| Definition | Ralstonia eutropha JMP134 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_007348 |
| Length | 2,726,152 |
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The map label for this gene is cyoB [H]
Identifier: 73538405
GI number: 73538405
Start: 1257172
End: 1259151
Strand: Reverse
Name: cyoB [H]
Synonym: Reut_B4578
Alternate gene names: 73538405
Gene position: 1259151-1257172 (Counterclockwise)
Preceding gene: 73538406
Following gene: 73538404
Centisome position: 46.19
GC content: 62.98
Gene sequence:
>1980_bases ATGTTTGGAAAACTCACCCTCGCGGCCATCCCCACCCACGAGCCCATCATCATGGGCACGCTGGTGGCGGTGCTGCTGCT CGGCGGCGCCCTGGTGGGCGCCATCACTTACTACCGCAAATGGTCCTATCTGTGGACCGAGTGGATCTGCTCGGTCGACC ACAAGCGCATCGGCGTCATGTACATCATCATGGCGCTGATCATGCTGCTGCGTGGCTTTGCCGATGCCATCATGATGCGC ACGCAGCAGGCCATTGCCGTGGGCGAGGCCGCGGGCTACCTGCCGCCGCATCACTACGACCAGATCTTCACGGCGCATGG CGTGATCATGATCTTCTTCGTGGCCACGCCGTTCATCCTCGGCCTGATGAACGTCATCGTCCCGCTGCAGATTGGCGCGC GCGACGTTGCGTTCCCGTTCGTCAACTCGCTGAGCTTCTGGATGTCGGCGGTCGGCGCCGTGCTGGTGATGATGTCGATG TTCGTCGGCGACTTCGCGGCCACGGGCTGGGTCGCTTATCCGCCGCTGTCAGGGCTCGGGTATAGCCCGACAGTCGGGGT CGACTACTACATCTGGTCGCTGCAGATATCGGGGCTGGGGACGACGCTCACGGGCATCAATTTCATCGCGACGATCCTGC GCATGCGCGCGCCGGGCATGAACCTGATGAAGATGCCGGTGTTCACGTGGACCGCACTGATCACCAACATCCTGATCGTC GCGATCTTCCCGGTACTGACCGCCACGCTCGCGCTGCTGACGGCCGACCGCTACCTCGACATGCACTTCTTCACGAACGA GCTTGGCGGCAACGCCATGATGTACGTGAACCTGATCTGGATCTGGGGCCACCCCGAGGTCTATGTGCTGATCCTGCCGT GCTTCGGCGCGTTCTCGGAAATCATCGCCACGTTCTCGCGCAAGCCGCTGTTCGGCTACAAGTCGATGGTGTACGCGACT TCGTCGATCGGCGTGCTGTCGTTCTTCGTCTGGCTGCACCACTTCTTCACGATGGGATCGGGCGCCAACGTCAATGCGTT CTTCGGCATCATGACGTCGATCATCTCGATCCCGACCGGTGTGAAGCTGTTCAACTGGCTGTTCACGATGTACCGCGGGC GGATCCGCTTCCATTCGTCGACGCTGTGGACCATCGGCTTTATGGTGACCTTCGCCATCGGCGGCATGACCGGCGTGCTG CTGGCGGTGCCCGGCGCGGATTTCGTGCTGCACAACAGCCTGTTCCTGGTTGCCCACTTCCATAACGTGATCATTGGCGG CGTGGTGTTCGGCTGCCTGGCGGCCATGTCGTTCTGGTTCCCGAAGGTGTTCGGCTTCCGGCTCAACGAGTTCTGGGGCA AGGTGTCGTTCTGGTGCTGGCTGATCGGCTTCTGCCTGGCGTTCCTGCCGCTGTACGGCCTTGGCATGAAGGGCATGACG CGCCGGATGAACCACTACGTCAACCCCGAATGGCAGCCGTGGCTCATCGTCGCGATGATCGGCGCGCTCATCATCGGCGC CGGCATCCTGGCACTGCTGTGGCAGATCTACGTCAGCGTGCGCGACCGCGAGCAGAACCGCGACCTGACCGGCGACCCGT GGAACGCGCGCAGTCTCGAATGGTCGACGCCGTCGCCCGCGCCGCACTACAACTTCGCGATCGTGCCGAACATCACGTCG CTCGAGCAGCATTGGGACGACAAGGAAGCTGGACGCGCATGGCAGGCGCCGGCGCGCTACGAAGACATCCACATGCCGCG CCCGACGGCGGCGGGCTTTATCGTGTCGATGTTCGGGCTGGTGCTCTGCTTCGGCTTCGTGTGGCACATCTGGTGGCTGG CCGGGGCCGGTCTTGCCGGGATGATCGCCACCTTCATTGCGCGCTCGTATGACCGCGACGTCGACTACTACGTGCCGGCG GAGGAAGTCGAGCGCACCGAACGCGCGCGCTTCGAGCAGATGCGGCAAGCCACTCTCTGA
Upstream 100 bases:
>100_bases CGTGTGCCGCTCCGACAGCCCGGCCACGCTGCAAGCGGCGCTCTCTCTGCCCGCGCCGGCTACCCCTATCTCCGCGACCC CCGCGACCATTCGCTAAGCC
Downstream 100 bases:
>100_bases CAGACATGGAAACCACTTACAAGATCGGGACGGACGCGGTTGCCGTTCCCCACAGCGCCGGCGTCCATCACGCAGCACAC ACCGGTGCTGAGCACGACGC
Product: cytochrome-c oxidase
Products: NA
Alternate protein names: Cytochrome o subunit 1; Cytochrome o ubiquinol oxidase subunit 1; Oxidase BO(3) subunit 1; Ubiquinol oxidase chain A; Ubiquinol oxidase polypeptide I [H]
Number of amino acids: Translated: 659; Mature: 659
Protein sequence:
>659_residues MFGKLTLAAIPTHEPIIMGTLVAVLLLGGALVGAITYYRKWSYLWTEWICSVDHKRIGVMYIIMALIMLLRGFADAIMMR TQQAIAVGEAAGYLPPHHYDQIFTAHGVIMIFFVATPFILGLMNVIVPLQIGARDVAFPFVNSLSFWMSAVGAVLVMMSM FVGDFAATGWVAYPPLSGLGYSPTVGVDYYIWSLQISGLGTTLTGINFIATILRMRAPGMNLMKMPVFTWTALITNILIV AIFPVLTATLALLTADRYLDMHFFTNELGGNAMMYVNLIWIWGHPEVYVLILPCFGAFSEIIATFSRKPLFGYKSMVYAT SSIGVLSFFVWLHHFFTMGSGANVNAFFGIMTSIISIPTGVKLFNWLFTMYRGRIRFHSSTLWTIGFMVTFAIGGMTGVL LAVPGADFVLHNSLFLVAHFHNVIIGGVVFGCLAAMSFWFPKVFGFRLNEFWGKVSFWCWLIGFCLAFLPLYGLGMKGMT RRMNHYVNPEWQPWLIVAMIGALIIGAGILALLWQIYVSVRDREQNRDLTGDPWNARSLEWSTPSPAPHYNFAIVPNITS LEQHWDDKEAGRAWQAPARYEDIHMPRPTAAGFIVSMFGLVLCFGFVWHIWWLAGAGLAGMIATFIARSYDRDVDYYVPA EEVERTERARFEQMRQATL
Sequences:
>Translated_659_residues MFGKLTLAAIPTHEPIIMGTLVAVLLLGGALVGAITYYRKWSYLWTEWICSVDHKRIGVMYIIMALIMLLRGFADAIMMR TQQAIAVGEAAGYLPPHHYDQIFTAHGVIMIFFVATPFILGLMNVIVPLQIGARDVAFPFVNSLSFWMSAVGAVLVMMSM FVGDFAATGWVAYPPLSGLGYSPTVGVDYYIWSLQISGLGTTLTGINFIATILRMRAPGMNLMKMPVFTWTALITNILIV AIFPVLTATLALLTADRYLDMHFFTNELGGNAMMYVNLIWIWGHPEVYVLILPCFGAFSEIIATFSRKPLFGYKSMVYAT SSIGVLSFFVWLHHFFTMGSGANVNAFFGIMTSIISIPTGVKLFNWLFTMYRGRIRFHSSTLWTIGFMVTFAIGGMTGVL LAVPGADFVLHNSLFLVAHFHNVIIGGVVFGCLAAMSFWFPKVFGFRLNEFWGKVSFWCWLIGFCLAFLPLYGLGMKGMT RRMNHYVNPEWQPWLIVAMIGALIIGAGILALLWQIYVSVRDREQNRDLTGDPWNARSLEWSTPSPAPHYNFAIVPNITS LEQHWDDKEAGRAWQAPARYEDIHMPRPTAAGFIVSMFGLVLCFGFVWHIWWLAGAGLAGMIATFIARSYDRDVDYYVPA EEVERTERARFEQMRQATL >Mature_659_residues MFGKLTLAAIPTHEPIIMGTLVAVLLLGGALVGAITYYRKWSYLWTEWICSVDHKRIGVMYIIMALIMLLRGFADAIMMR TQQAIAVGEAAGYLPPHHYDQIFTAHGVIMIFFVATPFILGLMNVIVPLQIGARDVAFPFVNSLSFWMSAVGAVLVMMSM