Click here to switch to the map view.

The map label for this gene is glxA [H]

Identifier: 73538634

GI number: 73538634

Start: 1508990

End: 1509985

Strand: Reverse

Name: glxA [H]

Synonym: Reut_B4809

Alternate gene names: 73538634

Gene position: 1509985-1508990 (Counterclockwise)

Preceding gene: 73538635

Following gene: 73538633

Centisome position: 55.39

GC content: 63.96

Gene sequence:

>996_bases
GTGAGGTCCGTTGCTGCCGCGCTGCCTGACAGCGCTTCATCGCCGATGTCTTCGCTCGCGCATTTCGGCTTTCTGACGCT
GCCCGATTTCTCGATGATTGCGTTTTCGAGCGCGGTCGAAGTGCTGCGCATGGCGAACTATGTCGCGCGCGCCGAGCATT
ACACGTGGTCGATCTATTCGTGCGGCGGCGCACCGGTGCGCGCGAGCAATGGCATCGCGGTGCGGCCTACGCGCGCAATC
GATACCGCGGAATTGCCGGACGTGATGATTGTTTGCGGGGGCATTCGCATCCGCGATGCAGTCGTTGATGGCACGCGCGC
GATGCTTGCGAATCTCGCGGAACGGAACATGCCGCTTGGCGGCATCTGCACGGGCGCCTATGCGCTGATGTCGTCCAGCC
TGCTCGACGGCTACCGCTGCGCCGTGCATTGGGAGAACCGCTCAGCGCTGCACGACGAGTTTCCGCGGGTGCAGTTCGCC
GACGAATTGTTCGTAATCGACCGGGACCGGCTTACCTGCACGGGCGGCACAGCACCGATCGACATGATGCTGAACCTCGT
CGGCTTGCGCTTCGGCCGGCAGTTGGCCGCGCAGGTCTCCGAACAGTTCATTCTCGAGCGGATCCGTGGCGCGACCGATC
CGCAGCCGATCCCGGTCGATGCACGGGTCGGCCTCTCGCGGGCGGAGCTGATCGAGGTCGTGCGGCTGATGGAAGCCAAT
ATCGAGGAACCGCTGTCGCTCGACGAGCTGGCGCGGCTGGTCCAGCTATCGCAGCGGCATCTGCAGCGGATATTCAAGTT
CTATCTGAACGTGTCGCCAACCCACCACTACCTGACCGTGCGCCTGAAACGTGCGCGTGAACTGCTGCGTACGACCAACG
CGTCAATCGCCCGTGTGACAGCTGTCTGCGGGTTTCACTCGCCGTGCCATTTCAGCAAGGCCTACCGCGCCCAGTTCGGC
CATGCGCCTAGCCACGAGCGCCGACCGGCCGGATGA

Upstream 100 bases:

>100_bases
GTGAAGGCACCGCTTCTCTCGGGGCTCAGGCAACTGTTCAGCGCCAAGGCCACGACGGCCCGGGCCTGATGCCGGCTCAT
CTGTCCGCCAGGAGCGCGCT

Downstream 100 bases:

>100_bases
TCGATGGGGAAGCCAGGGACGGAGGCCCGGTATATGAGGCTGTATTGCCGCATCCAGTTTCGCAGTATCCAGTTTCGCCA
ACGGAAAGGACGAGAACCAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MRSVAAALPDSASSPMSSLAHFGFLTLPDFSMIAFSSAVEVLRMANYVARAEHYTWSIYSCGGAPVRASNGIAVRPTRAI
DTAELPDVMIVCGGIRIRDAVVDGTRAMLANLAERNMPLGGICTGAYALMSSSLLDGYRCAVHWENRSALHDEFPRVQFA
DELFVIDRDRLTCTGGTAPIDMMLNLVGLRFGRQLAAQVSEQFILERIRGATDPQPIPVDARVGLSRAELIEVVRLMEAN
IEEPLSLDELARLVQLSQRHLQRIFKFYLNVSPTHHYLTVRLKRARELLRTTNASIARVTAVCGFHSPCHFSKAYRAQFG
HAPSHERRPAG

