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The map label for this gene is pal [H]

Identifier: 71892117

GI number: 71892117

Start: 413371

End: 413898

Strand: Direct

Name: pal [H]

Synonym: BPEN_349

Alternate gene names: 71892117

Gene position: 413371-413898 (Clockwise)

Preceding gene: 71892116

Following gene: 71892118

Centisome position: 52.22

GC content: 27.84

Gene sequence:

>528_bases
ATGAAACCAAACAATTTTTTTAAACAACTAATATCCGCGATAAGTGTGAGCATAGTAATAACTGCATGTTCTTCGTTATC
TCAGTACGATACTGTTACTCCTAATCAAAAAAAAGTTGAATTAAATCATTTTAATCATACTAATATAAAAAATAGTAGAG
TAATCGATGAACAAATACAATTAAAAACACAAGAATTAAAATCCAATAATGTTATTTATTTTCCTTTAGACCAATATGAT
ATTCCTTCTAATTTTTTTTACTCATTAAACATCCATGCCAATTTTTTATATAATAATCCATTACAACATATTAAAATTGA
AGGCCATGCTGATGAACGTGGTACTCCAGAATACAATATTGCATTGGGTGAACGTCGAGCTAACTCTGTAAAATCATACC
TCCAAAGTAAAGGTGTATTATCTGAACAAATGTTAACTATATCTTATGGTAAAGAAAAACCAGCTGTATTAGGACAAAAC
GAAGAAGCTTACTCTAAAAATAGACGCGTTGTATTAATATATAAATAA

Upstream 100 bases:

>100_bases
ATATAAGATTTCCAACTTGGTCTCCATTACATTTAGAATAAGATAATAACTATTTTCATTACGATTAACAATTTAAAAAT
AATGAACAATGGATATATAA

Downstream 100 bases:

>100_bases
TATTCATATGCTTAAGTATATACTATTTCTATGTAAATTAAATATAATCATCATAATGATGATATATTTTAATATTACAA
ATAATAATATTGTATATGCT

Product: Pal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MKPNNFFKQLISAISVSIVITACSSLSQYDTVTPNQKKVELNHFNHTNIKNSRVIDEQIQLKTQELKSNNVIYFPLDQYD
IPSNFFYSLNIHANFLYNNPLQHIKIEGHADERGTPEYNIALGERRANSVKSYLQSKGVLSEQMLTISYGKEKPAVLGQN
EEAYSKNRRVVLIYK

Sequences:

>Translated_175_residues
MKPNNFFKQLISAISVSIVITACSSLSQYDTVTPNQKKVELNHFNHTNIKNSRVIDEQIQLKTQELKSNNVIYFPLDQYD
IPSNFFYSLNIHANFLYNNPLQHIKIEGHADERGTPEYNIALGERRANSVKSYLQSKGVLSEQMLTISYGKEKPAVLGQN
EEAYSKNRRVVLIYK
>Mature_175_residues
MKPNNFFKQLISAISVSIVITACSSLSQYDTVTPNQKKVELNHFNHTNIKNSRVIDEQIQLKTQELKSNNVIYFPLDQYD
IPSNFFYSLNIHANFLYNNPLQHIKIEGHADERGTPEYNIALGERRANSVKSYLQSKGVLSEQMLTISYGKEKPAVLGQN
EEAYSKNRRVVLIYK

Specific function: Thought to play a role in bacterial envelope integrity. Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=175, Percent_Identity=48.5714285714286, Blast_Score=162, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 20099; Mature: 20099

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPNNFFKQLISAISVSIVITACSSLSQYDTVTPNQKKVELNHFNHTNIKNSRVIDEQIQ
CCCHHHHHHHHHHHHHHHHEEHHHCCHHCCCCCCCCEEEEEECCCCCCCCCCEEEHHHHH
LKTQELKSNNVIYFPLDQYDIPSNFFYSLNIHANFLYNNPLQHIKIEGHADERGTPEYNI
HHHHHHCCCCEEEEECCCCCCCCCEEEEEEEEEEEEECCCCEEEEEECCCCCCCCCCEEE
ALGERRANSVKSYLQSKGVLSEQMLTISYGKEKPAVLGQNEEAYSKNRRVVLIYK
EECCHHHHHHHHHHHHCCCCHHEEEEEECCCCCCCEECCCCHHHHCCCEEEEEEC
>Mature Secondary Structure
MKPNNFFKQLISAISVSIVITACSSLSQYDTVTPNQKKVELNHFNHTNIKNSRVIDEQIQ
CCCHHHHHHHHHHHHHHHHEEHHHCCHHCCCCCCCCEEEEEECCCCCCCCCCEEEHHHHH
LKTQELKSNNVIYFPLDQYDIPSNFFYSLNIHANFLYNNPLQHIKIEGHADERGTPEYNI
HHHHHHCCCCEEEEECCCCCCCCCEEEEEEEEEEEEECCCCEEEEEECCCCCCCCCCEEE
ALGERRANSVKSYLQSKGVLSEQMLTISYGKEKPAVLGQNEEAYSKNRRVVLIYK
EECCHHHHHHHHHHHHCCCCHHEEEEEECCCCCCCEECCCCHHHHCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]