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The map label for this gene is virS [H]

Identifier: 73537735

GI number: 73537735

Start: 531118

End: 532218

Strand: Reverse

Name: virS [H]

Synonym: Reut_B3901

Alternate gene names: 73537735

Gene position: 532218-531118 (Counterclockwise)

Preceding gene: 73537737

Following gene: 73537734

Centisome position: 19.52

GC content: 63.49

Gene sequence:

>1101_bases
ATGAGTAGGACTACGGTTCTGCGCAGCGCGGAATCGGACCTCACGCTGCATGGACGAGACGCGATGGGCACGTTGATGCG
TACCGGGACGCTGACCAACTTTCTCAAGGTTGCGCAGCAACTGGACTTTGACCCTCAGCCGCTGCTGCGCAAGCTGGGGT
TGACCAAGGAAATGCTTGCCGACCCGGAATGCCTGATTCCCGGGAGTGCTTCCGTCACCTTGCTGAAAGAGTCGGCACGC
CTGACCCAATGCCCGACCTTCGGACTGCGCGTGGCCGAGCGCTGGCAGCTGTCCGACCTCGGCGTCATCAGCGTGCTGCT
CACGCACCAGAGCACCCTGCGCGACGCCGTTGGCACCCTGATCCAGTATCGGCACCTGCTGAACGAGTTCCTGGTCATCC
GCATGGAGGATGTCGGCAGAAAGGTGATCGTGCGCGAGGAACTCGTCGCGGATGAGGCCGGCACCTCCATACAGTCGACC
GAACTGGTGCTGGGCTCGCTGTCACGCCTGTGCAGCACGCTGATGGGCGCCACGTGGCACCCGCTGAGCGTCCATTTCAC
CCACGATCCGCCACCTGACCTGCGGCTGCACCGCCGCGTGTTCGGCGGCAAGCTGGAATTCGCCAGCTCGTTCAATGGCA
TGATCTGCCGCGCGGCGGACATGGATTTCCCCAACCCCATCGCCGACCCCGTCATGGCACGCCACGCGCGGCGCTTGCTC
GAGGGGCTGCCGGGTGCCAAAGAGCCGTCCATCGTGCTTGAAGTGCGAAAGGCCATCTATCTGTTGCTGCCCTTGGGGCG
AGCGACCATCGAGCAGGTAGCGCAGGGCCTTGGCATGAACGTGCGAATGCTGCAGCGCCAGCTCGAAAGCGCGGGGATGG
TGTTCTCGGACATGGTCAACGGCGTACGGCGCGATCTCGTCATCCACTACATGGACAACAAGAGCTACACGCTGGGGCGC
ATTGCCCAGTCGCTCGGATACTCGGCCTATGGCTCCTTCGTACGCTGGTTTGCCGCGCAGTTCGGCATGACGCCGACGCG
GTGGCAGAGCCTGCGCCAGCAAAAGGAAGACGGCCGGAGTCCGATCCAGATCCACTGTTGA

Upstream 100 bases:

>100_bases
CACTCCCGAATCCAGGAAGGCCGACAAGGCTGTAGTCTAGGAATCCCGAGCCTTCCTATCTCTCTCATTTGACGACATAG
GCATCTCATTTCATGACAAA

Downstream 100 bases:

>100_bases
CGCGACCCGCGCGTCTGGGTGATGAATTCTATACATCACTTTTTGACGCCTTATAGGCTCCCCGCCCTCTCCGGCCCCGA
CAAAGCCTCTGCTTTCCATC

Product: AraC type domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 365

Protein sequence:

>366_residues
MSRTTVLRSAESDLTLHGRDAMGTLMRTGTLTNFLKVAQQLDFDPQPLLRKLGLTKEMLADPECLIPGSASVTLLKESAR
LTQCPTFGLRVAERWQLSDLGVISVLLTHQSTLRDAVGTLIQYRHLLNEFLVIRMEDVGRKVIVREELVADEAGTSIQST
ELVLGSLSRLCSTLMGATWHPLSVHFTHDPPPDLRLHRRVFGGKLEFASSFNGMICRAADMDFPNPIADPVMARHARRLL
EGLPGAKEPSIVLEVRKAIYLLLPLGRATIEQVAQGLGMNVRMLQRQLESAGMVFSDMVNGVRRDLVIHYMDNKSYTLGR
IAQSLGYSAYGSFVRWFAAQFGMTPTRWQSLRQQKEDGRSPIQIHC