FVGDFAATGWVAYPPLSGLGYSPTVGVDYYIWSLQISGLGTTLTGINFIATILRMRAPGMNLMKMPVFTWTALITNILIV AIFPVLTATLALLTADRYLDMHFFTNELGGNAMMYVNLIWIWGHPEVYVLILPCFGAFSEIIATFSRKPLFGYKSMVYAT SSIGVLSFFVWLHHFFTMGSGANVNAFFGIMTSIISIPTGVKLFNWLFTMYRGRIRFHSSTLWTIGFMVTFAIGGMTGVL LAVPGADFVLHNSLFLVAHFHNVIIGGVVFGCLAAMSFWFPKVFGFRLNEFWGKVSFWCWLIGFCLAFLPLYGLGMKGMT RRMNHYVNPEWQPWLIVAMIGALIIGAGILALLWQIYVSVRDREQNRDLTGDPWNARSLEWSTPSPAPHYNFAIVPNITS LEQHWDDKEAGRAWQAPARYEDIHMPRPTAAGFIVSMFGLVLCFGFVWHIWWLAGAGLAGMIATFIARSYDRDVDYYVPA EEVERTERARFEQMRQATL
Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration. This ubiquinol oxidase shows proton pump activity across the membrane in addition to the electron transfer [H]
COG id: COG0843
COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 1
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the heme-copper respiratory oxidase family [H]
Homologues:
Organism=Homo sapiens, GI251831109, Length=509, Percent_Identity=38.1139489194499, Blast_Score=332, Evalue=5e-91, Organism=Escherichia coli, GI1786634, Length=659, Percent_Identity=67.3748103186646, Blast_Score=953, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6226519, Length=486, Percent_Identity=37.8600823045267, Blast_Score=331, Evalue=2e-91, Organism=Saccharomyces cerevisiae, GI6226524, Length=326, Percent_Identity=40.7975460122699, Blast_Score=239, Evalue=1e-63, Organism=Saccharomyces cerevisiae, GI6226523, Length=250, Percent_Identity=33.2, Blast_Score=130, Evalue=7e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000883 - InterPro: IPR014207 [H]
Pfam domain/function: PF00115 COX1 [H]
EC number: 1.10.3.-
Molecular weight: Translated: 73930; Mature: 73930
Theoretical pI: Translated: 8.34; Mature: 8.34
Prosite motif: PS50855 COX1 ; PS00077 COX1_CUB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 5.3 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFGKLTLAAIPTHEPIIMGTLVAVLLLGGALVGAITYYRKWSYLWTEWICSVDHKRIGVM CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH YIIMALIMLLRGFADAIMMRTQQAIAVGEAAGYLPPHHYDQIFTAHGVIMIFFVATPFIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH GLMNVIVPLQIGARDVAFPFVNSLSFWMSAVGAVLVMMSMFVGDFAATGWVAYPPLSGLG HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCC YSPTVGVDYYIWSLQISGLGTTLTGINFIATILRMRAPGMNLMKMPVFTWTALITNILIV CCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH AIFPVLTATLALLTADRYLDMHFFTNELGGNAMMYVNLIWIWGHPEVYVLILPCFGAFSE HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCEEEEEEEHHHHHHH IIATFSRKPLFGYKSMVYATSSIGVLSFFVWLHHFFTMGSGANVNAFFGIMTSIISIPTG HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH VKLFNWLFTMYRGRIRFHSSTLWTIGFMVTFAIGGMTGVLLAVPGADFVLHNSLFLVAHF HHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHCHHEEEEECCCCCCHHHCHHHHHHHH HNVIIGGVVFGCLAAMSFWFPKVFGFRLNEFWGKVSFWCWLIGFCLAFLPLYGLGMKGMT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH RRMNHYVNPEWQPWLIVAMIGALIIGAGILALLWQIYVSVRDREQNRDLTGDPWNARSLE HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC WSTPSPAPHYNFAIVPNITSLEQHWDDKEAGRAWQAPARYEDIHMPRPTAAGFIVSMFGL CCCCCCCCCCCEEECCCCHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH VLCFGFVWHIWWLAGAGLAGMIATFIARSYDRDVDYYVPAEEVERTERARFEQMRQATL HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MFGKLTLAAIPTHEPIIMGTLVAVLLLGGALVGAITYYRKWSYLWTEWICSVDHKRIGVM CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH YIIMALIMLLRGFADAIMMRTQQAIAVGEAAGYLPPHHYDQIFTAHGVIMIFFVATPFIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH GLMNVIVPLQIGARDVAFPFVNSLSFWMSAVGAVLVMMSMFVGDFAATGWVAYPPLSGLG HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCC YSPTVGVDYYIWSLQISGLGTTLTGINFIATILRMRAPGMNLMKMPVFTWTALITNILIV CCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH AIFPVLTATLALLTADRYLDMHFFTNELGGNAMMYVNLIWIWGHPEVYVLILPCFGAFSE HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCEEEEEEEHHHHHHH IIATFSRKPLFGYKSMVYATSSIGVLSFFVWLHHFFTMGSGANVNAFFGIMTSIISIPTG HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH VKLFNWLFTMYRGRIRFHSSTLWTIGFMVTFAIGGMTGVLLAVPGADFVLHNSLFLVAHF HHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHCHHEEEEECCCCCCHHHCHHHHHHHH HNVIIGGVVFGCLAAMSFWFPKVFGFRLNEFWGKVSFWCWLIGFCLAFLPLYGLGMKGMT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH RRMNHYVNPEWQPWLIVAMIGALIIGAGILALLWQIYVSVRDREQNRDLTGDPWNARSLE HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC WSTPSPAPHYNFAIVPNITSLEQHWDDKEAGRAWQAPARYEDIHMPRPTAAGFIVSMFGL CCCCCCCCCCCEEECCCCHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH VLCFGFVWHIWWLAGAGLAGMIATFIARSYDRDVDYYVPAEEVERTERARFEQMRQATL HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: Protoheme IX (Heme B55 and B562); Copper B. [C]
Metal ions: Fe; Cu [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Oxidoreductases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]