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The map label for this gene is rpsF [H]

Identifier: 71893643

GI number: 71893643

Start: 341290

End: 342015

Strand: Reverse

Name: rpsF [H]

Synonym: MHJ_0287

Alternate gene names: 71893643

Gene position: 342015-341290 (Counterclockwise)

Preceding gene: 71893644

Following gene: 71893642

Centisome position: 38.11

GC content: 31.27

Gene sequence:

>726_bases
ATGCCTAAATACGAAATTATGACAATTTTAGATCCAAAAGCAGAAATGGCAATTATTGATAATTTGCTTAAAACTGTTTT
TGGTGATAATTCAACAGAAAAATTACGTAAACTTGAAACAACAAATCTTGCTTACTCGATAAGAAAATCAAAAATTGCGC
AATACTTTTTAGTAGATTTAAATGCTCCAACTAATTTAATCGAGGAATTTGTACGTCGGGCAAATATCACAAGAGAAATT
TGGCGATATCTAATTGTGAATCTTGATAGTGAAAAAGGTCTAAATAAAAAACCAAAAATTCGTGAGCGGAACAGAAAATA
CACACTTAGACGTGATCGTTTTGATAAGCCAAATTTTCGGGGAAATCCTAAATCACGTTTTGATCAACAAGACCAACAAG
CAACAAAAAATCAACAGAATTTTCAGCAAAATCAGCAAAATCAAGCTAGTCAATATCGAGAAAATAGCAGGCAAAATCAA
GATGATTTCCAACAAGTGAGCAGCAATCAACAGAATTTCGGGCAAAATCAACAAAATCAAAGCGGTTATCATCGTGAGAA
TAACCGACATAATCAAGAAAATATGCACCAAAATAACAAAAATCACCAAAATCAAACTAGTCAAACTCAGCGAAATCGCC
GACAATATCAACCCATAAAAAATCCAAAATTTAATCAAAAAGAAAAAGAAAACTACAATAATAAAAAACCACAAAGTTCA
AACTAA

Upstream 100 bases:

>100_bases
TGTATACAAATTTAAAAAAATTGTAAACTAGAAATTTTAAAACTTTTTAATTATTATCCTTGGTTAGTTTTTCTAACCCT
TAAGTCCAAAAGGAGAAAAA

Downstream 100 bases:

>100_bases
AATTATTATTAACAACGATGAACAAAGTTATTTTAATTGGTAGGGTTTCTTCAAGACCGATTTTGTTAAATACAAAATCT
AATGTACCGTTTTTGCGGTT

Product: 30S ribosomal protein S6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MPKYEIMTILDPKAEMAIIDNLLKTVFGDNSTEKLRKLETTNLAYSIRKSKIAQYFLVDLNAPTNLIEEFVRRANITREI
WRYLIVNLDSEKGLNKKPKIRERNRKYTLRRDRFDKPNFRGNPKSRFDQQDQQATKNQQNFQQNQQNQASQYRENSRQNQ
DDFQQVSSNQQNFGQNQQNQSGYHRENNRHNQENMHQNNKNHQNQTSQTQRNRRQYQPIKNPKFNQKEKENYNNKKPQSS
N

Sequences:

>Translated_241_residues
MPKYEIMTILDPKAEMAIIDNLLKTVFGDNSTEKLRKLETTNLAYSIRKSKIAQYFLVDLNAPTNLIEEFVRRANITREI
WRYLIVNLDSEKGLNKKPKIRERNRKYTLRRDRFDKPNFRGNPKSRFDQQDQQATKNQQNFQQNQQNQASQYRENSRQNQ
DDFQQVSSNQQNFGQNQQNQSGYHRENNRHNQENMHQNNKNHQNQTSQTQRNRRQYQPIKNPKFNQKEKENYNNKKPQSS
N
>Mature_240_residues
PKYEIMTILDPKAEMAIIDNLLKTVFGDNSTEKLRKLETTNLAYSIRKSKIAQYFLVDLNAPTNLIEEFVRRANITREIW
RYLIVNLDSEKGLNKKPKIRERNRKYTLRRDRFDKPNFRGNPKSRFDQQDQQATKNQQNFQQNQQNQASQYRENSRQNQD
DFQQVSSNQQNFGQNQQNQSGYHRENNRHNQENMHQNNKNHQNQTSQTQRNRRQYQPIKNPKFNQKEKENYNNKKPQSSN

Specific function: Binds together with S18 to 16S ribosomal RNA [H]

COG id: COG0360

COG function: function code J; Ribosomal protein S6

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000529
- InterPro:   IPR020814
- InterPro:   IPR014717 [H]

Pfam domain/function: PF01250 Ribosomal_S6 [H]

EC number: NA

Molecular weight: Translated: 29025; Mature: 28893

Theoretical pI: Translated: 10.68; Mature: 10.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKYEIMTILDPKAEMAIIDNLLKTVFGDNSTEKLRKLETTNLAYSIRKSKIAQYFLVDL
CCCCEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
NAPTNLIEEFVRRANITREIWRYLIVNLDSEKGLNKKPKIRERNRKYTLRRDRFDKPNFR
CCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHCCCCCCCC
GNPKSRFDQQDQQATKNQQNFQQNQQNQASQYRENSRQNQDDFQQVSSNQQNFGQNQQNQ
CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCCCCCC
SGYHRENNRHNQENMHQNNKNHQNQTSQTQRNRRQYQPIKNPKFNQKEKENYNNKKPQSS
CCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCC
N
C
>Mature Secondary Structure 
PKYEIMTILDPKAEMAIIDNLLKTVFGDNSTEKLRKLETTNLAYSIRKSKIAQYFLVDL
CCCEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
NAPTNLIEEFVRRANITREIWRYLIVNLDSEKGLNKKPKIRERNRKYTLRRDRFDKPNFR
CCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHCCCCCCCC
GNPKSRFDQQDQQATKNQQNFQQNQQNQASQYRENSRQNQDDFQQVSSNQQNFGQNQQNQ
CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCCCCCC
SGYHRENNRHNQENMHQNNKNHQNQTSQTQRNRRQYQPIKNPKFNQKEKENYNNKKPQSS
CCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCC
N
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA