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The map label for this gene is ybhD [H]

Identifier: 73539069

GI number: 73539069

Start: 1996541

End: 1997476

Strand: Reverse

Name: ybhD [H]

Synonym: Reut_B5246

Alternate gene names: 73539069

Gene position: 1997476-1996541 (Counterclockwise)

Preceding gene: 73539073

Following gene: 73539065

Centisome position: 73.27

GC content: 68.16

Gene sequence:

>936_bases
TTGCGTTACGAACTGACCGACCTGCGCCTGTTCCAGGCCATTGCCGACGCGCAGAGCCTTTCCGGCGGGGCGACTGCCAC
GCACATCACGGCGTCGGCGGCGAGCTACCGGCTGAAGAATCTCGAGCATGCAATGGGCACGCCGCTGTTCGTGCGCAATG
CGCGCGGCATGGAGCTGACGCCGGCGGGGGAGACGCTGCTGGTCCACGTGCGCGAACTGCTGCTTGGCGTGGAGCGCATG
CATGGCGAGGTCGGGCGTTTTTCCGCCGGGCTCAAGGGCCACATCCGGCTGCTGGCGAACAGCAGCTCGCTCAACGGCTT
CATCATCCCGAGCGTGAGCCGTTTCCTGACGGCCAACCCGGATGTGAATATCGACCTGGAAGAACGTGCGAGCCAGGCCA
TCCTGACCGCGGTGGCTGCGCATGAAGCCGACGTCGGCATCCTCGCTGGCGACTTCGATACCACCGGCGTACGCGCGGTG
CGCTATGCCGTCGACGAGTTGATTCTTGCCGTGGCGGCGGACCACCCGCTCGCGCGCGAGGCGGAGGTGCGCTTCGGCGC
GGCGCTGGCATTCGATTTCGTATGCATGAGCCGCACGAGCAGCAACTTCCTGTTCCTGCGCGACATGGCGCAGCGTGCGG
GCAAAAGCCCCAATGTGCGACTGCATGCGCACAGCTTCGAGGCGGTGCTGTCGCTGGCGGAGGCGGGAGTCGGTGTGGCG
CTGGTGCCGCGCAGCGTCGCGGCGGCCGCGTTGCGCGACGCGCGCGTGGTGGGCGTGCGGCTGGCCGAATCGTGGGCGCT
GCGTGAACTCAACCTGATCGTGCGCGCCGATGGCAAGCTGCCCGGGTTTGCGGCTGCGTTCGTGCAGTTCCTGCTCAATG
ACCCGCGCGTGGCGGCCACGCGCGAGGGCGGTACGGTCGCGTCGACCGCACCGTGA

Upstream 100 bases:

>100_bases
CTTCAGCGGCGCCCTCTACGGCACAAGTGATGGCATAGAATGACCGCGCCGCCTCCATTCAATCTGGCACGGCGGCTACA
GACACACAAATGGGGTTGCA

Downstream 100 bases:

>100_bases
TGACTGCGTTGATTTACCGCTTGCGATTCAGGAACGTCGCCATGTGATGCTGCGGCTCACCCGTATCGAACGCGCGGCCG
AACTCGGCCACGCTGTTGTT

Product: regulatory protein LysR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MRYELTDLRLFQAIADAQSLSGGATATHITASAASYRLKNLEHAMGTPLFVRNARGMELTPAGETLLVHVRELLLGVERM
HGEVGRFSAGLKGHIRLLANSSSLNGFIIPSVSRFLTANPDVNIDLEERASQAILTAVAAHEADVGILAGDFDTTGVRAV
RYAVDELILAVAADHPLAREAEVRFGAALAFDFVCMSRTSSNFLFLRDMAQRAGKSPNVRLHAHSFEAVLSLAEAGVGVA
LVPRSVAAAALRDARVVGVRLAESWALRELNLIVRADGKLPGFAAAFVQFLLNDPRVAATREGGTVASTAP

Sequences:

