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The map label for this gene is ycaC [H]

Identifier: 73538513

GI number: 73538513

Start: 1384535

End: 1385212

Strand: Direct

Name: ycaC [H]

Synonym: Reut_B4687

Alternate gene names: 73538513

Gene position: 1384535-1385212 (Clockwise)

Preceding gene: 73538512

Following gene: 73538525

Centisome position: 50.79

GC content: 63.86

Gene sequence:

>678_bases
ATGAGCAGCCCCGCCAATTTCAACGGCAAGCGTCCGGTCATCGATCCCTCCGATACGGCCATGCTGCTGATCGACCACCA
GAGCGGCCTGTTCCAGACCGTGGGCGACATGCCCATGCCGGAACTGCGCCAGCGCGCCGCCGCGCTCGCGAAGATGGCCA
CGCTGAGCAAGCTGCCCGTCATCACGACAGCCTCGGTGCCGCAGGGCCCGAACGGTCCGTTGATCCCGGAAATCCATGAA
AACGCACCGCATGCGAAGTACGTCGCACGCAAGGGCGAGATCAACGCCTGGGACAACCCCGAGTTCGTCGCCGCGGTGGA
GGCCACCGGCAAGAAAACGCTGATCATCGCCGGCACCATCACCAGCGTGTGCATGGCCTTCCCGTCGATCAGCGCGGTCG
CCGACGGCTACAAGGTGTTTGCCGTAGTCGATGCCTCGGGCACGTACTCGAAGATGGCGCAGGAAATCACGCTGGCGCGT
GTGGTTCAGGCCGGCGTGGTGCCAATGGATACGGCCGCCGTCGCCTCCGAACTGCAGCGCACCTGGCATCGCGATGATGC
GCAGCAGTGGGCCGAGGTCTACACCAAGATCTTCCCCGCCTATCAACTGCTGATCGAAAGCTATATGAAGGCGCAGTCGG
TGCAGAAGGACGGCGAGGTTCTGGACTCCGCACGCTGA

Upstream 100 bases:

>100_bases
TCTGACTACCACGACGCCCGTCTATCGATTTTCTCTGCCGCCTCTTGGCGGTAGGCCCCCTGCCGGCTTCCCGGCACCAA
CCGTTCCAAGGAGATACACC

Downstream 100 bases:

>100_bases
TCCTCAACAGCGGCATGGCCTTTGCGGCCATGCCGCCGCGCATCAGCCGCGCTCGCCAGGCGCTGCTTGGCGCTGCAACC
ATGGATATCGCTCGGTATCG

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MSSPANFNGKRPVIDPSDTAMLLIDHQSGLFQTVGDMPMPELRQRAAALAKMATLSKLPVITTASVPQGPNGPLIPEIHE
NAPHAKYVARKGEINAWDNPEFVAAVEATGKKTLIIAGTITSVCMAFPSISAVADGYKVFAVVDASGTYSKMAQEITLAR
VVQAGVVPMDTAAVASELQRTWHRDDAQQWAEVYTKIFPAYQLLIESYMKAQSVQKDGEVLDSAR

Sequences:

>Translated_225_residues
MSSPANFNGKRPVIDPSDTAMLLIDHQSGLFQTVGDMPMPELRQRAAALAKMATLSKLPVITTASVPQGPNGPLIPEIHE
NAPHAKYVARKGEINAWDNPEFVAAVEATGKKTLIIAGTITSVCMAFPSISAVADGYKVFAVVDASGTYSKMAQEITLAR
VVQAGVVPMDTAAVASELQRTWHRDDAQQWAEVYTKIFPAYQLLIESYMKAQSVQKDGEVLDSAR
>Mature_224_residues
SSPANFNGKRPVIDPSDTAMLLIDHQSGLFQTVGDMPMPELRQRAAALAKMATLSKLPVITTASVPQGPNGPLIPEIHEN
APHAKYVARKGEINAWDNPEFVAAVEATGKKTLIIAGTITSVCMAFPSISAVADGYKVFAVVDASGTYSKMAQEITLARV
VQAGVVPMDTAAVASELQRTWHRDDAQQWAEVYTKIFPAYQLLIESYMKAQSVQKDGEVLDSAR

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787124, Length=195, Percent_Identity=45.6410256410256, Blast_Score=184, Evalue=4e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 24258; Mature: 24127

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPANFNGKRPVIDPSDTAMLLIDHQSGLFQTVGDMPMPELRQRAAALAKMATLSKLPV
CCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCE
ITTASVPQGPNGPLIPEIHENAPHAKYVARKGEINAWDNPEFVAAVEATGKKTLIIAGTI
EEECCCCCCCCCCCCCHHCCCCCCHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEHHH
TSVCMAFPSISAVADGYKVFAVVDASGTYSKMAQEITLARVVQAGVVPMDTAAVASELQR
HHHHHHHCCHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
TWHRDDAQQWAEVYTKIFPAYQLLIESYMKAQSVQKDGEVLDSAR
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSPANFNGKRPVIDPSDTAMLLIDHQSGLFQTVGDMPMPELRQRAAALAKMATLSKLPV
CCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCE
ITTASVPQGPNGPLIPEIHENAPHAKYVARKGEINAWDNPEFVAAVEATGKKTLIIAGTI
EEECCCCCCCCCCCCCHHCCCCCCHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEHHH
TSVCMAFPSISAVADGYKVFAVVDASGTYSKMAQEITLARVVQAGVVPMDTAAVASELQR
HHHHHHHCCHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
TWHRDDAQQWAEVYTKIFPAYQLLIESYMKAQSVQKDGEVLDSAR
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 9782055 [H]