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The map label for this gene is recD [H]

Identifier: 71892049

GI number: 71892049

Start: 316824

End: 318731

Strand: Reverse

Name: recD [H]

Synonym: BPEN_275

Alternate gene names: 71892049

Gene position: 318731-316824 (Counterclockwise)

Preceding gene: 71892050

Following gene: 71892042

Centisome position: 40.26

GC content: 29.98

Gene sequence:

>1908_bases
ATGAAAGATGTTATTAACAATATTTTAAAATTAGGGTTGTGGCATTCACTAGATGTACAATTTGCCGATGTATTAGCTCT
TCCCATTTATGATGGGAATCGACATAATAATATAAAGGAAGCATTAATTTTAGCTAGCGCAACTCTAAGCTCTAAAGTTA
GGGATGGCCATGTTTGTTTACCTTTGCGGTGTCTTACTCCCGATAAATTATTTCAAGGAAATTATCCTGAATTAACGTAT
GCGATATATAGAAAATTAGGAAAATTATCGATATCCTCCTGGCAGGAATTATTGTTTTCTTGTCCCGCAGTTAGTGATGG
ATCACGGGTTACCCCATTAATATTGGAAAATAAACGTTTGTATTTACATCACATGTGGCAAGATGAATGCATAGTCGCGC
AATTTTTTAATCATAAATATCCATCAAATGTTTTTCAAAAAGAAAAAATAATTTATGCATTAAATCAATTATTTCCTATA
ACTTATACAGAAGTTGATTGGCATAAAATAGCTACTGCTATTGGCGTAACACATCACAGAGTGCTAATTTCTGGAGGACC
TGGAACTGGAAAAACATCTATTATAGCGAAGATAGTAGCGACATTATTGTTATGTAGCAAGAATAATGATCTAAATATTC
AAATAACCGCTCCCACAGGAAAAGCAACAGCTCTTTTAACTGAATCTTTCAGAACAACAATACACAATATTCCACAATTA
GAAAAGCTTCTCTTATGTAACTTACCAGAAAAAGCTACTACTCTACATAGTTTGCTTAGAACACGATTATATAAAGAAAA
TATTCAATATAACTGCTTTAATCTCACGCGCTTAGATCTTTTAATTATTGATGAAGCTTCTATGGTTAGTCTATCTATGT
TAGCTCAGCTAATTTTGATGCTTTCTCCTCAAACGAAAGTTATTTTTTTGGGTGATCAATATCAATTATGTTCAGTAGAA
CCCGGATCCGTATTTAAAGATGTGTGTCAATTTTCTAATTTTTATTATTCTCGTAAACGTTATCAAGAACTTATAGATCT
TACAGGTTACATATTGCCTATTATATCTCCTTCTAAATCATCTATGCATTACAATTATAATAGTATTATTGATGGCACAT
GTATACTAAAGAAAAATTATCGATTTAGTGAAAGTTCAGGAATTAATAAATTATCTGGTGCTATAAATTCAGGAGATTAT
AATCATGCGTTATCATTGTTAAAATCAAGCATATATAAGGATTTATGTTATATTTATTTTGTAGACAAAAAAAGCTATAT
AACTATGATTCTTAATTGTGCAATGGCATATTCTAACTATTTACAAAAATTGAAATACACTAAAATCCTGACAGAAAATA
TTTTAAAGATTTTCAATCATTATCGAATATTATGTGCATTACGTGATGGCCCGTTCGGAGTAATAAGACTTAATTATTAT
ATTGAACAAATATTAAATGAGAAAGGATTAATTCAATTAAATAATTCTAGGAATTATTTAGGTAGACCTATTATTATATT
ACGTAATAAACCATCATTAGAATTATATAATGGAGATGTTGGTGTATTGTTATTAAATGATCAAAATAAATTGTCTGCAT
ATTTTATTTTGCCACGAGGAAGTATAAAAGTTATACAAATAAATCAATTACCGGAGCATGAAACTTGTTTTGCTATGACT
ATACATAAAGCGCAAGGATCTGAATTTCAACATACCGCAATAGTATTGCCCAATAAATATATACCATTATTGACACGAGA
ATTACTCTATACTGCTGTCACTAGAGCTCGCCAATGCCTTTATTTGTACGCGACAGATCATGTAATAATACGCAGTGTTA
ATTCTATCACACAACGTTATAGTGGATTATATGAAAAAATAAAAAACCATATAATTCCCATGGCTTAA

Upstream 100 bases:

>100_bases
TAAAATTTAAAATTGTAATTATCCGTTTTTAACCAAAAAATACAGTTTTTCTGTCGTTTAAAATATACAATCTAATATTG
TAGACCGTAAAAATAGTCTC

Downstream 100 bases:

>100_bases
TGAATGAAAAGTTTGTGTTTTATTATATATATTGTTTGAAAATGTAGTGTTATGTGTTTGTGTAATATATGCAATTTTTA
ATTATAAAGTATTTATTATT

Product: exonuclease V, alpha chain

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 635; Mature: 635

Protein sequence:

>635_residues
MKDVINNILKLGLWHSLDVQFADVLALPIYDGNRHNNIKEALILASATLSSKVRDGHVCLPLRCLTPDKLFQGNYPELTY
AIYRKLGKLSISSWQELLFSCPAVSDGSRVTPLILENKRLYLHHMWQDECIVAQFFNHKYPSNVFQKEKIIYALNQLFPI
TYTEVDWHKIATAIGVTHHRVLISGGPGTGKTSIIAKIVATLLLCSKNNDLNIQITAPTGKATALLTESFRTTIHNIPQL
EKLLLCNLPEKATTLHSLLRTRLYKENIQYNCFNLTRLDLLIIDEASMVSLSMLAQLILMLSPQTKVIFLGDQYQLCSVE
PGSVFKDVCQFSNFYYSRKRYQELIDLTGYILPIISPSKSSMHYNYNSIIDGTCILKKNYRFSESSGINKLSGAINSGDY
NHALSLLKSSIYKDLCYIYFVDKKSYITMILNCAMAYSNYLQKLKYTKILTENILKIFNHYRILCALRDGPFGVIRLNYY
IEQILNEKGLIQLNNSRNYLGRPIIILRNKPSLELYNGDVGVLLLNDQNKLSAYFILPRGSIKVIQINQLPEHETCFAMT
IHKAQGSEFQHTAIVLPNKYIPLLTRELLYTAVTRARQCLYLYATDHVIIRSVNSITQRYSGLYEKIKNHIIPMA

Sequences:

>Translated_635_residues
MKDVINNILKLGLWHSLDVQFADVLALPIYDGNRHNNIKEALILASATLSSKVRDGHVCLPLRCLTPDKLFQGNYPELTY
AIYRKLGKLSISSWQELLFSCPAVSDGSRVTPLILENKRLYLHHMWQDECIVAQFFNHKYPSNVFQKEKIIYALNQLFPI
TYTEVDWHKIATAIGVTHHRVLISGGPGTGKTSIIAKIVATLLLCSKNNDLNIQITAPTGKATALLTESFRTTIHNIPQL
EKLLLCNLPEKATTLHSLLRTRLYKENIQYNCFNLTRLDLLIIDEASMVSLSMLAQLILMLSPQTKVIFLGDQYQLCSVE
PGSVFKDVCQFSNFYYSRKRYQELIDLTGYILPIISPSKSSMHYNYNSIIDGTCILKKNYRFSESSGINKLSGAINSGDY
NHALSLLKSSIYKDLCYIYFVDKKSYITMILNCAMAYSNYLQKLKYTKILTENILKIFNHYRILCALRDGPFGVIRLNYY
IEQILNEKGLIQLNNSRNYLGRPIIILRNKPSLELYNGDVGVLLLNDQNKLSAYFILPRGSIKVIQINQLPEHETCFAMT
IHKAQGSEFQHTAIVLPNKYIPLLTRELLYTAVTRARQCLYLYATDHVIIRSVNSITQRYSGLYEKIKNHIIPMA
>Mature_635_residues
MKDVINNILKLGLWHSLDVQFADVLALPIYDGNRHNNIKEALILASATLSSKVRDGHVCLPLRCLTPDKLFQGNYPELTY
AIYRKLGKLSISSWQELLFSCPAVSDGSRVTPLILENKRLYLHHMWQDECIVAQFFNHKYPSNVFQKEKIIYALNQLFPI
TYTEVDWHKIATAIGVTHHRVLISGGPGTGKTSIIAKIVATLLLCSKNNDLNIQITAPTGKATALLTESFRTTIHNIPQL
EKLLLCNLPEKATTLHSLLRTRLYKENIQYNCFNLTRLDLLIIDEASMVSLSMLAQLILMLSPQTKVIFLGDQYQLCSVE
PGSVFKDVCQFSNFYYSRKRYQELIDLTGYILPIISPSKSSMHYNYNSIIDGTCILKKNYRFSESSGINKLSGAINSGDY
NHALSLLKSSIYKDLCYIYFVDKKSYITMILNCAMAYSNYLQKLKYTKILTENILKIFNHYRILCALRDGPFGVIRLNYY
IEQILNEKGLIQLNNSRNYLGRPIIILRNKPSLELYNGDVGVLLLNDQNKLSAYFILPRGSIKVIQINQLPEHETCFAMT
IHKAQGSEFQHTAIVLPNKYIPLLTRELLYTAVTRARQCLYLYATDHVIIRSVNSITQRYSGLYEKIKNHIIPMA

