQGRAIVGSMVALAHELRMKVVAEGVESTSQLEILNEMGCDEVQGYLLSLPLDA
AGFAEALEQKAAAREVQAVR

Sequences:

>Translated_660_residues
MIALSTALLLLAALLGVAAVLGGRQARPEVGARRPLRALTWSAALLSQLTVGLPFVVVISSGAVPAANETAQIAAAFAVA
AAATSAGKLLFAWLRQGARLWRGAAIASALAGAGLVAVAGTRLGRVCGAGSMTARACIDAAGLPHPAWLAGGLTALCLLM
LLVHKAQSRGWVPAPRRNAAGATDELSDEAAGALRVVESRQIRRSGRIPGRLVVRPGARGQGTVAEYSVATAMPDRVAFG
RWLDQAIAQARLAESSCAVLLIHVADFREVDEVFEVRADDILAQDAGALAQAALEPHDFLARLARDEFAVGVPEMVHHGR
AQELGSRVLGSLAEFVASRGLQMQIGVNIGIAIYPRDAQTSESLMQAARVSLTEARESGSNQVRLFNSAAGERARRTRVI
RRDLWTAIQDDALSLQFQPKFDARRRTVVGAEALCRWRHPALGQVSPAEFIAVAEQSSQIDKLDDWVIASVCRHVRQWQD
AGLPLVPVAINVSGLRFASRNFPQYLLEQIHQHDIPPSAITLEITETAAMKDIAKSLETLAELQSLGIQVALDDFGSGYS
SLGYLKRLRVGTLKIDRTLIGGLDADAQGRAIVGSMVALAHELRMKVVAEGVESTSQLEILNEMGCDEVQGYLLSLPLDA
AGFAEALEQKAAAREVQAVR
>Mature_660_residues
MIALSTALLLLAALLGVAAVLGGRQARPEVGARRPLRALTWSAALLSQLTVGLPFVVVISSGAVPAANETAQIAAAFAVA
AAATSAGKLLFAWLRQGARLWRGAAIASALAGAGLVAVAGTRLGRVCGAGSMTARACIDAAGLPHPAWLAGGLTALCLLM
LLVHKAQSRGWVPAPRRNAAGATDELSDEAAGALRVVESRQIRRSGRIPGRLVVRPGARGQGTVAEYSVATAMPDRVAFG
RWLDQAIAQARLAESSCAVLLIHVADFREVDEVFEVRADDILAQDAGALAQAALEPHDFLARLARDEFAVGVPEMVHHGR
AQELGSRVLGSLAEFVASRGLQMQIGVNIGIAIYPRDAQTSESLMQAARVSLTEARESGSNQVRLFNSAAGERARRTRVI
RRDLWTAIQDDALSLQFQPKFDARRRTVVGAEALCRWRHPALGQVSPAEFIAVAEQSSQIDKLDDWVIASVCRHVRQWQD
AGLPLVPVAINVSGLRFASRNFPQYLLEQIHQHDIPPSAITLEITETAAMKDIAKSLETLAELQSLGIQVALDDFGSGYS
SLGYLKRLRVGTLKIDRTLIGGLDADAQGRAIVGSMVALAHELRMKVVAEGVESTSQLEILNEMGCDEVQGYLLSLPLDA
AGFAEALEQKAAAREVQAVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=413, Percent_Identity=29.7820823244552, Blast_Score=192, Evalue=8e-50,
Organism=Escherichia coli, GI87081921, Length=419, Percent_Identity=28.1622911694511, Blast_Score=177, Evalue=2e-45,
Organism=Escherichia coli, GI226510982, Length=454, Percent_Identity=27.7533039647577, Blast_Score=168, Evalue=9e-43,
Organism=Escherichia coli, GI1788502, Length=252, Percent_Identity=34.1269841269841, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1790496, Length=261, Percent_Identity=33.3333333333333, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI87081743, Length=256, Percent_Identity=32.03125, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI87081845, Length=276, Percent_Identity=30.4347826086957, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI87081980, Length=262, Percent_Identity=31.2977099236641, Blast_Score=120, Evalue=4e-28,
Organism=Escherichia coli, GI1787055, Length=286, Percent_Identity=27.6223776223776, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1786507, Length=282, Percent_Identity=29.0780141843972, Blast_Score=109, Evalue=5e-25,
Organism=Escherichia coli, GI1788849, Length=351, Percent_Identity=28.4900284900285, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI87082096, Length=207, Percent_Identity=28.9855072463768, Blast_Score=93, Evalue=6e-20,
Organism=Escherichia coli, GI1789650, Length=427, Percent_Identity=21.7798594847775, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787410, Length=131, Percent_Identity=28.2442748091603, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 70159; Mature: 70159

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIALSTALLLLAALLGVAAVLGGRQARPEVGARRPLRALTWSAALLSQLTVGLPFVVVIS
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
SGAVPAANETAQIAAAFAVAAAATSAGKLLFAWLRQGARLWRGAAIASALAGAGLVAVAG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
TRLGRVCGAGSMTARACIDAAGLPHPAWLAGGLTALCLLMLLVHKAQSRGWVPAPRRNAA
HHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
GATDELSDEAAGALRVVESRQIRRSGRIPGRLVVRPGARGQGTVAEYSVATAMPDRVAFG
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHCCCHHHHHH
RWLDQAIAQARLAESSCAVLLIHVADFREVDEVFEVRADDILAQDAGALAQAALEPHDFL
HHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
ARLARDEFAVGVPEMVHHGRAQELGSRVLGSLAEFVASRGLQMQIGVNIGIAIYPRDAQT
HHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCCH
SESLMQAARVSLTEARESGSNQVRLFNSAAGERARRTRVIRRDLWTAIQDDALSLQFQPK
HHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
FDARRRTVVGAEALCRWRHPALGQVSPAEFIAVAEQSSQIDKLDDWVIASVCRHVRQWQD
CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLPLVPVAINVSGLRFASRNFPQYLLEQIHQHDIPPSAITLEITETAAMKDIAKSLETL
CCCCEEEEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHH
AELQSLGIQVALDDFGSGYSSLGYLKRLRVGTLKIDRTLIGGLDADAQGRAIVGSMVALA
HHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHEEECHHHHCCCCCCCCCCHHHHHHHHHH
HELRMKVVAEGVESTSQLEILNEMGCDEVQGYLLSLPLDAAGFAEALEQKAAAREVQAVR
HHHHHHHHHHHHCCHHHHHHHHHCCHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIALSTALLLLAALLGVAAVLGGRQARPEVGARRPLRALTWSAALLSQLTVGLPFVVVIS
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
SGAVPAANETAQIAAAFAVAAAATSAGKLLFAWLRQGARLWRGAAIASALAGAGLVAVAG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
TRLGRVCGAGSMTARACIDAAGLPHPAWLAGGLTALCLLMLLVHKAQSRGWVPAPRRNAA
HHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
GATDELSDEAAGALRVVESRQIRRSGRIPGRLVVRPGARGQGTVAEYSVATAMPDRVAFG
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHCCCHHHHHH
RWLDQAIAQARLAESSCAVLLIHVADFREVDEVFEVRADDILAQDAGALAQAALEPHDFL
HHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
ARLARDEFAVGVPEMVHHGRAQELGSRVLGSLAEFVASRGLQMQIGVNIGIAIYPRDAQT
HHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCCH
SESLMQAARVSLTEARESGSNQVRLFNSAAGERARRTRVIRRDLWTAIQDDALSLQFQPK
HHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
FDARRRTVVGAEALCRWRHPALGQVSPAEFIAVAEQSSQIDKLDDWVIASVCRHVRQWQD
CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLPLVPVAINVSGLRFASRNFPQYLLEQIHQHDIPPSAITLEITETAAMKDIAKSLETL
CCCCEEEEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHH
AELQSLGIQVALDDFGSGYSSLGYLKRLRVGTLKIDRTLIGGLDADAQGRAIVGSMVALA
HHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHEEECHHHHCCCCCCCCCCHHHHHHHHHH
HELRMKVVAEGVESTSQLEILNEMGCDEVQGYLLSLPLDAAGFAEALEQKAAAREVQAVR
HHHHHHHHHHHHCCHHHHHHHHHCCHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]