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The map label for this gene is udp [H]

Identifier: 71892392

GI number: 71892392

Start: 780488

End: 781285

Strand: Reverse

Name: udp [H]

Synonym: BPEN_651

Alternate gene names: 71892392

Gene position: 781285-780488 (Counterclockwise)

Preceding gene: 71892393

Following gene: 71892391

Centisome position: 98.69

GC content: 35.96

Gene sequence:

>798_bases
ATGACTACAACTCATTCATTTCATTTAGGTTTAAAGATCGGGGACCTTCAAGGGGCAACTTTAGCTATTCTTCCAGGAGA
TCCTAATAGAGTTAAAAAAATAGCTTCTCTGATGGATGGAGCGAAATACATTTTTAGTAATCGAGAATTTACAACTTGGT
CCGCAAAAATCAATAAAGAGACAGTAATTGTTTGTTCTACAGGTATAGGCGGTCCATCTACTTCTATTGTAGTAGAAGAG
TTATCTCAATTAGGAATACGTACATTTTTACGTGTAGGCACCTCAGGAGCTATCCAAAAATATATAAAAATAGGCGATGT
GTTGATTATCACTGCTGCTGTTCGCTGTGATGGAGCAAGTCAACATTTTGCTCCATTAGAATTTCCAGCAGTAGCAGATT
TATCATGTACTATAGCTTTAATTCAAGCAGCTAAAAACATTGGTATTAAATCACATTTCGGTGTAACCGTATCTTCAGAT
ACATTTTATCCTGGACAAGAAAGACAAGATACATATTCTGGGCGAGTTATTCAAAAATTGCGCGGGTCCATGGAAGAATG
GAAAAACCTGGGAGTTATGAGTTATGAAATGGAATCTGCAACACTACTAACTATGTGTTTAAGTCAAGGATTACGAGCAG
GAGTTGTTACAGGCGTTATTGTAAATCGCACACAAAAAGAAATTCCAAACGTTACTTTAATACATCATACTGAATATATG
GCAATGAAAGTTGCAATAGAAGGCGCTCATATTATTCTGAGCAAAAGCAATACTTTTTTACACCGTTATGCAGAATAA

Upstream 100 bases:

>100_bases
ATTGATATTTTTTATGAATAAAAAATAAAGAATTTGGAAAAGTTTCCCACGAATCTTAAACATTCTTAATAACTTTTAAG
AAACACGCAATAGTTAGATT

Downstream 100 bases:

>100_bases
TATTAATCATTATTTTTTAAATCTTTTTATTCATTTCAATAATATTCAGTCATTGACAAAAAATTTTAAAATAACATATT
ATTTTTTAAATAAAAGAATC

Product: uridine phosphorylase

Products: NA

Alternate protein names: UPase; UrdPase [H]

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MTTTHSFHLGLKIGDLQGATLAILPGDPNRVKKIASLMDGAKYIFSNREFTTWSAKINKETVIVCSTGIGGPSTSIVVEE
LSQLGIRTFLRVGTSGAIQKYIKIGDVLIITAAVRCDGASQHFAPLEFPAVADLSCTIALIQAAKNIGIKSHFGVTVSSD
TFYPGQERQDTYSGRVIQKLRGSMEEWKNLGVMSYEMESATLLTMCLSQGLRAGVVTGVIVNRTQKEIPNVTLIHHTEYM
AMKVAIEGAHIILSKSNTFLHRYAE

Sequences:

>Translated_265_residues
MTTTHSFHLGLKIGDLQGATLAILPGDPNRVKKIASLMDGAKYIFSNREFTTWSAKINKETVIVCSTGIGGPSTSIVVEE
LSQLGIRTFLRVGTSGAIQKYIKIGDVLIITAAVRCDGASQHFAPLEFPAVADLSCTIALIQAAKNIGIKSHFGVTVSSD
TFYPGQERQDTYSGRVIQKLRGSMEEWKNLGVMSYEMESATLLTMCLSQGLRAGVVTGVIVNRTQKEIPNVTLIHHTEYM
AMKVAIEGAHIILSKSNTFLHRYAE
>Mature_264_residues
TTTHSFHLGLKIGDLQGATLAILPGDPNRVKKIASLMDGAKYIFSNREFTTWSAKINKETVIVCSTGIGGPSTSIVVEEL
SQLGIRTFLRVGTSGAIQKYIKIGDVLIITAAVRCDGASQHFAPLEFPAVADLSCTIALIQAAKNIGIKSHFGVTVSSDT
FYPGQERQDTYSGRVIQKLRGSMEEWKNLGVMSYEMESATLLTMCLSQGLRAGVVTGVIVNRTQKEIPNVTLIHHTEYMA
MKVAIEGAHIILSKSNTFLHRYAE

Specific function: Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synth

COG id: COG2820

COG function: function code F; Uridine phosphorylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PNP/UDP phosphorylase family [H]

Homologues:

Organism=Escherichia coli, GI1790265, Length=253, Percent_Identity=68.3794466403162, Blast_Score=370, Evalue=1e-104,
Organism=Escherichia coli, GI1790844, Length=210, Percent_Identity=30, Blast_Score=85, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018017
- InterPro:   IPR018016
- InterPro:   IPR000845
- InterPro:   IPR010058 [H]

Pfam domain/function: PF01048 PNP_UDP_1 [H]

EC number: =2.4.2.3 [H]

Molecular weight: Translated: 28821; Mature: 28690

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS01232 PNP_UDP_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTHSFHLGLKIGDLQGATLAILPGDPNRVKKIASLMDGAKYIFSNREFTTWSAKINKE
CCCCEEEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHCCHHHHHCCCCEEEEEEEECCC
TVIVCSTGIGGPSTSIVVEELSQLGIRTFLRVGTSGAIQKYIKIGDVLIITAAVRCDGAS
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEEEEEECCCCC
QHFAPLEFPAVADLSCTIALIQAAKNIGIKSHFGVTVSSDTFYPGQERQDTYSGRVIQKL
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHH
RGSMEEWKNLGVMSYEMESATLLTMCLSQGLRAGVVTGVIVNRTQKEIPNVTLIHHTEYM
HCCHHHHHCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHEECCHHHHCCCEEEEEECCEE
AMKVAIEGAHIILSKSNTFLHRYAE
EEEEEECCEEEEEECCCCEEEECCC
>Mature Secondary Structure 
TTTHSFHLGLKIGDLQGATLAILPGDPNRVKKIASLMDGAKYIFSNREFTTWSAKINKE
CCCEEEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHCCHHHHHCCCCEEEEEEEECCC
TVIVCSTGIGGPSTSIVVEELSQLGIRTFLRVGTSGAIQKYIKIGDVLIITAAVRCDGAS
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEEEEEECCCCC
QHFAPLEFPAVADLSCTIALIQAAKNIGIKSHFGVTVSSDTFYPGQERQDTYSGRVIQKL
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHH
RGSMEEWKNLGVMSYEMESATLLTMCLSQGLRAGVVTGVIVNRTQKEIPNVTLIHHTEYM
HCCHHHHHCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHEECCHHHHCCCEEEEEECCEE
AMKVAIEGAHIILSKSNTFLHRYAE
EEEEEECCEEEEEECCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2674901; 1379743; 9278503; 8506346; 8899705; 9661793; 7796917; 12499542 [H]