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=608, Percent_Identity=39.9671052631579, Blast_Score=423, Evalue=1e-119,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 72511; Mature: 72511

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDVINNILKLGLWHSLDVQFADVLALPIYDGNRHNNIKEALILASATLSSKVRDGHVCL
CHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEE
PLRCLTPDKLFQGNYPELTYAIYRKLGKLSISSWQELLFSCPAVSDGSRVTPLILENKRL
EEEECCCHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCEE
YLHHMWQDECIVAQFFNHKYPSNVFQKEKIIYALNQLFPITYTEVDWHKIATAIGVTHHR
EEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHCCEEEE
VLISGGPGTGKTSIIAKIVATLLLCSKNNDLNIQITAPTGKATALLTESFRTTIHNIPQL
EEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHH
EKLLLCNLPEKATTLHSLLRTRLYKENIQYNCFNLTRLDLLIIDEASMVSLSMLAQLILM
HHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECCCHHHHHHHHHHHHHH
LSPQTKVIFLGDQYQLCSVEPGSVFKDVCQFSNFYYSRKRYQELIDLTGYILPIISPSKS
CCCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCC
SMHYNYNSIIDGTCILKKNYRFSESSGINKLSGAINSGDYNHALSLLKSSIYKDLCYIYF
CEEECCCCEECCEEEEEECCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCEEEEEE
VDKKSYITMILNCAMAYSNYLQKLKYTKILTENILKIFNHYRILCALRDGPFGVIRLNYY
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCEEEEEHHHH
IEQILNEKGLIQLNNSRNYLGRPIIILRNKPSLELYNGDVGVLLLNDQNKLSAYFILPRG
HHHHHCCCCEEEECCCCCCCCCCEEEEECCCCEEEECCCEEEEEECCCCCEEEEEEEECC
SIKVIQINQLPEHETCFAMTIHKAQGSEFQHTAIVLPNKYIPLLTRELLYTAVTRARQCL
CEEEEEECCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHEE
YLYATDHVIIRSVNSITQRYSGLYEKIKNHIIPMA
EEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKDVINNILKLGLWHSLDVQFADVLALPIYDGNRHNNIKEALILASATLSSKVRDGHVCL
CHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEE
PLRCLTPDKLFQGNYPELTYAIYRKLGKLSISSWQELLFSCPAVSDGSRVTPLILENKRL
EEEECCCHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCEE
YLHHMWQDECIVAQFFNHKYPSNVFQKEKIIYALNQLFPITYTEVDWHKIATAIGVTHHR
EEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHCCEEEE
VLISGGPGTGKTSIIAKIVATLLLCSKNNDLNIQITAPTGKATALLTESFRTTIHNIPQL
EEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHH
EKLLLCNLPEKATTLHSLLRTRLYKENIQYNCFNLTRLDLLIIDEASMVSLSMLAQLILM
HHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECCCHHHHHHHHHHHHHH
LSPQTKVIFLGDQYQLCSVEPGSVFKDVCQFSNFYYSRKRYQELIDLTGYILPIISPSKS
CCCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCC
SMHYNYNSIIDGTCILKKNYRFSESSGINKLSGAINSGDYNHALSLLKSSIYKDLCYIYF
CEEECCCCEECCEEEEEECCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCEEEEEE
VDKKSYITMILNCAMAYSNYLQKLKYTKILTENILKIFNHYRILCALRDGPFGVIRLNYY
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCEEEEEHHHH
IEQILNEKGLIQLNNSRNYLGRPIIILRNKPSLELYNGDVGVLLLNDQNKLSAYFILPRG
HHHHHCCCCEEEECCCCCCCCCCEEEEECCCCEEEECCCEEEEEECCCCCEEEEEEEECC
SIKVIQINQLPEHETCFAMTIHKAQGSEFQHTAIVLPNKYIPLLTRELLYTAVTRARQCL
CEEEEEECCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHEE
YLYATDHVIIRSVNSITQRYSGLYEKIKNHIIPMA
EEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3537961; 9278503; 3537960 [H]