>Translated_311_residues
MRYELTDLRLFQAIADAQSLSGGATATHITASAASYRLKNLEHAMGTPLFVRNARGMELTPAGETLLVHVRELLLGVERM
HGEVGRFSAGLKGHIRLLANSSSLNGFIIPSVSRFLTANPDVNIDLEERASQAILTAVAAHEADVGILAGDFDTTGVRAV
RYAVDELILAVAADHPLAREAEVRFGAALAFDFVCMSRTSSNFLFLRDMAQRAGKSPNVRLHAHSFEAVLSLAEAGVGVA
LVPRSVAAAALRDARVVGVRLAESWALRELNLIVRADGKLPGFAAAFVQFLLNDPRVAATREGGTVASTAP
>Mature_311_residues
MRYELTDLRLFQAIADAQSLSGGATATHITASAASYRLKNLEHAMGTPLFVRNARGMELTPAGETLLVHVRELLLGVERM
HGEVGRFSAGLKGHIRLLANSSSLNGFIIPSVSRFLTANPDVNIDLEERASQAILTAVAAHEADVGILAGDFDTTGVRAV
RYAVDELILAVAADHPLAREAEVRFGAALAFDFVCMSRTSSNFLFLRDMAQRAGKSPNVRLHAHSFEAVLSLAEAGVGVA
LVPRSVAAAALRDARVVGVRLAESWALRELNLIVRADGKLPGFAAAFVQFLLNDPRVAATREGGTVASTAP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=293, Percent_Identity=23.8907849829352, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI2367136, Length=247, Percent_Identity=27.5303643724696, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1787806, Length=291, Percent_Identity=26.4604810996564, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI157672245, Length=300, Percent_Identity=26.6666666666667, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1790262, Length=260, Percent_Identity=23.8461538461538, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788887, Length=243, Percent_Identity=25.1028806584362, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787879, Length=299, Percent_Identity=24.7491638795987, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790208, Length=251, Percent_Identity=26.6932270916335, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786713, Length=267, Percent_Identity=24.7191011235955, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788748, Length=244, Percent_Identity=23.7704918032787, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33102; Mature: 33102

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYELTDLRLFQAIADAQSLSGGATATHITASAASYRLKNLEHAMGTPLFVRNARGMELT
CCCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHCCCEEEECCCCCEEC
PAGETLLVHVRELLLGVERMHGEVGRFSAGLKGHIRLLANSSSLNGFIIPSVSRFLTANP
CCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEEECCCCCEEECCCHHHHEECCC
DVNIDLEERASQAILTAVAAHEADVGILAGDFDTTGVRAVRYAVDELILAVAADHPLARE
CCEEEHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
AEVRFGAALAFDFVCMSRTSSNFLFLRDMAQRAGKSPNVRLHAHSFEAVLSLAEAGVGVA
HHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCCEE
LVPRSVAAAALRDARVVGVRLAESWALRELNLIVRADGKLPGFAAAFVQFLLNDPRVAAT
ECCHHHHHHHHHCCCEEEEEEHHHHHHEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEE
REGGTVASTAP
CCCCEECCCCC
>Mature Secondary Structure
MRYELTDLRLFQAIADAQSLSGGATATHITASAASYRLKNLEHAMGTPLFVRNARGMELT
CCCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHCCCEEEECCCCCEEC
PAGETLLVHVRELLLGVERMHGEVGRFSAGLKGHIRLLANSSSLNGFIIPSVSRFLTANP
CCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEEECCCCCEEECCCHHHHEECCC
DVNIDLEERASQAILTAVAAHEADVGILAGDFDTTGVRAVRYAVDELILAVAADHPLARE
CCEEEHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
AEVRFGAALAFDFVCMSRTSSNFLFLRDMAQRAGKSPNVRLHAHSFEAVLSLAEAGVGVA
HHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCCEE
LVPRSVAAAALRDARVVGVRLAESWALRELNLIVRADGKLPGFAAAFVQFLLNDPRVAAT
ECCHHHHHHHHHCCCEEEEEEHHHHHHEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEE
REGGTVASTAP
CCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]