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The map label for this gene is ybdB [C]

Identifier: 68535990

GI number: 68535990

Start: 1090351

End: 1090854

Strand: Direct

Name: ybdB [C]

Synonym: jk0913

Alternate gene names: 68535990

Gene position: 1090351-1090854 (Clockwise)

Preceding gene: 68535983

Following gene: 68535992

Centisome position: 44.28

GC content: 60.52

Gene sequence:

>504_bases
GTGTTGGTTAGTCTTAGGCACATGTCCAATATTTTCATTGAACTAAGTCGTGTTGCCACCGAGCGTGATCTCACCGAGCA
GGAGATCGCCACCCTCAACGAACTGCTGGCCAAACACCCCACCCTCGACCGGACCCTCGGCGTGCAGTACCGTGCCATCG
GTCCGGACAAGTTGCAACTGGCTCTCGAGGTCACCGAGGATCACCTGCAGCCCTGGGGTGTGACCAACGGCGGCGTGTAT
GCCAGCCTGGGGGAGACCGCCGGTTCCATGGCCAGCTTCGTCGCCGCAGGTGCTGGCCCGGCTGTAGTGGGTACCTCGAA
CCAGACGCATTTCCTGCGACCATCCGTCAAGGGCGATGTCATCGTCTCCACAGCCCAGGCGGAGCACATTGGACGCACCA
CGCACCTGTTCCGCGTGGAGCACAAAAACGAAAAAACCGGCAAAACCTGCGCCTTGACCTTCCTCAAGACGCAGGTGGTG
CCAGATATGCAGCGCGCTCGGTAG

Upstream 100 bases:

>100_bases
AAGTTCCGGGCGATGTTGGAGCCCATCACGGCCAGTCCAACAACACCGATTTGGGCGGTTCCTTCAGCAGTAGTCATGGT
TTTACATCTTACAGGGCGAT

Downstream 100 bases:

>100_bases
GCGCTAGTCGGAGACTGCGCGGGTGTCGCGGCCCTCGCCGAAGCGCAGGTTGTCGCGCACCTCGATGGAGCGGATGCCTT
CCTTGTCCTCCAGGTCGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MLVSLRHMSNIFIELSRVATERDLTEQEIATLNELLAKHPTLDRTLGVQYRAIGPDKLQLALEVTEDHLQPWGVTNGGVY
ASLGETAGSMASFVAAGAGPAVVGTSNQTHFLRPSVKGDVIVSTAQAEHIGRTTHLFRVEHKNEKTGKTCALTFLKTQVV
PDMQRAR

Sequences:

>Translated_167_residues
MLVSLRHMSNIFIELSRVATERDLTEQEIATLNELLAKHPTLDRTLGVQYRAIGPDKLQLALEVTEDHLQPWGVTNGGVY
ASLGETAGSMASFVAAGAGPAVVGTSNQTHFLRPSVKGDVIVSTAQAEHIGRTTHLFRVEHKNEKTGKTCALTFLKTQVV
PDMQRAR
>Mature_167_residues
MLVSLRHMSNIFIELSRVATERDLTEQEIATLNELLAKHPTLDRTLGVQYRAIGPDKLQLALEVTEDHLQPWGVTNGGVY
ASLGETAGSMASFVAAGAGPAVVGTSNQTHFLRPSVKGDVIVSTAQAEHIGRTTHLFRVEHKNEKTGKTCALTFLKTQVV
PDMQRAR

Specific function: Unknown

COG id: COG2050

COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thioesterase PaaI family [H]

Homologues:

Organism=Escherichia coli, GI1786813, Length=132, Percent_Identity=37.1212121212121, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003736
- InterPro:   IPR006683 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 18187; Mature: 18187

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVSLRHMSNIFIELSRVATERDLTEQEIATLNELLAKHPTLDRTLGVQYRAIGPDKLQL
CEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCEEEEECCCCCEEE
ALEVTEDHLQPWGVTNGGVYASLGETAGSMASFVAAGAGPAVVGTSNQTHFLRPSVKGDV
EEEECHHCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEECCCCCEEECCCCCCCE
IVSTAQAEHIGRTTHLFRVEHKNEKTGKTCALTFLKTQVVPDMQRAR
EEEECCHHHCCCEEEEEEEECCCCCCCCEEEHHHHHHHHCCCHHHCC
>Mature Secondary Structure
MLVSLRHMSNIFIELSRVATERDLTEQEIATLNELLAKHPTLDRTLGVQYRAIGPDKLQL
CEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCEEEEECCCCCEEE
ALEVTEDHLQPWGVTNGGVYASLGETAGSMASFVAAGAGPAVVGTSNQTHFLRPSVKGDV
EEEECHHCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEECCCCCEEECCCCCCCE
IVSTAQAEHIGRTTHLFRVEHKNEKTGKTCALTFLKTQVVPDMQRAR
EEEECCHHHCCCEEEEEEEECCCCCCCCEEEHHHHHHHHCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]