Click here to switch to the map view.

The map label for this gene is oppB [H]

Identifier: 71893852

GI number: 71893852

Start: 643376

End: 644410

Strand: Reverse

Name: oppB [H]

Synonym: MHJ_0501

Alternate gene names: 71893852

Gene position: 644410-643376 (Counterclockwise)

Preceding gene: 71893853

Following gene: 71893851

Centisome position: 71.81

GC content: 33.14

Gene sequence:

>1035_bases
CTGAAATACTTTTTTAAACGGCTTTTACTTGCTTTGATTACATTTTTAGCAATTTATATAATTGTTTTTGTCTTACTTGC
TAATTTTTCTCCTGATCCTTTTGGTGATTTAGTTGAAAAAGGATCAAAAGTAGCCGATCAAGGGAAAAAACTTGCTGATT
TACGGGCAAAATACCATTTTGATCAATCAACTTTAGCCCGACTTTGATTTTATACAGCAGAAGTTTTTAAAGGAAATTTT
GGCCCGATTTATAAAACCGGTGAAGATGGTCAAATTCCTAGTTTGTTTTTTGGCCCTTTACGTTATACAATTTTAGTTTC
TCTTCCATCTTTTTTAATTAGTGCTTTTCTAGGAGTTATTCTTGGAACAGTTGCTGCTTATCGCCGCGATCGGATCGAAG
ATGCAGCAATTAGTGGGATCTCAACTTTTTTTGTAGCAATTCCTTCGTTTGTTTTAGCTCCTTTTGTAGTTTTAATTGCA
ATTAAAATTGGTCTTCCTTTTGAATTCAAAGACCCTTCAACTTATGGGATCTCAACTGCACTAGCCTCGCTGATTCCGCC
GATTTTTGTCTTTTCGATTACCTCAGTTGCAGGTTATGTTTTTCTTGTTCGAAATCAGGTAATTACCGTTTTATCTTCTG
AATATATTTTAATTGCCAAAGCAAAAGGGCTATCAAAAATGGACATATTTTTTAAATATGTCCTTAAAAATGCAGCAATT
CCACTTGTAAGATCGCTAATTTTTTCTTATATAATTCTCCTTTCGGGATCAATTGTTTTAGAACAATTTTTTAGAATTCC
GGGGTCTTCAAGTATTTTAGTAAGCGCGGCTTTTGATGGCGAGGTTAATATTTCGATGTTTTCAATTATTTTCTTTACCT
CGCTTTCTTTAATCGTTGATATCATCGGCGATCTTGTCTATCTTTTCATGGATCCACGAATTAGTTTTGGGAATAAATCA
CCAATAAGTCTATGAGAAAAAATTAAAAATTGGAAAATCAGAAATTATCCAAGAAAGGAGAAAAATAATGCCTAG

Upstream 100 bases:

>100_bases
ACGATACTTATGATGCATTTACACCCCCAGATATGATTGTCATTAAACCTTTAAAAGAAAAATGGGAAAAAAATAATAAA
AAAGGAGAAAAATAATGGCG

Downstream 100 bases:

>100_bases
TTCAAAAGAATTTAGCCAGCGCTATAATCTAACAAAAGAGCAAATTAGTCTTTTAAAACCTGCAAGTTTTTCTGAGAAAA
ACTATATTTCAACCGGAAGA

Product: oligopeptide ABC transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MKYFFKRLLLALITFLAIYIIVFVLLANFSPDPFGDLVEKGSKVADQGKKLADLRAKYHFDQSTLARLWFYTAEVFKGNF
GPIYKTGEDGQIPSLFFGPLRYTILVSLPSFLISAFLGVILGTVAAYRRDRIEDAAISGISTFFVAIPSFVLAPFVVLIA
IKIGLPFEFKDPSTYGISTALASLIPPIFVFSITSVAGYVFLVRNQVITVLSSEYILIAKAKGLSKMDIFFKYVLKNAAI
PLVRSLIFSYIILLSGSIVLEQFFRIPGSSSILVSAAFDGEVNISMFSIIFFTSLSLIVDIIGDLVYLFMDPRISFGNKS
PISLWEKIKNWKIRNYPRKEKNNA

Sequences:

>Translated_344_residues
MKYFFKRLLLALITFLAIYIIVFVLLANFSPDPFGDLVEKGSKVADQGKKLADLRAKYHFDQSTLARL*FYTAEVFKGNF
GPIYKTGEDGQIPSLFFGPLRYTILVSLPSFLISAFLGVILGTVAAYRRDRIEDAAISGISTFFVAIPSFVLAPFVVLIA
IKIGLPFEFKDPSTYGISTALASLIPPIFVFSITSVAGYVFLVRNQVITVLSSEYILIAKAKGLSKMDIFFKYVLKNAAI
PLVRSLIFSYIILLSGSIVLEQFFRIPGSSSILVSAAFDGEVNISMFSIIFFTSLSLIVDIIGDLVYLFMDPRISFGNKS
PISL*EKIKNWKIRNYPRKEKNNA
>Mature_344_residues
MKYFFKRLLLALITFLAIYIIVFVLLANFSPDPFGDLVEKGSKVADQGKKLADLRAKYHFDQSTLARL*FYTAEVFKGNF
GPIYKTGEDGQIPSLFFGPLRYTILVSLPSFLISAFLGVILGTVAAYRRDRIEDAAISGISTFFVAIPSFVLAPFVVLIA
IKIGLPFEFKDPSTYGISTALASLIPPIFVFSITSVAGYVFLVRNQVITVLSSEYILIAKAKGLSKMDIFFKYVLKNAAI
PLVRSLIFSYIILLSGSIVLEQFFRIPGSSSILVSAAFDGEVNISMFSIIFFTSLSLIVDIIGDLVYLFMDPRISFGNKS
PISL*EKIKNWKIRNYPRKEKNNA

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=317, Percent_Identity=26.4984227129338, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1789965, Length=341, Percent_Identity=23.1671554252199, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787053, Length=320, Percent_Identity=25.3125, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1789888, Length=316, Percent_Identity=24.6835443037975, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=22.3443223443223, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788504, Length=149, Percent_Identity=24.8322147651007, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 38024; Mature: 38024

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYFFKRLLLALITFLAIYIIVFVLLANFSPDPFGDLVEKGSKVADQGKKLADLRAKYHF
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCC
DQSTLARLFYTAEVFKGNFGPIYKTGEDGQIPSLFFGPLRYTILVSLPSFLISAFLGVIL
CHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GTVAAYRRDRIEDAAISGISTFFVAIPSFVLAPFVVLIAIKIGLPFEFKDPSTYGISTAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHH
ASLIPPIFVFSITSVAGYVFLVRNQVITVLSSEYILIAKAKGLSKMDIFFKYVLKNAAIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCHHH
LVRSLIFSYIILLSGSIVLEQFFRIPGSSSILVSAAFDGEVNISMFSIIFFTSLSLIVDI
HHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
IGDLVYLFMDPRISFGNKSPISLEKIKNWKIRNYPRKEKNNA
HHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKYFFKRLLLALITFLAIYIIVFVLLANFSPDPFGDLVEKGSKVADQGKKLADLRAKYHF
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCC
DQSTLARLFYTAEVFKGNFGPIYKTGEDGQIPSLFFGPLRYTILVSLPSFLISAFLGVIL
CHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GTVAAYRRDRIEDAAISGISTFFVAIPSFVLAPFVVLIAIKIGLPFEFKDPSTYGISTAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHH
ASLIPPIFVFSITSVAGYVFLVRNQVITVLSSEYILIAKAKGLSKMDIFFKYVLKNAAIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCHHH
LVRSLIFSYIILLSGSIVLEQFFRIPGSSSILVSAAFDGEVNISMFSIIFFTSLSLIVDI
HHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
IGDLVYLFMDPRISFGNKSPISLEKIKNWKIRNYPRKEKNNA
HHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7569993 [H]