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The map label for this gene is ywbI [H]

Identifier: 73539042

GI number: 73539042

Start: 1966737

End: 1967624

Strand: Direct

Name: ywbI [H]

Synonym: Reut_B5219

Alternate gene names: 73539042

Gene position: 1966737-1967624 (Clockwise)

Preceding gene: 73539040

Following gene: 73539050

Centisome position: 72.14

GC content: 63.96

Gene sequence:

>888_bases
ATGGACATCAAGCACCTACAACTGTTATCCGACATCGTCGAAGCCGGCAGTCTCAGCAAAGTCTGTGCGTCACGCGGCAT
TGCGCAGTCTGCGCTCAGCAAGCACATTGCCGCGCTGGAAGGCGAGTTCGGCGCGAAGCTGTTCTACCGCACCGGCCGCG
GCGTGGTGCTGACGGAATTCGGGCAGTCCATCATGCCGCGCGTGAAGACGCTGCTCGGCGAATTCGAACTGCTCAGGAAC
GATATCCGCGACCGCGCCGAAGTGCCGAGCGGCCCCGTCAAGCTGGCCTTGCAGGCATCGATCACGCAGCAGATCGTCGG
CCCGCTGTTCCAGCGCGTGCGCGCGGATTTCCCGAAGATCGAGTTGCGGCTGATGGAAGGTTTCGCGGGCAATATCGAAG
AAGCGCTGGCCAGCGGACGCACGGATGTGGGCGTGTTTTCGCGCTATGGCGAGCGGATCCACAAGACCGATGAAAAGCTG
GCCACCGACGAGCTCTATCTGATCGCACGTGCGGGTGATCCGAATGTGGCCAGTCGGAGCTGCAGGTTCGCCGACGCTGC
GGCGCTGCCGCTGGTGCTGCCTGGCGCGCCCGATGGCTTCCACATGATGCTGCTGGACGAGGCAAAGAAGGCGGGCGTTC
AGCTGAACACCCAGATCGAGGTCGATTCGCTGACCGCCATGCGCGAGATCGTCGCGAACGGGGCAGCCTACACGATCCTC
ACGCGGCAAGCCGTGGAAGTCGACATGAAGCTCGGCCGCATTGCGGTGAGCCGGATCGTCGACCCGGTCCTCACGCGCAC
GCTGGTGCTGGCCACGAGCACGCAGCGGCCGCTGACGTATGCGAGCCGGACCGTCATCGACCTGATCCGAAAGCTGACAC
GGGCCTGA

Upstream 100 bases:

>100_bases
CTCCTGCTTTCGCACCACGCATTCCGGACACCGCAGCGCGAGCCTTTCGCTACAATCGTCGCGAACCAATCGGAACCGAC
TCCACAGGCGCAGACCGACG

Downstream 100 bases:

>100_bases
GCCCGCACGGGCTTTCGCGTTAATCTCAATCGCTCGATTCAGTCAGCGGCAAACGCAGTGCGGACCGAGCCAAGACCCGC
GATGGTGGTGTCGATGATGT

Product: regulatory protein LysR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MDIKHLQLLSDIVEAGSLSKVCASRGIAQSALSKHIAALEGEFGAKLFYRTGRGVVLTEFGQSIMPRVKTLLGEFELLRN
DIRDRAEVPSGPVKLALQASITQQIVGPLFQRVRADFPKIELRLMEGFAGNIEEALASGRTDVGVFSRYGERIHKTDEKL
ATDELYLIARAGDPNVASRSCRFADAAALPLVLPGAPDGFHMMLLDEAKKAGVQLNTQIEVDSLTAMREIVANGAAYTIL
TRQAVEVDMKLGRIAVSRIVDPVLTRTLVLATSTQRPLTYASRTVIDLIRKLTRA

Sequences:

>Translated_295_residues
MDIKHLQLLSDIVEAGSLSKVCASRGIAQSALSKHIAALEGEFGAKLFYRTGRGVVLTEFGQSIMPRVKTLLGEFELLRN
DIRDRAEVPSGPVKLALQASITQQIVGPLFQRVRADFPKIELRLMEGFAGNIEEALASGRTDVGVFSRYGERIHKTDEKL
ATDELYLIARAGDPNVASRSCRFADAAALPLVLPGAPDGFHMMLLDEAKKAGVQLNTQIEVDSLTAMREIVANGAAYTIL
TRQAVEVDMKLGRIAVSRIVDPVLTRTLVLATSTQRPLTYASRTVIDLIRKLTRA
>Mature_295_residues
MDIKHLQLLSDIVEAGSLSKVCASRGIAQSALSKHIAALEGEFGAKLFYRTGRGVVLTEFGQSIMPRVKTLLGEFELLRN
DIRDRAEVPSGPVKLALQASITQQIVGPLFQRVRADFPKIELRLMEGFAGNIEEALASGRTDVGVFSRYGERIHKTDEKL
ATDELYLIARAGDPNVASRSCRFADAAALPLVLPGAPDGFHMMLLDEAKKAGVQLNTQIEVDSLTAMREIVANGAAYTIL
TRQAVEVDMKLGRIAVSRIVDPVLTRTLVLATSTQRPLTYASRTVIDLIRKLTRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=295, Percent_Identity=24.0677966101695, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1790399, Length=295, Percent_Identity=27.4576271186441, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788297, Length=265, Percent_Identity=26.4150943396226, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787601, Length=184, Percent_Identity=28.2608695652174, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI157672245, Length=271, Percent_Identity=27.3062730627306, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87082132, Length=257, Percent_Identity=24.9027237354086, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789506, Length=245, Percent_Identity=23.265306122449, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788748, Length=288, Percent_Identity=23.6111111111111, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1786401, Length=122, Percent_Identity=28.6885245901639, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32183; Mature: 32183

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIKHLQLLSDIVEAGSLSKVCASRGIAQSALSKHIAALEGEFGAKLFYRTGRGVVLTEF
CCCHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEHHH
GQSIMPRVKTLLGEFELLRNDIRDRAEVPSGPVKLALQASITQQIVGPLFQRVRADFPKI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCHH
ELRLMEGFAGNIEEALASGRTDVGVFSRYGERIHKTDEKLATDELYLIARAGDPNVASRS
HHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHCC
CRFADAAALPLVLPGAPDGFHMMLLDEAKKAGVQLNTQIEVDSLTAMREIVANGAAYTIL
CCHHHHCCCCEEECCCCCCEEEHEEHHHHHCCCEEEEEEEHHHHHHHHHHHHCCCEEEEE
TRQAVEVDMKLGRIAVSRIVDPVLTRTLVLATSTQRPLTYASRTVIDLIRKLTRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDIKHLQLLSDIVEAGSLSKVCASRGIAQSALSKHIAALEGEFGAKLFYRTGRGVVLTEF
CCCHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEHHH
GQSIMPRVKTLLGEFELLRNDIRDRAEVPSGPVKLALQASITQQIVGPLFQRVRADFPKI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCHH
ELRLMEGFAGNIEEALASGRTDVGVFSRYGERIHKTDEKLATDELYLIARAGDPNVASRS
HHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHCC
CRFADAAALPLVLPGAPDGFHMMLLDEAKKAGVQLNTQIEVDSLTAMREIVANGAAYTIL
CCHHHHCCCCEEECCCCCCEEEHEEHHHHHCCCEEEEEEEHHHHHHHHHHHHCCCEEEEE
TRQAVEVDMKLGRIAVSRIVDPVLTRTLVLATSTQRPLTYASRTVIDLIRKLTRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]