Sequences:

>Translated_331_residues
MRSVAAALPDSASSPMSSLAHFGFLTLPDFSMIAFSSAVEVLRMANYVARAEHYTWSIYSCGGAPVRASNGIAVRPTRAI
DTAELPDVMIVCGGIRIRDAVVDGTRAMLANLAERNMPLGGICTGAYALMSSSLLDGYRCAVHWENRSALHDEFPRVQFA
DELFVIDRDRLTCTGGTAPIDMMLNLVGLRFGRQLAAQVSEQFILERIRGATDPQPIPVDARVGLSRAELIEVVRLMEAN
IEEPLSLDELARLVQLSQRHLQRIFKFYLNVSPTHHYLTVRLKRARELLRTTNASIARVTAVCGFHSPCHFSKAYRAQFG
HAPSHERRPAG
>Mature_331_residues
MRSVAAALPDSASSPMSSLAHFGFLTLPDFSMIAFSSAVEVLRMANYVARAEHYTWSIYSCGGAPVRASNGIAVRPTRAI
DTAELPDVMIVCGGIRIRDAVVDGTRAMLANLAERNMPLGGICTGAYALMSSSLLDGYRCAVHWENRSALHDEFPRVQFA
DELFVIDRDRLTCTGGTAPIDMMLNLVGLRFGRQLAAQVSEQFILERIRGATDPQPIPVDARVGLSRAELIEVVRLMEAN
IEEPLSLDELARLVQLSQRHLQRIFKFYLNVSPTHHYLTVRLKRARELLRTTNASIARVTAVCGFHSPCHFSKAYRAQFG
HAPSHERRPAG

Specific function: Unknown

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510985, Length=105, Percent_Identity=29.5238095238095, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36550; Mature: 36550

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSVAAALPDSASSPMSSLAHFGFLTLPDFSMIAFSSAVEVLRMANYVARAEHYTWSIYS
CCCCHHCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
CGGAPVRASNGIAVRPTRAIDTAELPDVMIVCGGIRIRDAVVDGTRAMLANLAERNMPLG
CCCCCEECCCCEEECCCCCCCCCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHCCCCC
GICTGAYALMSSSLLDGYRCAVHWENRSALHDEFPRVQFADELFVIDRDRLTCTGGTAPI
HHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCCCEECCEEEEEECCCEEECCCCCHH
DMMLNLVGLRFGRQLAAQVSEQFILERIRGATDPQPIPVDARVGLSRAELIEVVRLMEAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCC
IEEPLSLDELARLVQLSQRHLQRIFKFYLNVSPTHHYLTVRLKRARELLRTTNASIARVT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHCCCHHHHHH
AVCGFHSPCHFSKAYRAQFGHAPSHERRPAG
HHHCCCCCHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MRSVAAALPDSASSPMSSLAHFGFLTLPDFSMIAFSSAVEVLRMANYVARAEHYTWSIYS
CCCCHHCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
CGGAPVRASNGIAVRPTRAIDTAELPDVMIVCGGIRIRDAVVDGTRAMLANLAERNMPLG
CCCCCEECCCCEEECCCCCCCCCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHCCCCC
GICTGAYALMSSSLLDGYRCAVHWENRSALHDEFPRVQFADELFVIDRDRLTCTGGTAPI
HHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCCCEECCEEEEEECCCEEECCCCCHH
DMMLNLVGLRFGRQLAAQVSEQFILERIRGATDPQPIPVDARVGLSRAELIEVVRLMEAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCC
IEEPLSLDELARLVQLSQRHLQRIFKFYLNVSPTHHYLTVRLKRARELLRTTNASIARVT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHCCCHHHHHH
AVCGFHSPCHFSKAYRAQFGHAPSHERRPAG
HHHCCCCCHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]