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The map label for this gene is ylbK [H]

Identifier: 73539081

GI number: 73539081

Start: 2006216

End: 2008549

Strand: Direct

Name: ylbK [H]

Synonym: Reut_B5258

Alternate gene names: 73539081

Gene position: 2006216-2008549 (Clockwise)

Preceding gene: 73539075

Following gene: 73539090

Centisome position: 73.59

GC content: 65.64

Gene sequence:

>2334_bases
ATGCGGCGTCCGCTGATCTGTCCCATGAACGTTGCGATCCGACCCCGATGGTTGGCTGCGCTGCTCGCTGCCGCACTGCT
GCTGGCAGTCGACAGCGCGCGCGCGGCCGCCGCGACGACCACGGCCACGGAACAGCCAACGCCGGCGCCGGGGCCACCGC
CTGCCGTCACGCCGCCACAGCCCCCGACCGTACCGACCCCGGGCCTCGGCCGTCCGCGCATCTGCCTGGTACTGTCCGGC
GGCGGCGCGCGCGGTGCGGCACATATCGGCGTGCTCAAAGTGCTGGAAGAACTGCGCGTGCCGGTGGACTGTATAGCCGG
CACCAGCATGGGCTCGCTCGTCGGCGGTGCCTATGCCAGCGGCATGTCGCCCGCCGACATGGAAAAGCTCGTGGCGGGCC
TGTCCACCGCGAAAATCTTTAAGGAACGCCCGCCGCGCCAGGACCTGACGGTGCGCCGCAAGCTGGACGACTACACCAAC
CTGTTCACACCCGAGATCGGCATCAAGGACGGGAGCATCCAGTTGCCCAAAGGGGCGGTATCCGGCGTGCAGCTCGAGAC
CGTGCTGCGCCAGCTGGCCAAGGTCCCAGGCTACCGTGACTTCGACCGGCTGCCGATTCCCTACCGTGCCGTGGCCACCG
ATCTCGTCGCGGGCACGCCGGTGGTCTTCAGCAAGGGCGAACTGGCGCAGGTCATGCGCGCCAGCATGTCCGTGCCCGGC
GCGGTCGCGCCGGCCGAATACGAGGGACGGCTGCTCGTGGATGGCGGCCTGACCGATAATCTGCCGGTGGACGTGGCGCG
CCAGATGGGCGCCGACATCGTCATTGCGGTGAACCTCGGCACGCCGCTGATGCGGCGTGACGAACTGAATTCGATTCTCG
GCGTCACGGGACAGATGCTGAACATCCTGACCGAGCAGAACGTGCGCAGTTCACTGGCCTTGCTCAAGTCCACGGATGTG
CTGATCCTGCCGGAACTGGGCGATTTCTCGGCCAGCGACTTCGATCACCTGACCAACACCATTCCCGTCGGCGAAGCCGC
GGCGCACAAGGTGGCCGACCGCCTTGCGCCGCTGGCGCTGCCCCCGGGGCAGTACGCCGCGCTGCGCATCCGCCAGCAAA
CGCTGGATCCGCCGGACCTGCGCCCCGTCGACGAAATCCGCTTCGCGCCGATGCAGCGCGTCAACCCCGGCTATGCCGCG
TCGGTGATGGAGACCAAACCCGGCGAACCGATCGACCAGGCACAGCTTGACCTCGACATGCGGCATCTGTTCGGCACTGG
CGACTTCGAGCATGTGAACTACGGCTTCCTGGAAGAGCCAGGCCGACGCATCATGGCAGTCGATGCCATCGAAAAAACCT
ACGGCCCGAACTATCTGCGCTTCGGCTTGGGATTGACCACGGATTTCCGCGGCGAATCCTATTTCAACCTCGTCGCCAGC
CATCGGCGCCCGTGGATCAACTCGCTCGGCGCCGAATGGCGCAACGACCTGCAGGTCGGCCAGACCTCCGCGCTGCACAG
CGAGTTCTACCAGCCGCTCAACACGCGCCAGTACTTCTTCGTGGCGCCGCGCATCGACCTGGAGCGCAGACCGGTCAACA
TTTTCCAGGGCAACACCCGCATCGCGCAGTACGACGTACGCAGCTATAGCGTGTCGCTGGACTTCGGCAGCCAGTTCACC
AAGTACGGTGAAGCGCGCATCGGCGTGCAAGTCGGCTCTCTCGATGCCTCGCTCAGTACAGGTCCCGCGCAACTGGCGCC
CGAGCCCGGCCATATCCGCCTCGGGGCGATCACGGGGCGACTCTTCCTGGATCAACTCGACAGCACATCTTTTCCCCGCA
GCGGCTATGCCGGCTGGCTGAAACTCTATGCCTCCCAGCCTGGGCTGGGCGCCGAGCAGGCCTATGTCAAAGGCACCATC
GACGGCACCTACGCCTTTTCGTTCGGCAACAACACGTTCAACCTGGGCTTCAAGGCGGGCAGCAAAATCGGCGACAACCC
CCTGCCGCGCTACGACTACTTTCAGTGGGGCGGATTCCTTCAGCAATCGGGCTACAGCACCGGGCAACTCTTGGGCGCCG
ACCTGCAGTTCGCGCGCATTGTCTACTACAACAAGCTTGCACGGCAGAGTCTGCTGGAAGGCGTCTATGCCGGCATGTCG
CTGGAAGCGGGCCGCGTGGGGCAGCCGCTGGTGCCTGGCAGCCCGACCGGGGTGCTCAAGTCGGGGTCGATCTTCCTGGC
GCTGGATAGCCCGGTTGGCCCGCTTTATCTCGCTTACGGGCGGGCTGCCGCGGGCGTCTACAGCTTTTATCTGTTCCTCG
GCAAGCCTTACTGA

