Click here to switch to the map view.

The map label for this gene is fis [C]

Identifier: 66766859

GI number: 66766859

Start: 616952

End: 617224

Strand: Reverse

Name: fis [C]

Synonym: XC_0520

Alternate gene names: 66766859

Gene position: 617224-616952 (Counterclockwise)

Preceding gene: 77761091

Following gene: 66766849

Centisome position: 11.99

GC content: 62.64

Gene sequence:

>273_bases
TTGAACGCAGCCCCCTCTCGTCCTGACAGCAGTCGTGGCGCCCCGAAGTCGCCGCTGCGCGAACACGTCGCGCAGTCCGT
GCGCCGCTATTTGCGCGACCTCGACGGCAGCGATGCCGACGACGTGTATGAAATCGTGCTGCGCGAGATGGAAATCCCGT
TGTTCGTCGAAGTGCTCAACCATTGCGAAGGCAATCAGAGCCGCGCCGCGGCCATGCTGGGCATTCACCGCGCTACGCTG
CGCAAGAAGCTCAAAGAGTATGGGCTGACGTAG

Upstream 100 bases:

>100_bases
GCGCCACCCCACATGGGCGTGGCGAGCGGTGAGGTCACGCGCTAGACTCACTCCCCCTCGCCGGCCACGCGTCCCGGCTT
CGTGACACTGGGAACCTCCT

Downstream 100 bases:

>100_bases
GTTTGGGAATCGGGAATCGCAAGAGCATTCCTCCCGATACCTACTGTTGCGCGGGCCGGTGCGCGGATGGCCCGGAACAG
CAGAAGACTTCGCGTCGCAG

Product: DNA-binding protein Fis

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MNAAPSRPDSSRGAPKSPLREHVAQSVRRYLRDLDGSDADDVYEIVLREMEIPLFVEVLNHCEGNQSRAAAMLGIHRATL
RKKLKEYGLT

Sequences:

>Translated_90_residues
MNAAPSRPDSSRGAPKSPLREHVAQSVRRYLRDLDGSDADDVYEIVLREMEIPLFVEVLNHCEGNQSRAAAMLGIHRATL
RKKLKEYGLT
>Mature_90_residues
MNAAPSRPDSSRGAPKSPLREHVAQSVRRYLRDLDGSDADDVYEIVLREMEIPLFVEVLNHCEGNQSRAAAMLGIHRATL
RKKLKEYGLT

Specific function: Activates Ribosomal RNA Transcription. Plays A Direct Role In Upstream Activation Of rRNA Promoters. Binds To A Recombinational Enhancer Sequence That Is Required To Stimulate Hin-Mediated DNA Inversion. Prevents Initiation Of DNA Replication From Oric.

COG id: COG2901

COG function: function code KL; Factor for inversion stimulation Fis, transcriptional activator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transcriptional regulatory fis family [H]

Homologues:

Organism=Escherichia coli, GI1789661, Length=84, Percent_Identity=47.6190476190476, Blast_Score=90, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005412
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197 [H]

Pfam domain/function: PF02954 HTH_8 [H]

EC number: NA

Molecular weight: Translated: 10119; Mature: 10119

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAAPSRPDSSRGAPKSPLREHVAQSVRRYLRDLDGSDADDVYEIVLREMEIPLFVEVLN
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHH
HCEGNQSRAAAMLGIHRATLRKKLKEYGLT
HCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNAAPSRPDSSRGAPKSPLREHVAQSVRRYLRDLDGSDADDVYEIVLREMEIPLFVEVLN
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHH
HCEGNQSRAAAMLGIHRATLRKKLKEYGLT
HCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12024217 [H]