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The map label for this gene is yfdE [H]

Identifier: 73537542

GI number: 73537542

Start: 294569

End: 295786

Strand: Direct

Name: yfdE [H]

Synonym: Reut_B3707

Alternate gene names: 73537542

Gene position: 294569-295786 (Clockwise)

Preceding gene: 73537540

Following gene: 73537543

Centisome position: 10.81

GC content: 67.9

Gene sequence:

>1218_bases
ATGGCAAGCCGGCAAGACCTGCCCCTGGCAGGCATTCGGGTAGCGGAGTTTGGGCAGTTCATCGCAGCGCCAGGCGCGGC
CATGATGCTGGCCGACCTCGGCGCCGACGTGGTCAAGGTGGAAGCGCTGCGCGGCGACAGCGCGCGGCGTTTCGACGGCA
CCAGCGCGCAGAGTCCGATGTTCCTCGCGTACAACCGTGGCAAGCGCGGCATCGCGCTGGATCTGCGCAGCAGCGGTGGC
ATGGAGGCTGCGCGGCGGCTCGCGCTGGCCAGCGACGTGGTGCTGCACAACACGCGTCACGGCGTGATGGAAGCGCTGGG
GCTGGATGCCGCGACGTTGCGCGCTGAGAAACCCGAGCTGATCCATGCATCGATCAGCGGCTTCGGCACGCGCGGACCGT
CGCGCTCGCGGCCGGGGCTCGATATCGCCGCGCAGGCCGAAAGCGGCATGATGTCCGTGACCGGCGAAGCCGGCGGACAG
CCGCTGAAGGCGGGCTTTGCACTGATCGACGCGGCCACGGCACTGGCTGCGGCCAACGCGATTCTCGCTGCGCTGTTTCG
CCGCCTCCGCACCGGCAAGGGCGAAACCATCGAGACGTCGCTATTGCAGGTTGGCGTGCAACTGCAGGCGCAGTTGTGGG
CGGAGTTCCAATGCTCGGGCGCGCTGCCGGTGCGCAGCGGCAACAGCCAGCCCAAGGCCGCACCTGCGGCGGATGTCATC
GCAGTGGCCGATGGCCATGTGGTGCTGTCCGCGTATCTCGACGAACACTGGGCGCGCCTGTGCGAAGCGATCGGCAACCC
CGCGCTCGCGCAGGATCCGCGTTTCGCCAGCAATGCACTGCGTGTGCAGAACCGTCCGGCGCTGCTCGCGATCCTGCACG
ATGCGCTGCGCCATTTGAGCGGCGACGCTGCGCGTGCGCTGCTCGAACGCCATCAGGTCGTGGTCGGCGTGGTGCGGGAT
TACCACCAGGTCGGCGCCAGTTCCGATGTGCGCGCCAGCGGCATCCTGCGCGCGGTTGGCAATGGCGAAGGCGACCTGCT
CGAACTGCCAGGGCTGCCGTTCTCGATGGAGAGCCTGCAAGGGGATGGTATTCCCGCCGTGCCTCGGCTGGGCCAGCACA
CCACTGAAGTGCTGACCGAGCTTGGCTACGGTGCCACTGAAATTGATGAACTGGCCTGCGCCGGCGCCATTGGCTGCGAG
CAAGGAGTGACTGCATGA

Upstream 100 bases:

>100_bases
TACGCGGCAGCGATCCTGCCATCTGCCGCAAACGCCGCTGCTGCCGCATGATCCTTTCGCATCATCGCAACGCCGGGCAA
ACCGGCATGGAGTCCATGGC

Downstream 100 bases:

>100_bases
GTGAAGCGGCAATAACCTCACCGGTACTGCTGGAGCGCCATGCCGGCTGGACCGAGATCGTGTTGAACCGGCCCGAGCGC
CGCAATGCCATCGACATTGC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MASRQDLPLAGIRVAEFGQFIAAPGAAMMLADLGADVVKVEALRGDSARRFDGTSAQSPMFLAYNRGKRGIALDLRSSGG
MEAARRLALASDVVLHNTRHGVMEALGLDAATLRAEKPELIHASISGFGTRGPSRSRPGLDIAAQAESGMMSVTGEAGGQ
PLKAGFALIDAATALAAANAILAALFRRLRTGKGETIETSLLQVGVQLQAQLWAEFQCSGALPVRSGNSQPKAAPAADVI
AVADGHVVLSAYLDEHWARLCEAIGNPALAQDPRFASNALRVQNRPALLAILHDALRHLSGDAARALLERHQVVVGVVRD
YHQVGASSDVRASGILRAVGNGEGDLLELPGLPFSMESLQGDGIPAVPRLGQHTTEVLTELGYGATEIDELACAGAIGCE
QGVTA

Sequences:

>Translated_405_residues
MASRQDLPLAGIRVAEFGQFIAAPGAAMMLADLGADVVKVEALRGDSARRFDGTSAQSPMFLAYNRGKRGIALDLRSSGG
MEAARRLALASDVVLHNTRHGVMEALGLDAATLRAEKPELIHASISGFGTRGPSRSRPGLDIAAQAESGMMSVTGEAGGQ
PLKAGFALIDAATALAAANAILAALFRRLRTGKGETIETSLLQVGVQLQAQLWAEFQCSGALPVRSGNSQPKAAPAADVI
AVADGHVVLSAYLDEHWARLCEAIGNPALAQDPRFASNALRVQNRPALLAILHDALRHLSGDAARALLERHQVVVGVVRD
YHQVGASSDVRASGILRAVGNGEGDLLELPGLPFSMESLQGDGIPAVPRLGQHTTEVLTELGYGATEIDELACAGAIGCE
QGVTA
>Mature_404_residues
ASRQDLPLAGIRVAEFGQFIAAPGAAMMLADLGADVVKVEALRGDSARRFDGTSAQSPMFLAYNRGKRGIALDLRSSGGM
EAARRLALASDVVLHNTRHGVMEALGLDAATLRAEKPELIHASISGFGTRGPSRSRPGLDIAAQAESGMMSVTGEAGGQP
LKAGFALIDAATALAAANAILAALFRRLRTGKGETIETSLLQVGVQLQAQLWAEFQCSGALPVRSGNSQPKAAPAADVIA
VADGHVVLSAYLDEHWARLCEAIGNPALAQDPRFASNALRVQNRPALLAILHDALRHLSGDAARALLERHQVVVGVVRDY
HQVGASSDVRASGILRAVGNGEGDLLELPGLPFSMESLQGDGIPAVPRLGQHTTEVLTELGYGATEIDELACAGAIGCEQ
GVTA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=396, Percent_Identity=31.5656565656566, Blast_Score=191, Evalue=7e-49,
Organism=Homo sapiens, GI300863124, Length=422, Percent_Identity=31.7535545023697, Blast_Score=182, Evalue=6e-46,
Organism=Homo sapiens, GI13376042, Length=422, Percent_Identity=29.3838862559242, Blast_Score=150, Evalue=3e-36,
Organism=Homo sapiens, GI300863126, Length=396, Percent_Identity=28.030303030303, Blast_Score=139, Evalue=5e-33,
Organism=Homo sapiens, GI42794625, Length=392, Percent_Identity=30.1020408163265, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI266456254, Length=392, Percent_Identity=30.1020408163265, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI266458393, Length=285, Percent_Identity=33.6842105263158, Blast_Score=118, Evalue=9e-27,
Organism=Homo sapiens, GI266458397, Length=241, Percent_Identity=36.5145228215768, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI266458395, Length=143, Percent_Identity=39.8601398601399, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI42822893, Length=143, Percent_Identity=39.8601398601399, Blast_Score=81, Evalue=2e-15,
Organism=Escherichia coli, GI87082093, Length=314, Percent_Identity=32.8025477707006, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI1788717, Length=410, Percent_Identity=27.3170731707317, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1786222, Length=245, Percent_Identity=27.3469387755102, Blast_Score=78, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI32564160, Length=198, Percent_Identity=33.8383838383838, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI115535051, Length=323, Percent_Identity=26.3157894736842, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24648431, Length=396, Percent_Identity=36.6161616161616, Blast_Score=224, Evalue=7e-59,
Organism=Drosophila melanogaster, GI24585488, Length=198, Percent_Identity=33.3333333333333, Blast_Score=98, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42101; Mature: 41970

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASRQDLPLAGIRVAEFGQFIAAPGAAMMLADLGADVVKVEALRGDSARRFDGTSAQSPM
CCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCE
FLAYNRGKRGIALDLRSSGGMEAARRLALASDVVLHNTRHGVMEALGLDAATLRAEKPEL
EEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCCCCE
IHASISGFGTRGPSRSRPGLDIAAQAESGMMSVTGEAGGQPLKAGFALIDAATALAAANA
EEEECCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
ILAALFRRLRTGKGETIETSLLQVGVQLQAQLWAEFQCSGALPVRSGNSQPKAAPAADVI
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCEECCCCCCCCCCCCCCEE
AVADGHVVLSAYLDEHWARLCEAIGNPALAQDPRFASNALRVQNRPALLAILHDALRHLS
EEECCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHEECCCCHHHHHHHHHHHHCC
GDAARALLERHQVVVGVVRDYHQVGASSDVRASGILRAVGNGEGDLLELPGLPFSMESLQ
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHEECCCCCCCEEECCCCCCCHHHCC
GDGIPAVPRLGQHTTEVLTELGYGATEIDELACAGAIGCEQGVTA
CCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
ASRQDLPLAGIRVAEFGQFIAAPGAAMMLADLGADVVKVEALRGDSARRFDGTSAQSPM
CCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCE
FLAYNRGKRGIALDLRSSGGMEAARRLALASDVVLHNTRHGVMEALGLDAATLRAEKPEL
EEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCCCCE
IHASISGFGTRGPSRSRPGLDIAAQAESGMMSVTGEAGGQPLKAGFALIDAATALAAANA
EEEECCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
ILAALFRRLRTGKGETIETSLLQVGVQLQAQLWAEFQCSGALPVRSGNSQPKAAPAADVI
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCEECCCCCCCCCCCCCCEE
AVADGHVVLSAYLDEHWARLCEAIGNPALAQDPRFASNALRVQNRPALLAILHDALRHLS
EEECCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHEECCCCHHHHHHHHHHHHCC
GDAARALLERHQVVVGVVRDYHQVGASSDVRASGILRAVGNGEGDLLELPGLPFSMESLQ
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHEECCCCCCCEEECCCCCCCHHHCC
GDGIPAVPRLGQHTTEVLTELGYGATEIDELACAGAIGCEQGVTA
CCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]