| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
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The map label for this gene is yccS [H]
Identifier: 66766847
GI number: 66766847
Start: 597562
End: 599805
Strand: Reverse
Name: yccS [H]
Synonym: XC_0508
Alternate gene names: 66766847
Gene position: 599805-597562 (Counterclockwise)
Preceding gene: 66766848
Following gene: 66766845
Centisome position: 11.65
GC content: 67.6
Gene sequence:
>2244_bases ATGCCCGGGCACGCTTGCCCTTCAGAGACCGTGGCCACCACTTCGTTCGAATCCCGCCTCAGCCGCCTGTGGGCCCATGA AAAGGCCAGCTATGGCCTGCGTGTGTTCATCGCGCTGGCGGTGGCCATGGGCCTGTGCTGGCACTGGCAGCAGCTCACCG CGGTGCCGGCGCTGTTCCTGGGCGCGATCGCCAGCGCCATCGCCGAGACCGACGACAACTGGCTGGGCCGCAGCAAATCG GTACTGCTCTCGCTGTTGTGCTTCGCTGCGGCTGCGGCCGCGGTGGTGGTGCTGTTCCCGTATCCGCTGGCGTTCGTCAC CGGCATGGCCGTGGCCACCTTCTCGCTCACCCTGCTGGGCGCGCTGGGCGAGCGCTATGCCTCGATCGCGCAGGCCACGG TGGCCTTGTCGATCTACGCCATGATCGGCATGGACCAGCACGGCAGCCACGATCCGCGCATCGCCTGGCATGGCGCAGCG CTGCTGCTGGCCGGCGCCACCTGGTACGGCGTGCTGTCGATCCTGTGGACCATCCTGTTCGCCAATCGCCCGGTGCGCGA GCGGCTGTCGCGGCTGTTCTTCGAACTGGGCCGCTACCTCACGCTCAAGGCCGACCTGTTCGAACCGGTGCGGCAAAGCG ACCTGCATGCACGCCGGCTGGCGCTGGCCGAACAGAACGCCAAGGTGGTGGGCGCGCTCAATGCGGCCAAGACCGCGATC ATGAGCCGCTTCGGCCGCTCCGGCCGGCCGGGCGTGCAGTCCGGGCTGTATTTCCGGCTGTACTACATGGCGCAGGAATT CCACGAACGCGCCAGCTCCTCGCACTACCCGTACGAAGCCCTGACCGACGCGTTCTTCCACAGCGATGTGCTGTACCGCT GCCAGCGCCTGCTCGCGCTACAGGGCAAGGCCTGCGCCGCGCTGGGCGAGGCGATCCGGCTGCGCCAGCCGTTCGATTAC GGCGATCACAGTCGCCTGGCCACCGACGATCTGCGCCAGTCGCTGGACTACCTGCACGCCCGCGCCGATCCCGCGCTCAC CCGCCTGCTCGGCGCACTGGAATTGCTGGTCACCAACCTGCAGACCATCGAGCGGCGGCTGTCGGAAGCGGCGCAATTCG ATTCCACCAGCGACAACCTCGACACCCGCCTGCGCGATTCATCGCCGCACACCGTGCGCGAGATGGCCGCACGGCTTGGC CAGCAACTCACGCCCGGCTCGGTGCTGTTCCGCCACGGCCTGCGCATGGCCATCGCGCTGGTGGTGGGCTACGCGGTGAT GCAATCGATCCATGCCGACAACGGCTACTGGATCCTGCTCACCACCGCGTTTGTGTGCCGGCCCAACTACGGCGCCACGC GGCTGCGACTGGTGCAGCGCATTGCCGGCACCTTGATCGGCCTGATCGCCACCTGGGCGTTGATGCAGTTGTTCCCCGGC ACCGAGGTGCAGTTGCTGCTCGCACTGGCCGCGGCGCTGATCTTCTTCATCACCCGCACCGACCGCTACATGCTGGCCAC CGCCGGCATCACGGTGATGGCACTGTTTTGCTTCAACCTGCTCGGCGATGGCTTCGTGCTGATCTGGCCGCGCCTGATCG ACACCGTGATCGGCTGCGCCATTGCCGCTGCCGCCTCGTTCCTGATCCTGCCGGACTGGCAAGGCCGCCGCCTCAACCAG GTGATGGCCACCGTGCTGGCCAGCTGCGCGCGCTATCTGGCGCAAGTACTGGAGCAGTACGCCAGCGGCATGCGTGATGA TCTGCCGTACCGCATCGCCCGGCGCGACATGCACAACGCCGATGCTGCGCTGTCGGTAGCGCTCTCGAACATGTTGCGCG AACCCGGCCGCTACCGCCGCAACCTGGAGGCGGGCTTCCGCTTTCTGGCGCTGTCCAACACGCTGCTGGGGTATCTGTCG GCGCTAGGCGCGCACCGGGCCGCGCTCGATGGCGAACACGACGCCGGCATTGCCCAGGCCGGCGATTACCTGCAGCGCAC ACTCGGCGAGATCGCCAACGCACTCAGCCTGCGCCAGGTGCTACCCGTGCACGATGAAACCGAAGAACTGGCCATGGCCG ATGCACTCGAACAGCACGCCGTGCAACTACCACCCAAACAACGCCTGGTGCGCGACCAACTCGCGCTGACCTTGCGCCTG CTGCCCAAACTCCGCGCCGCGGCGGTGGCGGTCACCGCTGCCCCGGTCGAGACCACCGCGCCCAAGGCGCTGCAGGGCGC TTAA
Upstream 100 bases:
>100_bases CGCGCAGGCCTGATGCATGGCGTGCAGCGGCGGCGGCCACGCCGCCTACTGACAAAGGACTAGCCGGCCTGCACACCGGC GGCGCGTGCCTGCGGCAATA
Downstream 100 bases:
>100_bases GCTTTAGGCAGTGCGCGATCGGCACATCGCCGTCCCTGCCATGTCGTCAGCACCTGCAGGTGGCCCCACGAAAGACCTGC GTCGAACAATCACGCGCATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 747; Mature: 746
Protein sequence:
>747_residues MPGHACPSETVATTSFESRLSRLWAHEKASYGLRVFIALAVAMGLCWHWQQLTAVPALFLGAIASAIAETDDNWLGRSKS VLLSLLCFAAAAAAVVVLFPYPLAFVTGMAVATFSLTLLGALGERYASIAQATVALSIYAMIGMDQHGSHDPRIAWHGAA LLLAGATWYGVLSILWTILFANRPVRERLSRLFFELGRYLTLKADLFEPVRQSDLHARRLALAEQNAKVVGALNAAKTAI MSRFGRSGRPGVQSGLYFRLYYMAQEFHERASSSHYPYEALTDAFFHSDVLYRCQRLLALQGKACAALGEAIRLRQPFDY GDHSRLATDDLRQSLDYLHARADPALTRLLGALELLVTNLQTIERRLSEAAQFDSTSDNLDTRLRDSSPHTVREMAARLG QQLTPGSVLFRHGLRMAIALVVGYAVMQSIHADNGYWILLTTAFVCRPNYGATRLRLVQRIAGTLIGLIATWALMQLFPG TEVQLLLALAAALIFFITRTDRYMLATAGITVMALFCFNLLGDGFVLIWPRLIDTVIGCAIAAAASFLILPDWQGRRLNQ VMATVLASCARYLAQVLEQYASGMRDDLPYRIARRDMHNADAALSVALSNMLREPGRYRRNLEAGFRFLALSNTLLGYLS ALGAHRAALDGEHDAGIAQAGDYLQRTLGEIANALSLRQVLPVHDETEELAMADALEQHAVQLPPKQRLVRDQLALTLRL LPKLRAAAVAVTAAPVETTAPKALQGA
Sequences:
>Translated_747_residues MPGHACPSETVATTSFESRLSRLWAHEKASYGLRVFIALAVAMGLCWHWQQLTAVPALFLGAIASAIAETDDNWLGRSKS VLLSLLCFAAAAAAVVVLFPYPLAFVTGMAVATFSLTLLGALGERYASIAQATVALSIYAMIGMDQHGSHDPRIAWHGAA LLLAGATWYGVLSILWTILFANRPVRERLSRLFFELGRYLTLKADLFEPVRQSDLHARRLALAEQNAKVVGALNAAKTAI MSRFGRSGRPGVQSGLYFRLYYMAQEFHERASSSHYPYEALTDAFFHSDVLYRCQRLLALQGKACAALGEAIRLRQPFDY GDHSRLATDDLRQSLDYLHARADPALTRLLGALELLVTNLQTIERRLSEAAQFDSTSDNLDTRLRDSSPHTVREMAARLG QQLTPGSVLFRHGLRMAIALVVGYAVMQSIHADNGYWILLTTAFVCRPNYGATRLRLVQRIAGTLIGLIATWALMQLFPG TEVQLLLALAAALIFFITRTDRYMLATAGITVMALFCFNLLGDGFVLIWPRLIDTVIGCAIAAAASFLILPDWQGRRLNQ VMATVLASCARYLAQVLEQYASGMRDDLPYRIARRDMHNADAALSVALSNMLREPGRYRRNLEAGFRFLALSNTLLGYLS ALGAHRAALDGEHDAGIAQAGDYLQRTLGEIANALSLRQVLPVHDETEELAMADALEQHAVQLPPKQRLVRDQLALTLRL LPKLRAAAVAVTAAPVETTAPKALQGA >Mature_746_residues PGHACPSETVATTSFESRLSRLWAHEKASYGLRVFIALAVAMGLCWHWQQLTAVPALFLGAIASAIAETDDNWLGRSKSV LLSLLCFAAAAAAVVVLFPYPLAFVTGMAVATFSLTLLGALGERYASIAQATVALSIYAMIGMDQHGSHDPRIAWHGAAL LLAGATWYGVLSILWTILFANRPVRERLSRLFFELGRYLTLKADLFEPVRQSDLHARRLALAEQNAKVVGALNAAKTAIM SRFGRSGRPGVQSGLYFRLYYMAQEFHERASSSHYPYEALTDAFFHSDVLYRCQRLLALQGKACAALGEAIRLRQPFDYG DHSRLATDDLRQSLDYLHARADPALTRLLGALELLVTNLQTIERRLSEAAQFDSTSDNLDTRLRDSSPHTVREMAARLGQ QLTPGSVLFRHGLRMAIALVVGYAVMQSIHADNGYWILLTTAFVCRPNYGATRLRLVQRIAGTLIGLIATWALMQLFPGT EVQLLLALAAALIFFITRTDRYMLATAGITVMALFCFNLLGDGFVLIWPRLIDTVIGCAIAAAASFLILPDWQGRRLNQV MATVLASCARYLAQVLEQYASGMRDDLPYRIARRDMHNADAALSVALSNMLREPGRYRRNLEAGFRFLALSNTLLGYLSA LGAHRAALDGEHDAGIAQAGDYLQRTLGEIANALSLRQVLPVHDETEELAMADALEQHAVQLPPKQRLVRDQLALTLRLL PKLRAAAVAVTAAPVETTAPKALQGA
Specific function: Unknown
COG id: COG1289
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the yccS/yhfK family [H]
Homologues:
Organism=Escherichia coli, GI87081808, Length=718, Percent_Identity=39.4150417827298, Blast_Score=457, Evalue=1e-129, Organism=Escherichia coli, GI87082248, Length=529, Percent_Identity=25.7088846880907, Blast_Score=100, Evalue=3e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010019 - InterPro: IPR010020 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81927; Mature: 81796
Theoretical pI: Translated: 8.95; Mature: 8.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGHACPSETVATTSFESRLSRLWAHEKASYGLRVFIALAVAMGLCWHWQQLTAVPALFL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAIASAIAETDDNWLGRSKSVLLSLLCFAAAAAAVVVLFPYPLAFVTGMAVATFSLTLLG HHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALGERYASIAQATVALSIYAMIGMDQHGSHDPRIAWHGAALLLAGATWYGVLSILWTILF HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHH ANRPVRERLSRLFFELGRYLTLKADLFEPVRQSDLHARRLALAEQNAKVVGALNAAKTAI CCCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH MSRFGRSGRPGVQSGLYFRLYYMAQEFHERASSSHYPYEALTDAFFHSDVLYRCQRLLAL HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH QGKACAALGEAIRLRQPFDYGDHSRLATDDLRQSLDYLHARADPALTRLLGALELLVTNL CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH QTIERRLSEAAQFDSTSDNLDTRLRDSSPHTVREMAARLGQQLTPGSVLFRHGLRMAIAL HHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH VVGYAVMQSIHADNGYWILLTTAFVCRPNYGATRLRLVQRIAGTLIGLIATWALMQLFPG HHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TEVQLLLALAAALIFFITRTDRYMLATAGITVMALFCFNLLGDGFVLIWPRLIDTVIGCA CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHH IAAAASFLILPDWQGRRLNQVMATVLASCARYLAQVLEQYASGMRDDLPYRIARRDMHNA HHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCH DAALSVALSNMLREPGRYRRNLEAGFRFLALSNTLLGYLSALGAHRAALDGEHDAGIAQA HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH GDYLQRTLGEIANALSLRQVLPVHDETEELAMADALEQHAVQLPPKQRLVRDQLALTLRL HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH LPKLRAAAVAVTAAPVETTAPKALQGA HHHHHHHHHHHEECCCCCCCCCCCCCC >Mature Secondary Structure PGHACPSETVATTSFESRLSRLWAHEKASYGLRVFIALAVAMGLCWHWQQLTAVPALFL CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAIASAIAETDDNWLGRSKSVLLSLLCFAAAAAAVVVLFPYPLAFVTGMAVATFSLTLLG HHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALGERYASIAQATVALSIYAMIGMDQHGSHDPRIAWHGAALLLAGATWYGVLSILWTILF HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHH ANRPVRERLSRLFFELGRYLTLKADLFEPVRQSDLHARRLALAEQNAKVVGALNAAKTAI CCCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH MSRFGRSGRPGVQSGLYFRLYYMAQEFHERASSSHYPYEALTDAFFHSDVLYRCQRLLAL HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH QGKACAALGEAIRLRQPFDYGDHSRLATDDLRQSLDYLHARADPALTRLLGALELLVTNL CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH QTIERRLSEAAQFDSTSDNLDTRLRDSSPHTVREMAARLGQQLTPGSVLFRHGLRMAIAL HHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH VVGYAVMQSIHADNGYWILLTTAFVCRPNYGATRLRLVQRIAGTLIGLIATWALMQLFPG HHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TEVQLLLALAAALIFFITRTDRYMLATAGITVMALFCFNLLGDGFVLIWPRLIDTVIGCA CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHH IAAAASFLILPDWQGRRLNQVMATVLASCARYLAQVLEQYASGMRDDLPYRIARRDMHNA HHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCH DAALSVALSNMLREPGRYRRNLEAGFRFLALSNTLLGYLSALGAHRAALDGEHDAGIAQA HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH GDYLQRTLGEIANALSLRQVLPVHDETEELAMADALEQHAVQLPPKQRLVRDQLALTLRL HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH LPKLRAAAVAVTAAPVETTAPKALQGA HHHHHHHHHHHEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]