Sequences:

>Translated_366_residues
MSRTTVLRSAESDLTLHGRDAMGTLMRTGTLTNFLKVAQQLDFDPQPLLRKLGLTKEMLADPECLIPGSASVTLLKESAR
LTQCPTFGLRVAERWQLSDLGVISVLLTHQSTLRDAVGTLIQYRHLLNEFLVIRMEDVGRKVIVREELVADEAGTSIQST
ELVLGSLSRLCSTLMGATWHPLSVHFTHDPPPDLRLHRRVFGGKLEFASSFNGMICRAADMDFPNPIADPVMARHARRLL
EGLPGAKEPSIVLEVRKAIYLLLPLGRATIEQVAQGLGMNVRMLQRQLESAGMVFSDMVNGVRRDLVIHYMDNKSYTLGR
IAQSLGYSAYGSFVRWFAAQFGMTPTRWQSLRQQKEDGRSPIQIHC
>Mature_365_residues
SRTTVLRSAESDLTLHGRDAMGTLMRTGTLTNFLKVAQQLDFDPQPLLRKLGLTKEMLADPECLIPGSASVTLLKESARL
TQCPTFGLRVAERWQLSDLGVISVLLTHQSTLRDAVGTLIQYRHLLNEFLVIRMEDVGRKVIVREELVADEAGTSIQSTE
LVLGSLSRLCSTLMGATWHPLSVHFTHDPPPDLRLHRRVFGGKLEFASSFNGMICRAADMDFPNPIADPVMARHARRLLE
GLPGAKEPSIVLEVRKAIYLLLPLGRATIEQVAQGLGMNVRMLQRQLESAGMVFSDMVNGVRRDLVIHYMDNKSYTLGRI
AQSLGYSAYGSFVRWFAAQFGMTPTRWQSLRQQKEDGRSPIQIHC

Specific function: May have a role in the regulation of proteins necessary for virulence [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 40867; Mature: 40736

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRTTVLRSAESDLTLHGRDAMGTLMRTGTLTNFLKVAQQLDFDPQPLLRKLGLTKEMLA
CCCCHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHC
DPECLIPGSASVTLLKESARLTQCPTFGLRVAERWQLSDLGVISVLLTHQSTLRDAVGTL
CCCEECCCCCCEEEEHHCHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
IQYRHLLNEFLVIRMEDVGRKVIVREELVADEAGTSIQSTELVLGSLSRLCSTLMGATWH
HHHHHHHHHHHEEHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
PLSVHFTHDPPPDLRLHRRVFGGKLEFASSFNGMICRAADMDFPNPIADPVMARHARRLL
CEEEEECCCCCCCHHHHHHHHCCCEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
EGLPGAKEPSIVLEVRKAIYLLLPLGRATIEQVAQGLGMNVRMLQRQLESAGMVFSDMVN
HCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHH
GVRRDLVIHYMDNKSYTLGRIAQSLGYSAYGSFVRWFAAQFGMTPTRWQSLRQQKEDGRS
HHHHHHEEEEECCCCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
PIQIHC
CEEEEC
>Mature Secondary Structure 
SRTTVLRSAESDLTLHGRDAMGTLMRTGTLTNFLKVAQQLDFDPQPLLRKLGLTKEMLA
CCCHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHC
DPECLIPGSASVTLLKESARLTQCPTFGLRVAERWQLSDLGVISVLLTHQSTLRDAVGTL
CCCEECCCCCCEEEEHHCHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
IQYRHLLNEFLVIRMEDVGRKVIVREELVADEAGTSIQSTELVLGSLSRLCSTLMGATWH
HHHHHHHHHHHEEHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
PLSVHFTHDPPPDLRLHRRVFGGKLEFASSFNGMICRAADMDFPNPIADPVMARHARRLL
CEEEEECCCCCCCHHHHHHHHCCCEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
EGLPGAKEPSIVLEVRKAIYLLLPLGRATIEQVAQGLGMNVRMLQRQLESAGMVFSDMVN
HCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHH
GVRRDLVIHYMDNKSYTLGRIAQSLGYSAYGSFVRWFAAQFGMTPTRWQSLRQQKEDGRS
HHHHHHEEEEECCCCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
PIQIHC
CEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8472958; 9634230; 12218036 [H]