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The map label for this gene is rlpB [H]

Identifier: 71892093

GI number: 71892093

Start: 379255

End: 379818

Strand: Reverse

Name: rlpB [H]

Synonym: BPEN_320

Alternate gene names: 71892093

Gene position: 379818-379255 (Counterclockwise)

Preceding gene: 71892094

Following gene: 71892092

Centisome position: 47.98

GC content: 30.14

Gene sequence:

>564_bases
ATGCTGGACATTGCTTATATAAAAAAAATAATTTTTTTAATGATTGTAAGTGTTTTGACTGTGATTATCTTTACAAGTTG
TGGTTATCAATTATATACAGATACAACCTTAAAAAAATTACGGACAAATAATATAAGATCTATAATATTATGTAGTTATG
ACCCATTTGGTCCGATAAATCGAGCTATAATGACTGAGTTACACGCAAGTCGTATTGATATTTTTGATGATTTAAATGAT
TTACGTAGTAATGTGTGTACACGAGAGGCACAAATTCCTCGTTTAAATATCATCAATGCTTCAGAAAAACATATAACCAC
TTCTGTATTTCAGAACGGAAAAGAAGCTGGATATCGATTGACATTGAGTATACAAACTCATTTGTTCGTTCCAAACAGAA
ATTATTACCCCATCAGTGTTTACGTGTATCGTTCACTTATAAGAAATCCTGAAAAAGCTTTATTTAATGACATGCAAGAA
AATGATATTCGTAAAGAAATATATCGAGATGCGGCTCAACAGCTAATATATCAATTATTTCTGCGATGTGAAGATTTTAG
TTAG

Upstream 100 bases:

>100_bases
GAAACAGAGGGAGTTTTAAATAAATATCTTATTGGAAAAAAAATAAATAATATAATTTATGTTCCAAATAGAGTAATCAA
TATCATTGCAAAATAGTAAT

Downstream 100 bases:

>100_bases
GATATGTTGTAAAATCATTTTTTATATTTAATATAAATTTTTTATTTCACCATCAAAAATATATTATGATTTGGATATAC
CCAGAACAATTGTGTATAGA

Product: rare lipoprotein B precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MLDIAYIKKIIFLMIVSVLTVIIFTSCGYQLYTDTTLKKLRTNNIRSIILCSYDPFGPINRAIMTELHASRIDIFDDLND
LRSNVCTREAQIPRLNIINASEKHITTSVFQNGKEAGYRLTLSIQTHLFVPNRNYYPISVYVYRSLIRNPEKALFNDMQE
NDIRKEIYRDAAQQLIYQLFLRCEDFS

Sequences:

>Translated_187_residues
MLDIAYIKKIIFLMIVSVLTVIIFTSCGYQLYTDTTLKKLRTNNIRSIILCSYDPFGPINRAIMTELHASRIDIFDDLND
LRSNVCTREAQIPRLNIINASEKHITTSVFQNGKEAGYRLTLSIQTHLFVPNRNYYPISVYVYRSLIRNPEKALFNDMQE
NDIRKEIYRDAAQQLIYQLFLRCEDFS
>Mature_187_residues
MLDIAYIKKIIFLMIVSVLTVIIFTSCGYQLYTDTTLKKLRTNNIRSIILCSYDPFGPINRAIMTELHASRIDIFDDLND
LRSNVCTREAQIPRLNIINASEKHITTSVFQNGKEAGYRLTLSIQTHLFVPNRNYYPISVYVYRSLIRNPEKALFNDMQE
NDIRKEIYRDAAQQLIYQLFLRCEDFS

Specific function: Together with lptD, is involved in the assembly of LPS in the outer leaflet of the outer membrane [H]

COG id: COG2980

COG function: function code M; Rare lipoprotein B

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptE lipoprotein family [H]

Homologues:

Organism=Escherichia coli, GI1786860, Length=161, Percent_Identity=33.5403726708075, Blast_Score=100, Evalue=7e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007485 [H]

Pfam domain/function: PF04390 RplB [H]

EC number: NA

Molecular weight: Translated: 21874; Mature: 21874

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDIAYIKKIIFLMIVSVLTVIIFTSCGYQLYTDTTLKKLRTNNIRSIILCSYDPFGPIN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCEEEEECCCCCCHHH
RAIMTELHASRIDIFDDLNDLRSNVCTREAQIPRLNIINASEKHITTSVFQNGKEAGYRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCEEE
TLSIQTHLFVPNRNYYPISVYVYRSLIRNPEKALFNDMQENDIRKEIYRDAAQQLIYQLF
EEEEEEEEEECCCCCEEHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LRCEDFS
HHHCCCC
>Mature Secondary Structure
MLDIAYIKKIIFLMIVSVLTVIIFTSCGYQLYTDTTLKKLRTNNIRSIILCSYDPFGPIN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCEEEEECCCCCCHHH
RAIMTELHASRIDIFDDLNDLRSNVCTREAQIPRLNIINASEKHITTSVFQNGKEAGYRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCEEE
TLSIQTHLFVPNRNYYPISVYVYRSLIRNPEKALFNDMQENDIRKEIYRDAAQQLIYQLF
EEEEEEEEEECCCCCEEHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LRCEDFS
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA