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The map label for this gene is yqxC [H]

Identifier: 68535941

GI number: 68535941

Start: 1032585

End: 1033436

Strand: Direct

Name: yqxC [H]

Synonym: jk0864

Alternate gene names: 68535941

Gene position: 1032585-1033436 (Clockwise)

Preceding gene: 68535940

Following gene: 68535942

Centisome position: 41.93

GC content: 63.97

Gene sequence:

>852_bases
ATGGCCAAGAGGGGGCCGAAGCTGCAGCGGCTGGACGCGGAACTGGTGGCGCGGAAGATCGCCCGCAGCCGCGAGCATGC
CCAGGAAATGATCAAGGCCGGGCGCGTGACCGTCAACGGCATGCTGGCGAAGAAGCCGGCCAGCGGCGTGGACGGGAACG
TATCCATCAAGGTCGCAGAGTCCGAAGACGACCGTTGGGCCAGCCGCGGCGCGCACAAGCTTCTGGGAGCACTGGAGGCT
TTCGAACCGCAGGGCCTCAGCGTGGAAGGCAAGACCGTCCTGGATGCCGGAGCCTCCACCGGCGGCTTTACCGATGTGTG
CCTGGATCGCGGTGCGGCGAAGGTGAAGGCGGTGGACGTGGGCTATGGCCAGTTGATCTGGCGGCTGCAGAACGACGACC
GGGTGGACGTCATGGATCGCACGAACGTGCGTACCCTCACCCCCGAAGACCTTGGTGGCCAGGTGGATCTGATGGTGGGG
GACTTGAGCTTCATTTCTATTCGCCTGGTGCTTCCCGCGCTGTCCGCGTGCGTGAAGGAAGGCGGGGATCTGCTGCCGAT
GGTGAAGCCACAGTTCGAGGTCGGCAAGGATCGCCTGGGGCACGGCGGGGTGGTCCGCAGCCCTGAATTGCGTGCGGAAG
TGACCCGCGAGGTCGCCGTCGAGGCGATGAAGTATGGTTTGAGTACGAAGGCCGTTGTCGCCTCCCCGCTGCCGGGGCCA
AGCGGCAATGTTGAGTATTTTCTCTGGTTGGTCAAGGACAGTGCTGCGGTTTCACCTAGCATGGTTGAAGAGGCTGACCA
CACCGGCCTGGACGAGATGATCGCAACCGCTATTAAGGAGGGCCCGCAGTGA

Upstream 100 bases:

>100_bases
TCGACGAGCTACTCGCGCGCGACGTCCACGGCGCCGAAGAAGCAGCAGTGCTGGAGGAAGCTCACCGGGTGGTAAACGAG
GCACTCGGAGGCGAACGCTA

Downstream 100 bases:

>100_bases
CCACACCGGGGACTGACCACAACGCGGATCAGGGCGCGGATTCTGGCGACAAGGCCACCAAGGCTGCTTCTGGCGCACAG
ACCGAACGTGAGGTTCTGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MAKRGPKLQRLDAELVARKIARSREHAQEMIKAGRVTVNGMLAKKPASGVDGNVSIKVAESEDDRWASRGAHKLLGALEA
FEPQGLSVEGKTVLDAGASTGGFTDVCLDRGAAKVKAVDVGYGQLIWRLQNDDRVDVMDRTNVRTLTPEDLGGQVDLMVG
DLSFISIRLVLPALSACVKEGGDLLPMVKPQFEVGKDRLGHGGVVRSPELRAEVTREVAVEAMKYGLSTKAVVASPLPGP
SGNVEYFLWLVKDSAAVSPSMVEEADHTGLDEMIATAIKEGPQ

Sequences:

>Translated_283_residues
MAKRGPKLQRLDAELVARKIARSREHAQEMIKAGRVTVNGMLAKKPASGVDGNVSIKVAESEDDRWASRGAHKLLGALEA
FEPQGLSVEGKTVLDAGASTGGFTDVCLDRGAAKVKAVDVGYGQLIWRLQNDDRVDVMDRTNVRTLTPEDLGGQVDLMVG
DLSFISIRLVLPALSACVKEGGDLLPMVKPQFEVGKDRLGHGGVVRSPELRAEVTREVAVEAMKYGLSTKAVVASPLPGP
SGNVEYFLWLVKDSAAVSPSMVEEADHTGLDEMIATAIKEGPQ
>Mature_282_residues
AKRGPKLQRLDAELVARKIARSREHAQEMIKAGRVTVNGMLAKKPASGVDGNVSIKVAESEDDRWASRGAHKLLGALEAF
EPQGLSVEGKTVLDAGASTGGFTDVCLDRGAAKVKAVDVGYGQLIWRLQNDDRVDVMDRTNVRTLTPEDLGGQVDLMVGD
LSFISIRLVLPALSACVKEGGDLLPMVKPQFEVGKDRLGHGGVVRSPELRAEVTREVAVEAMKYGLSTKAVVASPLPGPS
GNVEYFLWLVKDSAAVSPSMVEEADHTGLDEMIATAIKEGPQ

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30224; Mature: 30093

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKRGPKLQRLDAELVARKIARSREHAQEMIKAGRVTVNGMLAKKPASGVDGNVSIKVAE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECEEECCCCCCCCCCEEEEEEC
SEDDRWASRGAHKLLGALEAFEPQGLSVEGKTVLDAGASTGGFTDVCLDRGAAKVKAVDV
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCEEEEEEC
GYGQLIWRLQNDDRVDVMDRTNVRTLTPEDLGGQVDLMVGDLSFISIRLVLPALSACVKE
CCCEEEEEECCCCEEEEECCCCCEEECHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHC
GGDLLPMVKPQFEVGKDRLGHGGVVRSPELRAEVTREVAVEAMKYGLSTKAVVASPLPGP
CCCCCCCCCCCHHHCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC
SGNVEYFLWLVKDSAAVSPSMVEEADHTGLDEMIATAIKEGPQ
CCCCEEEEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
AKRGPKLQRLDAELVARKIARSREHAQEMIKAGRVTVNGMLAKKPASGVDGNVSIKVAE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECEEECCCCCCCCCCEEEEEEC
SEDDRWASRGAHKLLGALEAFEPQGLSVEGKTVLDAGASTGGFTDVCLDRGAAKVKAVDV
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCEEEEEEC
GYGQLIWRLQNDDRVDVMDRTNVRTLTPEDLGGQVDLMVGDLSFISIRLVLPALSACVKE
CCCEEEEEECCCCEEEEECCCCCEEECHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHC
GGDLLPMVKPQFEVGKDRLGHGGVVRSPELRAEVTREVAVEAMKYGLSTKAVVASPLPGP
CCCCCCCCCCCHHHCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC
SGNVEYFLWLVKDSAAVSPSMVEEADHTGLDEMIATAIKEGPQ
CCCCEEEEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]