Upstream 100 bases:

>100_bases
CGGTGCCACGCGGTTTGCGCCAAGATATCCGCAAGCATGGTCGGCGGCCTTTGCACGGCACGGCCACCCAAGCCAGACCT
GAGCCAGACCCGAGCCGTGC

Downstream 100 bases:

>100_bases
GGGGTTGACTATTCAATTGTTGCTCAGCGTTGCCCCACTAAAGTTGTATGTAATGTCTTAATACATAAGGTATAATGTCC
TTGTCGTTGAGACACAGACC

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 777; Mature: 777

Protein sequence:

>777_residues
MRRPLICPMNVAIRPRWLAALLAAALLLAVDSARAAAATTTATEQPTPAPGPPPAVTPPQPPTVPTPGLGRPRICLVLSG
GGARGAAHIGVLKVLEELRVPVDCIAGTSMGSLVGGAYASGMSPADMEKLVAGLSTAKIFKERPPRQDLTVRRKLDDYTN
LFTPEIGIKDGSIQLPKGAVSGVQLETVLRQLAKVPGYRDFDRLPIPYRAVATDLVAGTPVVFSKGELAQVMRASMSVPG
AVAPAEYEGRLLVDGGLTDNLPVDVARQMGADIVIAVNLGTPLMRRDELNSILGVTGQMLNILTEQNVRSSLALLKSTDV
LILPELGDFSASDFDHLTNTIPVGEAAAHKVADRLAPLALPPGQYAALRIRQQTLDPPDLRPVDEIRFAPMQRVNPGYAA
SVMETKPGEPIDQAQLDLDMRHLFGTGDFEHVNYGFLEEPGRRIMAVDAIEKTYGPNYLRFGLGLTTDFRGESYFNLVAS
HRRPWINSLGAEWRNDLQVGQTSALHSEFYQPLNTRQYFFVAPRIDLERRPVNIFQGNTRIAQYDVRSYSVSLDFGSQFT
KYGEARIGVQVGSLDASLSTGPAQLAPEPGHIRLGAITGRLFLDQLDSTSFPRSGYAGWLKLYASQPGLGAEQAYVKGTI
DGTYAFSFGNNTFNLGFKAGSKIGDNPLPRYDYFQWGGFLQQSGYSTGQLLGADLQFARIVYYNKLARQSLLEGVYAGMS
LEAGRVGQPLVPGSPTGVLKSGSIFLALDSPVGPLYLAYGRAAAGVYSFYLFLGKPY

Sequences:

>Translated_777_residues
MRRPLICPMNVAIRPRWLAALLAAALLLAVDSARAAAATTTATEQPTPAPGPPPAVTPPQPPTVPTPGLGRPRICLVLSG
GGARGAAHIGVLKVLEELRVPVDCIAGTSMGSLVGGAYASGMSPADMEKLVAGLSTAKIFKERPPRQDLTVRRKLDDYTN
LFTPEIGIKDGSIQLPKGAVSGVQLETVLRQLAKVPGYRDFDRLPIPYRAVATDLVAGTPVVFSKGELAQVMRASMSVPG
AVAPAEYEGRLLVDGGLTDNLPVDVARQMGADIVIAVNLGTPLMRRDELNSILGVTGQMLNILTEQNVRSSLALLKSTDV
LILPELGDFSASDFDHLTNTIPVGEAAAHKVADRLAPLALPPGQYAALRIRQQTLDPPDLRPVDEIRFAPMQRVNPGYAA
SVMETKPGEPIDQAQLDLDMRHLFGTGDFEHVNYGFLEEPGRRIMAVDAIEKTYGPNYLRFGLGLTTDFRGESYFNLVAS
HRRPWINSLGAEWRNDLQVGQTSALHSEFYQPLNTRQYFFVAPRIDLERRPVNIFQGNTRIAQYDVRSYSVSLDFGSQFT
KYGEARIGVQVGSLDASLSTGPAQLAPEPGHIRLGAITGRLFLDQLDSTSFPRSGYAGWLKLYASQPGLGAEQAYVKGTI
DGTYAFSFGNNTFNLGFKAGSKIGDNPLPRYDYFQWGGFLQQSGYSTGQLLGADLQFARIVYYNKLARQSLLEGVYAGMS
LEAGRVGQPLVPGSPTGVLKSGSIFLALDSPVGPLYLAYGRAAAGVYSFYLFLGKPY
>Mature_777_residues
MRRPLICPMNVAIRPRWLAALLAAALLLAVDSARAAAATTTATEQPTPAPGPPPAVTPPQPPTVPTPGLGRPRICLVLSG
GGARGAAHIGVLKVLEELRVPVDCIAGTSMGSLVGGAYASGMSPADMEKLVAGLSTAKIFKERPPRQDLTVRRKLDDYTN
LFTPEIGIKDGSIQLPKGAVSGVQLETVLRQLAKVPGYRDFDRLPIPYRAVATDLVAGTPVVFSKGELAQVMRASMSVPG
AVAPAEYEGRLLVDGGLTDNLPVDVARQMGADIVIAVNLGTPLMRRDELNSILGVTGQMLNILTEQNVRSSLALLKSTDV
LILPELGDFSASDFDHLTNTIPVGEAAAHKVADRLAPLALPPGQYAALRIRQQTLDPPDLRPVDEIRFAPMQRVNPGYAA
SVMETKPGEPIDQAQLDLDMRHLFGTGDFEHVNYGFLEEPGRRIMAVDAIEKTYGPNYLRFGLGLTTDFRGESYFNLVAS
HRRPWINSLGAEWRNDLQVGQTSALHSEFYQPLNTRQYFFVAPRIDLERRPVNIFQGNTRIAQYDVRSYSVSLDFGSQFT
KYGEARIGVQVGSLDASLSTGPAQLAPEPGHIRLGAITGRLFLDQLDSTSFPRSGYAGWLKLYASQPGLGAEQAYVKGTI
DGTYAFSFGNNTFNLGFKAGSKIGDNPLPRYDYFQWGGFLQQSGYSTGQLLGADLQFARIVYYNKLARQSLLEGVYAGMS
LEAGRVGQPLVPGSPTGVLKSGSIFLALDSPVGPLYLAYGRAAAGVYSFYLFLGKPY

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=210, Percent_Identity=36.6666666666667, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI260656039, Length=210, Percent_Identity=36.6666666666667, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI116256487, Length=210, Percent_Identity=36.6666666666667, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI260656037, Length=210, Percent_Identity=36.6666666666667, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI260656043, Length=210, Percent_Identity=36.6666666666667, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI148727335, Length=308, Percent_Identity=29.2207792207792, Blast_Score=108, Evalue=2e-23,
Organism=Homo sapiens, GI148727290, Length=308, Percent_Identity=29.2207792207792, Blast_Score=108, Evalue=2e-23,
Organism=Escherichia coli, GI226510936, Length=325, Percent_Identity=29.2307692307692, Blast_Score=107, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI71997299, Length=193, Percent_Identity=32.6424870466321, Blast_Score=78, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71997289, Length=193, Percent_Identity=32.6424870466321, Blast_Score=78, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 83815; Mature: 83815

