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The map label for this gene is cph2 [H]

Identifier: 73538689

GI number: 73538689

Start: 1575888

End: 1577486

Strand: Reverse

Name: cph2 [H]

Synonym: Reut_B4864

Alternate gene names: 73538689

Gene position: 1577486-1575888 (Counterclockwise)

Preceding gene: 73538690

Following gene: 73538682

Centisome position: 57.86

GC content: 67.29

Gene sequence:

>1599_bases
ATGCCATCGTATCCCCTGGTCCTCTGCCTGACCATCGCCGTCGTATGCAGTATCGGCATGGCCGTCATGGCCTGGCCGCG
GCGCGATGACCCGACCATCCAGGCGTTCCTGGTGCTGGCCGGCGGCGTGGTGATCTGGAGCGGCGGGCGGCTGCTCGAGA
TCAGTTCCGCCGACCTGCCCGGGCGGATACTGTGGGCCAAGATCCAGTATTTCGGGATCGTGGCCGTGCCGATCGGCTGG
CTGGTGGCGATGATCCACCTGAGCCGGCCGCGTTACGTGGTGCCATGGTCGTTGTTGTCGATCCCGATCCTGATGGCCGT
GCTGACCGTGGTGCTGGTGCTGACCAATACCCACCATCACCTGGTATGGACGCGGATTACGCTGATGCCGCCGGGTGTGG
CGCCTGGTGCCGTTTTCGAGCATGGCCCCGGCTATGGCGTCATGGCGGCCTGGACCTATCTGCTGCTCGCGCTGGGCTTC
TACTTCCTCGTCACGGCGGAGGTGCCCAACGACGCCTTGTCGCGGCCCGGGCGGGCGGTGCTGGCGGGCAGCCTGGCCTT
TCCGCTGCTCACGCATATCGCCTATCTGCTGCGCTGGACCGGGCCGCTGGGCGGCGACCTGACGCCGGCCACGTTCTCGC
TGATGGCGGTGCTGGTCTGGTTCTGCGGATTGCGCACGCATCTCGACGACATTGGCCACTACGCGCGCCTGCGCGTATTC
GATGCGCTGAGGGAGGGATGCGTGGTCCTCGGTGCTGACGACAAGATCGTCGAATACAACCCCGCGGCGGCGAGGCTGGT
GCCAGCGTTGCGCCGTGGGCAGCCGGTGCCGGCCGGCTGGGAGGAGGTGTTCCTGCGCCCGCAGAGCGCCGACAGTCAGA
CCGTACGCCCGTTCATTCCACCGGGCGCGCACTTCGAACTGACAGCAGAAGCCGTAACGCGCATGGATGGCAAGCGCATC
GGCACGCTGGTGTTCCTGCTCGACATCAGCCGCTACCAGTCGCGCGAACTGGCGCTGACGGCCCGGCTCGGGCAGACCGA
AGAGCAGTTGTCGCGCGTGCAGGCGGATCTCGACATCGACGCGCTGACCGGTATCCCGAACCGCCGCTACTTCCAGCGCG
AGGCAATGCTCGCGGTGAGCCGGGCGTTCGAGCGGCGTGAAGAGATGGGACTGCTGATCCTCGATGTGGATCTGTTCAAG
CAGTACAACGATCTGTATGGCCACCCGCGCGGCGACGAATGCCTGCGCCAGGTCGCTGCCGCGCTGACGCGGATGCTGGC
AGGCACGCAGTTCTGCGCGCGCCTGGGAGGGGAGGAATTTGCAGTCGTGCTGCCCGCTTCCACACAGGAAGAGACTCGCA
CCGTGGCGCGGGCTATGGTCGAGGCAGTGCGCGAACTCGGCATCCCGCACCATGGAACGCCGGTGCAGCCGATCGTGACG
ATCAGCGTCGGCGCGGTTTGCGCGGCGCCCGATGCGCCGCGGCTGGAGCCGCTCCTGCACCGGGCCGACAGCGCGATGTA
CCAGGCCAAGCGGGCAGGGCGGAACCGCTTTGTGTTCGACGGGCAGGCACACGCGGATGCCTGGCATGGCCAAGGCTGA

Upstream 100 bases:

>100_bases
GGTAAGCTATGTCCGAATACGCCTTTCCCGGTGAACCCGGATCGCCTCCGATATCCATACCACGATGCACATCGTGTTCG
CGAAATAGAATCCGGCCCTG

Downstream 100 bases:

