Click here to switch to the map view.

The map label for this gene is secY [H]

Identifier: 71893527

GI number: 71893527

Start: 201928

End: 203349

Strand: Reverse

Name: secY [H]

Synonym: MHJ_0171

Alternate gene names: 71893527

Gene position: 203349-201928 (Counterclockwise)

Preceding gene: 71893528

Following gene: 71893526

Centisome position: 22.66

GC content: 34.25

Gene sequence:

>1422_bases
GTGCTAAAATTATTGGCTAAGGTTTGACTTGGAATAAATTCTGCCTATGTTAGTCTGAAAAATCGAGCCTATTTTGCCTA
TAGGGAAAAAATTTTAGCCCGCAAATTAATTTTTACATTTTTTTTACTTGTAATTTTTATAGTTTGTGGTACAATTACTA
TCCCAGGGTTGAAATTGCTACAGTTTCAACTTGATTCTAATTCCTTTTTAGGAATTATAAATACCGTCGGCGGTGGCGGG
TTGCTGAATTTTTCAGTAGTTGCTCTTGGAATTAGCCCGTTCATTACGGCATCTTTATTTATGCTAATTGCCCAGACAAA
ATTATTCCCTCCAATCCATCGGCTATCACAATCAGGCCCTGCAGGTAGAAGAAAAATTAACATAATAACGCGATTTCTTA
CCTTGTTAGTGGCAGTTATCCAGGCTGTTGTGCTAATACGAACAGTCATTCTTAATCCTGATTATGGGTTTGTTCGCCTC
GAAATTAATACACCAGTTTTTATCTGGTTGGTTTTGCCGCTTGTTTTAGTAGCAGGTTCACTTTTTTCTTTATTTCTTGC
CGAACAAATTACGGATAAAGGCGTTGGAAATGGTACTTCGTTACTAATTTTTTCTGGAATTGTAGTGGGTCTACCTCGTC
GTTTTCAACACGCTTTTGAGTATCTTGTCGATCTTAGTTTCTCCTCTTCGCTAATTTCTCAGGTTTTAAGTTTTATTCTT
TATATTTTTGGATTTTTACTTATTTTATTAATTGCGATTTATGTGTATTTAGCTGAAAGAAAAATTCCAATTCAACAAAC
CGGATCAGGTATGTCAAAAAATATTAAGGAAATTTCAATCCTACCCCTTAAATTAAATCCTGCTGGAATTATGCCTGTAA
TTTTTGCCTTAATTATCGTTTCACTGCCGACACTTTTTAGCGGATTTCTTGATAGAAATACCTCAGCAGTTCGGAATTGA
ATAGATAATAATATGCAAATTTATCACCCAATCGGTCTTATCATTTTTATTGTTTTTAATGTCTCCTTTTCAATAATAAT
GTCCTTACAACAATCCCGAGTTGATAAAATTGCACAGGATTTTGCCAAAAATTCAACTTTTATCCCTGGGATTCGCCCAG
GAGAACAGACTGAAGATTATTTAATTTCAGTGGTTTTGCGACTTTCAGTTTTCAGTGCGATTTATCTTACCTTTTTAGGA
ATTCTCCAACCTGTTGAAATTATGTTAGGTCTTCCTTCGGCAATCACAATTTCAGGAACTTCGATAATAATTTTAGCAAC
AACTACACTTGAAACGATTTCGCAGATCAAAGCCCGTTATGATGCACAAAAAGTTCTAAAACAAAGTAAAAAGATCCGCA
AAAATTTACAAGTTCGAAAAAATTCTCCTTCTATTGATTCAAATCAGGATCTTTTATGGTAA

Upstream 100 bases:

>100_bases
ACGGGGATCTAACTAAAAAGTTAACAGTTACCACGAATGCTTTTTCAATAGCCGCGCAGAAAAAAATCGAAGAAAAGGGT
GGAAAAATCGAGGTTCGCTA

Downstream 100 bases:

>100_bases
AATTTAATTTTTAACATTTTTGATTAAAAGAAGGCAAACTTAAAAATGAAAAGCAATAAAAAAATTCTTTTTATAGGAGC
TCCTGGCTCAGGTAAAGGAA

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 473

Protein sequence:

>473_residues
MLKLLAKVWLGINSAYVSLKNRAYFAYREKILARKLIFTFFLLVIFIVCGTITIPGLKLLQFQLDSNSFLGIINTVGGGG
LLNFSVVALGISPFITASLFMLIAQTKLFPPIHRLSQSGPAGRRKINIITRFLTLLVAVIQAVVLIRTVILNPDYGFVRL
EINTPVFIWLVLPLVLVAGSLFSLFLAEQITDKGVGNGTSLLIFSGIVVGLPRRFQHAFEYLVDLSFSSSLISQVLSFIL
YIFGFLLILLIAIYVYLAERKIPIQQTGSGMSKNIKEISILPLKLNPAGIMPVIFALIIVSLPTLFSGFLDRNTSAVRNW
IDNNMQIYHPIGLIIFIVFNVSFSIIMSLQQSRVDKIAQDFAKNSTFIPGIRPGEQTEDYLISVVLRLSVFSAIYLTFLG
ILQPVEIMLGLPSAITISGTSIIILATTTLETISQIKARYDAQKVLKQSKKIRKNLQVRKNSPSIDSNQDLLW

Sequences:

>Translated_473_residues
MLKLLAKV*LGINSAYVSLKNRAYFAYREKILARKLIFTFFLLVIFIVCGTITIPGLKLLQFQLDSNSFLGIINTVGGGG
LLNFSVVALGISPFITASLFMLIAQTKLFPPIHRLSQSGPAGRRKINIITRFLTLLVAVIQAVVLIRTVILNPDYGFVRL
EINTPVFIWLVLPLVLVAGSLFSLFLAEQITDKGVGNGTSLLIFSGIVVGLPRRFQHAFEYLVDLSFSSSLISQVLSFIL
YIFGFLLILLIAIYVYLAERKIPIQQTGSGMSKNIKEISILPLKLNPAGIMPVIFALIIVSLPTLFSGFLDRNTSAVRN*
IDNNMQIYHPIGLIIFIVFNVSFSIIMSLQQSRVDKIAQDFAKNSTFIPGIRPGEQTEDYLISVVLRLSVFSAIYLTFLG
ILQPVEIMLGLPSAITISGTSIIILATTTLETISQIKARYDAQKVLKQSKKIRKNLQVRKNSPSIDSNQDLLW
>Mature_473_residues
MLKLLAKV*LGINSAYVSLKNRAYFAYREKILARKLIFTFFLLVIFIVCGTITIPGLKLLQFQLDSNSFLGIINTVGGGG
LLNFSVVALGISPFITASLFMLIAQTKLFPPIHRLSQSGPAGRRKINIITRFLTLLVAVIQAVVLIRTVILNPDYGFVRL
EINTPVFIWLVLPLVLVAGSLFSLFLAEQITDKGVGNGTSLLIFSGIVVGLPRRFQHAFEYLVDLSFSSSLISQVLSFIL
YIFGFLLILLIAIYVYLAERKIPIQQTGSGMSKNIKEISILPLKLNPAGIMPVIFALIIVSLPTLFSGFLDRNTSAVRN*
IDNNMQIYHPIGLIIFIVFNVSFSIIMSLQQSRVDKIAQDFAKNSTFIPGIRPGEQTEDYLISVVLRLSVFSAIYLTFLG
ILQPVEIMLGLPSAITISGTSIIILATTTLETISQIKARYDAQKVLKQSKKIRKNLQVRKNSPSIDSNQDLLW

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=415, Percent_Identity=28.433734939759, Blast_Score=137, Evalue=1e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 52153; Mature: 52153

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLLAKVLGINSAYVSLKNRAYFAYREKILARKLIFTFFLLVIFIVCGTITIPGLKLLQ
CHHHHHHHHCCCHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
FQLDSNSFLGIINTVGGGGLLNFSVVALGISPFITASLFMLIAQTKLFPPIHRLSQSGPA
EEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
GRRKINIITRFLTLLVAVIQAVVLIRTVILNPDYGFVRLEINTPVFIWLVLPLVLVAGSL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
FSLFLAEQITDKGVGNGTSLLIFSGIVVGLPRRFQHAFEYLVDLSFSSSLISQVLSFILY
HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
IFGFLLILLIAIYVYLAERKIPIQQTGSGMSKNIKEISILPLKLNPAGIMPVIFALIIVS
HHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHH
LPTLFSGFLDRNTSAVRNIDNNMQIYHPIGLIIFIVFNVSFSIIMSLQQSRVDKIAQDFA
HHHHHHHHHCCCCHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNSTFIPGIRPGEQTEDYLISVVLRLSVFSAIYLTFLGILQPVEIMLGLPSAITISGTSI
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEE
IILATTTLETISQIKARYDAQKVLKQSKKIRKNLQVRKNSPSIDSNQDLLW
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLKLLAKVLGINSAYVSLKNRAYFAYREKILARKLIFTFFLLVIFIVCGTITIPGLKLLQ
CHHHHHHHHCCCHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
FQLDSNSFLGIINTVGGGGLLNFSVVALGISPFITASLFMLIAQTKLFPPIHRLSQSGPA
EEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
GRRKINIITRFLTLLVAVIQAVVLIRTVILNPDYGFVRLEINTPVFIWLVLPLVLVAGSL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
FSLFLAEQITDKGVGNGTSLLIFSGIVVGLPRRFQHAFEYLVDLSFSSSLISQVLSFILY
HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
IFGFLLILLIAIYVYLAERKIPIQQTGSGMSKNIKEISILPLKLNPAGIMPVIFALIIVS
HHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHH
LPTLFSGFLDRNTSAVRNIDNNMQIYHPIGLIIFIVFNVSFSIIMSLQQSRVDKIAQDFA
HHHHHHHHHCCCCHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNSTFIPGIRPGEQTEDYLISVVLRLSVFSAIYLTFLGILQPVEIMLGLPSAITISGTSI
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEE
IILATTTLETISQIKARYDAQKVLKQSKKIRKNLQVRKNSPSIDSNQDLLW
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3481422 [H]