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRPLICPMNVAIRPRWLAALLAAALLLAVDSARAAAATTTATEQPTPAPGPPPAVTPPQ
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHEECCCCCCCCCCCCCCCCCCCCC
PPTVPTPGLGRPRICLVLSGGGARGAAHIGVLKVLEELRVPVDCIAGTSMGSLVGGAYAS
CCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHC
GMSPADMEKLVAGLSTAKIFKERPPRQDLTVRRKLDDYTNLFTPEIGIKDGSIQLPKGAV
CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCC
SGVQLETVLRQLAKVPGYRDFDRLPIPYRAVATDLVAGTPVVFSKGELAQVMRASMSVPG
CCEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCCC
AVAPAEYEGRLLVDGGLTDNLPVDVARQMGADIVIAVNLGTPLMRRDELNSILGVTGQML
CCCCCCCCCEEEEECCCCCCCCHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
NILTEQNVRSSLALLKSTDVLILPELGDFSASDFDHLTNTIPVGEAAAHKVADRLAPLAL
HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCC
PPGQYAALRIRQQTLDPPDLRPVDEIRFAPMQRVNPGYAASVMETKPGEPIDQAQLDLDM
CCCCCEEEEEEHHCCCCCCCCCHHHHHCCCHHHCCCCCEEEEECCCCCCCHHHHHHHHHH
RHLFGTGDFEHVNYGFLEEPGRRIMAVDAIEKTYGPNYLRFGLGLTTDFRGESYFNLVAS
HHHCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHH
HRRPWINSLGAEWRNDLQVGQTSALHSEFYQPLNTRQYFFVAPRIDLERRPVNIFQGNTR
HCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEECCCE
IAQYDVRSYSVSLDFGSQFTKYGEARIGVQVGSLDASLSTGPAQLAPEPGHIRLGAITGR
EEEEEEEEEEEEECCCCHHHHCCCEEEEEEEECCCCCCCCCCHHCCCCCCCEEEEEEEHH
LFLDQLDSTSFPRSGYAGWLKLYASQPGLGAEQAYVKGTIDGTYAFSFGNNTFNLGFKAG
HHHHHHCCCCCCCCCCCEEHEEEECCCCCCCCCEEEEECCCCEEEEEECCCEEEEEEECC
SKIGDNPLPRYDYFQWGGFLQQSGYSTGQLLGADLQFARIVYYNKLARQSLLEGVYAGMS
CCCCCCCCCCCCCHHHCCHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCE
LEAGRVGQPLVPGSPTGVLKSGSIFLALDSPVGPLYLAYGRAAAGVYSFYLFLGKPY
ECCCCCCCCCCCCCCCCEEECCCEEEEECCCCCCEEEEHHHHHHHHHHHHHEECCCC
>Mature Secondary Structure
MRRPLICPMNVAIRPRWLAALLAAALLLAVDSARAAAATTTATEQPTPAPGPPPAVTPPQ
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHEECCCCCCCCCCCCCCCCCCCCC
PPTVPTPGLGRPRICLVLSGGGARGAAHIGVLKVLEELRVPVDCIAGTSMGSLVGGAYAS
CCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHC
GMSPADMEKLVAGLSTAKIFKERPPRQDLTVRRKLDDYTNLFTPEIGIKDGSIQLPKGAV
CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCC
SGVQLETVLRQLAKVPGYRDFDRLPIPYRAVATDLVAGTPVVFSKGELAQVMRASMSVPG
CCEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCCC
AVAPAEYEGRLLVDGGLTDNLPVDVARQMGADIVIAVNLGTPLMRRDELNSILGVTGQML
CCCCCCCCCEEEEECCCCCCCCHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
NILTEQNVRSSLALLKSTDVLILPELGDFSASDFDHLTNTIPVGEAAAHKVADRLAPLAL
HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCC
PPGQYAALRIRQQTLDPPDLRPVDEIRFAPMQRVNPGYAASVMETKPGEPIDQAQLDLDM
CCCCCEEEEEEHHCCCCCCCCCHHHHHCCCHHHCCCCCEEEEECCCCCCCHHHHHHHHHH
RHLFGTGDFEHVNYGFLEEPGRRIMAVDAIEKTYGPNYLRFGLGLTTDFRGESYFNLVAS
HHHCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHH
HRRPWINSLGAEWRNDLQVGQTSALHSEFYQPLNTRQYFFVAPRIDLERRPVNIFQGNTR
HCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEECCCE
IAQYDVRSYSVSLDFGSQFTKYGEARIGVQVGSLDASLSTGPAQLAPEPGHIRLGAITGR
EEEEEEEEEEEEECCCCHHHHCCCEEEEEEEECCCCCCCCCCHHCCCCCCCEEEEEEEHH
LFLDQLDSTSFPRSGYAGWLKLYASQPGLGAEQAYVKGTIDGTYAFSFGNNTFNLGFKAG
HHHHHHCCCCCCCCCCCEEHEEEECCCCCCCCCEEEEECCCCEEEEEECCCEEEEEEECC
SKIGDNPLPRYDYFQWGGFLQQSGYSTGQLLGADLQFARIVYYNKLARQSLLEGVYAGMS
CCCCCCCCCCCCCHHHCCHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCE
LEAGRVGQPLVPGSPTGVLKSGSIFLALDSPVGPLYLAYGRAAAGVYSFYLFLGKPY
ECCCCCCCCCCCCCCCCEEECCCEEEEECCCCCCEEEEHHHHHHHHHHHHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]