>100_bases
GCAGAGCTGCGCTAAGCCACTTCCGCGACCCGAACCTCCACCAGCAGCTTCTTCAGTTCCGGCACGCAGGATCCGCAATT
GCCACCTGCCTTTACGCAGG

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 532; Mature: 531

Protein sequence:

>532_residues
MPSYPLVLCLTIAVVCSIGMAVMAWPRRDDPTIQAFLVLAGGVVIWSGGRLLEISSADLPGRILWAKIQYFGIVAVPIGW
LVAMIHLSRPRYVVPWSLLSIPILMAVLTVVLVLTNTHHHLVWTRITLMPPGVAPGAVFEHGPGYGVMAAWTYLLLALGF
YFLVTAEVPNDALSRPGRAVLAGSLAFPLLTHIAYLLRWTGPLGGDLTPATFSLMAVLVWFCGLRTHLDDIGHYARLRVF
DALREGCVVLGADDKIVEYNPAAARLVPALRRGQPVPAGWEEVFLRPQSADSQTVRPFIPPGAHFELTAEAVTRMDGKRI
GTLVFLLDISRYQSRELALTARLGQTEEQLSRVQADLDIDALTGIPNRRYFQREAMLAVSRAFERREEMGLLILDVDLFK
QYNDLYGHPRGDECLRQVAAALTRMLAGTQFCARLGGEEFAVVLPASTQEETRTVARAMVEAVRELGIPHHGTPVQPIVT
ISVGAVCAAPDAPRLEPLLHRADSAMYQAKRAGRNRFVFDGQAHADAWHGQG

Sequences:

>Translated_532_residues
MPSYPLVLCLTIAVVCSIGMAVMAWPRRDDPTIQAFLVLAGGVVIWSGGRLLEISSADLPGRILWAKIQYFGIVAVPIGW
LVAMIHLSRPRYVVPWSLLSIPILMAVLTVVLVLTNTHHHLVWTRITLMPPGVAPGAVFEHGPGYGVMAAWTYLLLALGF
YFLVTAEVPNDALSRPGRAVLAGSLAFPLLTHIAYLLRWTGPLGGDLTPATFSLMAVLVWFCGLRTHLDDIGHYARLRVF
DALREGCVVLGADDKIVEYNPAAARLVPALRRGQPVPAGWEEVFLRPQSADSQTVRPFIPPGAHFELTAEAVTRMDGKRI
GTLVFLLDISRYQSRELALTARLGQTEEQLSRVQADLDIDALTGIPNRRYFQREAMLAVSRAFERREEMGLLILDVDLFK
QYNDLYGHPRGDECLRQVAAALTRMLAGTQFCARLGGEEFAVVLPASTQEETRTVARAMVEAVRELGIPHHGTPVQPIVT
ISVGAVCAAPDAPRLEPLLHRADSAMYQAKRAGRNRFVFDGQAHADAWHGQG
>Mature_531_residues
PSYPLVLCLTIAVVCSIGMAVMAWPRRDDPTIQAFLVLAGGVVIWSGGRLLEISSADLPGRILWAKIQYFGIVAVPIGWL
VAMIHLSRPRYVVPWSLLSIPILMAVLTVVLVLTNTHHHLVWTRITLMPPGVAPGAVFEHGPGYGVMAAWTYLLLALGFY
FLVTAEVPNDALSRPGRAVLAGSLAFPLLTHIAYLLRWTGPLGGDLTPATFSLMAVLVWFCGLRTHLDDIGHYARLRVFD
ALREGCVVLGADDKIVEYNPAAARLVPALRRGQPVPAGWEEVFLRPQSADSQTVRPFIPPGAHFELTAEAVTRMDGKRIG
TLVFLLDISRYQSRELALTARLGQTEEQLSRVQADLDIDALTGIPNRRYFQREAMLAVSRAFERREEMGLLILDVDLFKQ
YNDLYGHPRGDECLRQVAAALTRMLAGTQFCARLGGEEFAVVLPASTQEETRTVARAMVEAVRELGIPHHGTPVQPIVTI
SVGAVCAAPDAPRLEPLLHRADSAMYQAKRAGRNRFVFDGQAHADAWHGQG

