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The map label for this gene is nodB [H]

Identifier: 73537762

GI number: 73537762

Start: 559669

End: 560538

Strand: Reverse

Name: nodB [H]

Synonym: Reut_B3928

Alternate gene names: 73537762

Gene position: 560538-559669 (Counterclockwise)

Preceding gene: 73537763

Following gene: 73537761

Centisome position: 20.56

GC content: 68.85

Gene sequence:

>870_bases
ATGAAGACGTCTGACATGAACCCCACTGCGCAGCACGGGCCGATGCCGCCAGCGGCGCGCCGCTGGCGGCCCGGCATGCT
GCTGTACGGCGCGGGCGTGGTGCACGCAGGTGCCGCCGCGGCTGTGCTCGCCAATCCGGCCACACTCGGCCTGGCTGCAG
CGAGTGTCGGCGCCACGCATGCGGCGCTTGCTACAGTCGGACTGTGGCCGCGCAGCACGTGGCTCGGGCCGAACGTGCTG
CGGCTGCCAGCGAACGCCGGCAACAGCGTGGCGCTGACTTTCGATGACGGCCCGCACCCGGACATGACCCCGCGCGTGCT
CGACATGCTCGACCGTCATGGCGCGCGCGCCACGTTTTTCTGCATTGGCGAGCGCGCGGCGCGATATCCCGATCTCGTAC
GGGAGATCGCACGCCGCGGGCATACCGTGGAGAACCACAGCATGCATCACCGGCTCGATTTTTCGCTGTTCGGCCCCTGG
CGCATGCGTCGCGAGATCCGCGCGGCCCAGCAGTTGCTGACCGAGATCACGGGACAGCCACCGCGCTATTTCCGCGCGCC
GGCAGGACTGCGCAATCTGTTCCTCGAACCCGTGCTGTGCGCGGAGGGACTGCAGCTTGCCGCATGGACCCGGCGCGGCT
ACGACACGCGCAACGGCGACCATGCCGCGCGCGTCGCGCAGCGCCTCATGCGAAACCTGGCCGCTGGCGACATCCTGCTG
CTGCACGACGGCAATAGCGGTGTCGATACGGCCGGCAAACCGCACTGCACGACCGTGCTGCCCAAACTGCTTGCAACAAT
TACCGACGCGGGCCTGCGCTGCGTGACGCTGCGTGCCGGCATGGCGGCATGGGACTTGCATGCGGCTTGA

Upstream 100 bases:

>100_bases
GCATTCGGCCTGACAGTCGGTCCGGGCGCGGTGCTGGCGTTGTGCTTCTCGGCCATCCTGGCGCCCACGCCAGCCAACGC
TAGCGGTAGCAGCTGGAACG

Downstream 100 bases:

>100_bases
TACAATGGCCGCACCCCGCGTCTCCCACTCAACACATTCCGTGTCGCCGCTCCATCTTTCGCATTTCACTGCCACCAGTT
GCATCGGCACCGGGCTTGAC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MKTSDMNPTAQHGPMPPAARRWRPGMLLYGAGVVHAGAAAAVLANPATLGLAAASVGATHAALATVGLWPRSTWLGPNVL
RLPANAGNSVALTFDDGPHPDMTPRVLDMLDRHGARATFFCIGERAARYPDLVREIARRGHTVENHSMHHRLDFSLFGPW
RMRREIRAAQQLLTEITGQPPRYFRAPAGLRNLFLEPVLCAEGLQLAAWTRRGYDTRNGDHAARVAQRLMRNLAAGDILL
LHDGNSGVDTAGKPHCTTVLPKLLATITDAGLRCVTLRAGMAAWDLHAA

Sequences:

>Translated_289_residues
MKTSDMNPTAQHGPMPPAARRWRPGMLLYGAGVVHAGAAAAVLANPATLGLAAASVGATHAALATVGLWPRSTWLGPNVL
RLPANAGNSVALTFDDGPHPDMTPRVLDMLDRHGARATFFCIGERAARYPDLVREIARRGHTVENHSMHHRLDFSLFGPW
RMRREIRAAQQLLTEITGQPPRYFRAPAGLRNLFLEPVLCAEGLQLAAWTRRGYDTRNGDHAARVAQRLMRNLAAGDILL
LHDGNSGVDTAGKPHCTTVLPKLLATITDAGLRCVTLRAGMAAWDLHAA
>Mature_289_residues
MKTSDMNPTAQHGPMPPAARRWRPGMLLYGAGVVHAGAAAAVLANPATLGLAAASVGATHAALATVGLWPRSTWLGPNVL
RLPANAGNSVALTFDDGPHPDMTPRVLDMLDRHGARATFFCIGERAARYPDLVREIARRGHTVENHSMHHRLDFSLFGPW
RMRREIRAAQQLLTEITGQPPRYFRAPAGLRNLFLEPVLCAEGLQLAAWTRRGYDTRNGDHAARVAQRLMRNLAAGDILL
LHDGNSGVDTAGKPHCTTVLPKLLATITDAGLRCVTLRAGMAAWDLHAA

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 31233; Mature: 31233

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTSDMNPTAQHGPMPPAARRWRPGMLLYGAGVVHAGAAAAVLANPATLGLAAASVGATH
CCCCCCCCCHHCCCCCCHHHHCCCCEEEEECCHHHCCHHHHHHCCCHHHHHHHHHHCHHH
AALATVGLWPRSTWLGPNVLRLPANAGNSVALTFDDGPHPDMTPRVLDMLDRHGARATFF
HHHHHHCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEE
CIGERAARYPDLVREIARRGHTVENHSMHHRLDFSLFGPWRMRREIRAAQQLLTEITGQP
EECCHHHCCHHHHHHHHHCCCCCCCCCCCEEECEEEECHHHHHHHHHHHHHHHHHHCCCC
PRYFRAPAGLRNLFLEPVLCAEGLQLAAWTRRGYDTRNGDHAARVAQRLMRNLAAGDILL
CHHHCCCHHHHHHHHHHHHHHCCCEEEHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
LHDGNSGVDTAGKPHCTTVLPKLLATITDAGLRCVTLRAGMAAWDLHAA
EECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCCCC
>Mature Secondary Structure
MKTSDMNPTAQHGPMPPAARRWRPGMLLYGAGVVHAGAAAAVLANPATLGLAAASVGATH
CCCCCCCCCHHCCCCCCHHHHCCCCEEEEECCHHHCCHHHHHHCCCHHHHHHHHHHCHHH
AALATVGLWPRSTWLGPNVLRLPANAGNSVALTFDDGPHPDMTPRVLDMLDRHGARATFF
HHHHHHCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEE
CIGERAARYPDLVREIARRGHTVENHSMHHRLDFSLFGPWRMRREIRAAQQLLTEITGQP
EECCHHHCCHHHHHHHHHCCCCCCCCCCCEEECEEEECHHHHHHHHHHHHHHHHHHCCCC
PRYFRAPAGLRNLFLEPVLCAEGLQLAAWTRRGYDTRNGDHAARVAQRLMRNLAAGDILL
CHHHCCCHHHHHHHHHHHHHHCCCEEEHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
LHDGNSGVDTAGKPHCTTVLPKLLATITDAGLRCVTLRAGMAAWDLHAA
EECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 4006668; 6336331; 11481432 [H]