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The map label for this gene is yagI [H]

Identifier: 73537408

GI number: 73537408

Start: 128602

End: 129459

Strand: Direct

Name: yagI [H]

Synonym: Reut_B3573

Alternate gene names: 73537408

Gene position: 128602-129459 (Clockwise)

Preceding gene: 73537407

Following gene: 73537409

Centisome position: 4.72

GC content: 68.41

Gene sequence:

>858_bases
ATGACCGCCCTGCAACCCGCCACCGCCACGCAAAGCACCGCCGAGTTCCCGGACAAGTACATCGTCCCGGGCCTCGAGCG
CGGCCTGCGCCTGCTCGGCGAGTTCAACAGCAAGGACCGCGCGATTTCCGCGGCCGAACTGGCGCGCCGCCTTCAGGTGC
CGCGCTCGACGGTGTTCCGCCTGCTGACCACGCTCGAAATGCTCGGCTTCGTCGAGCGTGCCGAGGGTGGCCGGGACTTC
CGCCTGGGCATGGCCGTGCTGCGGCTGGGCTTCGAATACCTGGCTTCGCTGGAGCTGACCGAACTGGGCCGCCCGCTGCT
GGAGCGCCTGCGCGACGAGATCGGCTATCCGTGCAACCTCGTGGTGCGCGACGGCCGCTCGATCGTGTACGTGGCCAAGG
CCGTGTCGCCGCGCCCGTTCGCGAGCACCGTGAACGTAGGCACCCGTCTGCCGGCGCACGCGACCGTACTTGGCCGCGTG
CTGCTCGAAGACCTGTCGCTCGACGAACTGCGCGCGCTGTATCCGGAGCCGCGGCTCGAGGCTTTCTCCGAGCGCACGCC
GGCCAGCGTGGACGCGCTGTACGAACTCGTGCAGCACGACCGCGAGCGCGGCTATGTGCTGCATGAAGGCTTCTTCGAGT
CGAGCATCTCCACCATCGCCGCGCCGGTGCGTGACCGCACCCGCAAGGTGGTGGCGGCGCTGGGCGCGACCATTCCGGCC
GCGCATATCGATCCCGCGCAGCTGGACTCCATGGTGGAAAAAGTCAGGGAAACCGCGGGCGAATTGTCGCGCCTGCTGGA
CTACCGGCCCGCGCTGAAAAGCAGCGGCGGCAAGGTAGTGAATCTGTATCGGGAGTGA

Upstream 100 bases:

>100_bases
CCCATCACCCCGACGTACCCGCCCGAGCATCCGCTCTCGAAGATCAAGCGCTGATGCCTGCGCCCAACCGCACACTGCGC
CATCACCAGGTACCCAGGCC

Downstream 100 bases:

>100_bases
GGACAATGTCCATGATTGAACTCGACGGCAAGGTTGCCGTCGTCACAGGCGGGTCCTCCGGCATCGGGCTGGCGACCGTC
GAACTGCTGCTCGAAGCGGG

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MTALQPATATQSTAEFPDKYIVPGLERGLRLLGEFNSKDRAISAAELARRLQVPRSTVFRLLTTLEMLGFVERAEGGRDF
RLGMAVLRLGFEYLASLELTELGRPLLERLRDEIGYPCNLVVRDGRSIVYVAKAVSPRPFASTVNVGTRLPAHATVLGRV
LLEDLSLDELRALYPEPRLEAFSERTPASVDALYELVQHDRERGYVLHEGFFESSISTIAAPVRDRTRKVVAALGATIPA
AHIDPAQLDSMVEKVRETAGELSRLLDYRPALKSSGGKVVNLYRE

Sequences:

>Translated_285_residues
MTALQPATATQSTAEFPDKYIVPGLERGLRLLGEFNSKDRAISAAELARRLQVPRSTVFRLLTTLEMLGFVERAEGGRDF
RLGMAVLRLGFEYLASLELTELGRPLLERLRDEIGYPCNLVVRDGRSIVYVAKAVSPRPFASTVNVGTRLPAHATVLGRV
LLEDLSLDELRALYPEPRLEAFSERTPASVDALYELVQHDRERGYVLHEGFFESSISTIAAPVRDRTRKVVAALGATIPA
AHIDPAQLDSMVEKVRETAGELSRLLDYRPALKSSGGKVVNLYRE
>Mature_284_residues
TALQPATATQSTAEFPDKYIVPGLERGLRLLGEFNSKDRAISAAELARRLQVPRSTVFRLLTTLEMLGFVERAEGGRDFR
LGMAVLRLGFEYLASLELTELGRPLLERLRDEIGYPCNLVVRDGRSIVYVAKAVSPRPFASTVNVGTRLPAHATVLGRVL
LEDLSLDELRALYPEPRLEAFSERTPASVDALYELVQHDRERGYVLHEGFFESSISTIAAPVRDRTRKVVAALGATIPAA
HIDPAQLDSMVEKVRETAGELSRLLDYRPALKSSGGKVVNLYRE

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=248, Percent_Identity=29.4354838709677, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1786715, Length=245, Percent_Identity=26.530612244898, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082359, Length=241, Percent_Identity=27.8008298755187, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788131, Length=240, Percent_Identity=28.3333333333333, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1789999, Length=247, Percent_Identity=23.0769230769231, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788581, Length=257, Percent_Identity=24.9027237354086, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790752, Length=228, Percent_Identity=25, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 31575; Mature: 31444

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALQPATATQSTAEFPDKYIVPGLERGLRLLGEFNSKDRAISAAELARRLQVPRSTVFR
CCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH
LLTTLEMLGFVERAEGGRDFRLGMAVLRLGFEYLASLELTELGRPLLERLRDEIGYPCNL
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEE
VVRDGRSIVYVAKAVSPRPFASTVNVGTRLPAHATVLGRVLLEDLSLDELRALYPEPRLE
EEECCCEEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCHHHH
AFSERTPASVDALYELVQHDRERGYVLHEGFFESSISTIAAPVRDRTRKVVAALGATIPA
HHHCCCCHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
AHIDPAQLDSMVEKVRETAGELSRLLDYRPALKSSGGKVVNLYRE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
>Mature Secondary Structure 
TALQPATATQSTAEFPDKYIVPGLERGLRLLGEFNSKDRAISAAELARRLQVPRSTVFR
CCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH
LLTTLEMLGFVERAEGGRDFRLGMAVLRLGFEYLASLELTELGRPLLERLRDEIGYPCNL
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEE
VVRDGRSIVYVAKAVSPRPFASTVNVGTRLPAHATVLGRVLLEDLSLDELRALYPEPRLE
EEECCCEEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCHHHH
AFSERTPASVDALYELVQHDRERGYVLHEGFFESSISTIAAPVRDRTRKVVAALGATIPA
HHHCCCCHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
AHIDPAQLDSMVEKVRETAGELSRLLDYRPALKSSGGKVVNLYRE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]