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=36.6459627329193, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1786584, Length=169, Percent_Identity=34.3195266272189, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI145693134, Length=209, Percent_Identity=33.4928229665072, Blast_Score=96, Evalue=8e-21,
Organism=Escherichia coli, GI1788381, Length=229, Percent_Identity=28.3842794759825, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI1787816, Length=190, Percent_Identity=32.1052631578947, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI1787541, Length=176, Percent_Identity=33.5227272727273, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=34.1176470588235, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787802, Length=169, Percent_Identity=28.9940828402367, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081977, Length=152, Percent_Identity=32.2368421052632, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1788085, Length=194, Percent_Identity=25.2577319587629, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1788956, Length=198, Percent_Identity=30.8080808080808, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87082007, Length=162, Percent_Identity=30.2469135802469, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 58404; Mature: 58273

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSYPLVLCLTIAVVCSIGMAVMAWPRRDDPTIQAFLVLAGGVVIWSGGRLLEISSADLP
CCCCHHHHHHHHHHHHHCCHHHEECCCCCCHHHHHHHHHHCCEEEECCCCEEEECCCCCC
GRILWAKIQYFGIVAVPIGWLVAMIHLSRPRYVVPWSLLSIPILMAVLTVVLVLTNTHHH
CCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCE
LVWTRITLMPPGVAPGAVFEHGPGYGVMAAWTYLLLALGFYFLVTAEVPNDALSRPGRAV
EEEEEEEEECCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCHHHCCCCCEE
LAGSLAFPLLTHIAYLLRWTGPLGGDLTPATFSLMAVLVWFCGLRTHLDDIGHYARLRVF
EEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DALREGCVVLGADDKIVEYNPAAARLVPALRRGQPVPAGWEEVFLRPQSADSQTVRPFIP
HHHHCCEEEECCCCCEEEECCHHHHHHHHHHCCCCCCCCHHHHEECCCCCCCCCCCCCCC
PGAHFELTAEAVTRMDGKRIGTLVFLLDISRYQSRELALTARLGQTEEQLSRVQADLDID
CCCCEEEEHHHHHHCCCCHHHHEEEEEEHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHH
ALTGIPNRRYFQREAMLAVSRAFERREEMGLLILDVDLFKQYNDLYGHPRGDECLRQVAA
HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHCCCCCHHHHHHHHHH
ALTRMLAGTQFCARLGGEEFAVVLPASTQEETRTVARAMVEAVRELGIPHHGTPVQPIVT
HHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
ISVGAVCAAPDAPRLEPLLHRADSAMYQAKRAGRNRFVFDGQAHADAWHGQG
EEECCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCC
>Mature Secondary Structure 
PSYPLVLCLTIAVVCSIGMAVMAWPRRDDPTIQAFLVLAGGVVIWSGGRLLEISSADLP
CCCHHHHHHHHHHHHHCCHHHEECCCCCCHHHHHHHHHHCCEEEECCCCEEEECCCCCC
GRILWAKIQYFGIVAVPIGWLVAMIHLSRPRYVVPWSLLSIPILMAVLTVVLVLTNTHHH
CCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCE
LVWTRITLMPPGVAPGAVFEHGPGYGVMAAWTYLLLALGFYFLVTAEVPNDALSRPGRAV
EEEEEEEEECCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCHHHCCCCCEE
LAGSLAFPLLTHIAYLLRWTGPLGGDLTPATFSLMAVLVWFCGLRTHLDDIGHYARLRVF
EEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DALREGCVVLGADDKIVEYNPAAARLVPALRRGQPVPAGWEEVFLRPQSADSQTVRPFIP
HHHHCCEEEECCCCCEEEECCHHHHHHHHHHCCCCCCCCHHHHEECCCCCCCCCCCCCCC
PGAHFELTAEAVTRMDGKRIGTLVFLLDISRYQSRELALTARLGQTEEQLSRVQADLDID
CCCCEEEEHHHHHHCCCCHHHHEEEEEEHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHH
ALTGIPNRRYFQREAMLAVSRAFERREEMGLLILDVDLFKQYNDLYGHPRGDECLRQVAA
HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHCCCCCHHHHHHHHHH
ALTRMLAGTQFCARLGGEEFAVVLPASTQEETRTVARAMVEAVRELGIPHHGTPVQPIVT
HHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
ISVGAVCAAPDAPRLEPLLHRADSAMYQAKRAGRNRFVFDGQAHADAWHGQG
EEECCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]