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The map label for this gene is arpC [H]

Identifier: 66045856

GI number: 66045856

Start: 3177351

End: 3178781

Strand: Direct

Name: arpC [H]

Synonym: Psyr_2620

Alternate gene names: 66045856

Gene position: 3177351-3178781 (Clockwise)

Preceding gene: 66045854

Following gene: 66045857

Centisome position: 52.14

GC content: 63.45

Gene sequence:

>1431_bases
ATGTCTATTGGCAAACCTGCTGGCCACTTCCTGTTGTCGACGCTTCTGGTCTCATTGCTGAGTGGCTGTACATTAGGCCC
GGACTACCAATTGCCTGCGGTGAAGGTTGCCAGCCAGTGGCATGCGCCGCTGCCCTATGGCGCGTCGATGGTCGGACTGC
AGGATTGGTGGCAACAGTTCAATGACCCGGCACTGGCAACCCTGCTGCGTATGGCACAGGCAGACAGCCCGTCTCTCGAT
AAGGCTCTGGCACGCATTGCCCAGGCACGCGCGACGCTGGACGGCAGCGTTGCCGACCGGCTGCCGCAAGTGAGCGGCGG
CGTGAGCAAGTCACGCGCCGGCATCAGGCAGAGCGGGGTGCGCCAGAGCGGTAAGACCTCCGGGGCAACCCTCGATGCAT
CCTGGGAACTGGACCTGTTCGGCAAACTGCGACGCACCGACGAGGCGTCGCGCAATCTGCTCGAAGCACGTGTCAATGAC
TGGCATGACGCTCGTGTATCGCTGGCCGCCGAGGTCGGTGATGACTTTGTGCAGTACCGCGGCTGCCAGATGCTGGTGAA
CGCTTACCGTGATCAGGCGCAATCCCAGGAACAGACCGCACGCCTGACTCGCGTGTCGTTTCAGGCCGGGTTTACCGCCG
CCGCTGATTCATCGTTGAGCGACGCCAGTGCGGCATCCAGTAATGCGACCCTCATCAAACAGCAAGGCGAGTGCGATGTG
CTGCTCAAGAGCCTGGTGGAGCTGACCGGCAGCAACGAGGATCAGGTACGGGAAGTGCTCAGCCATAATCCGGCGAGACT
GCCGCAGCCTGCGTTGCTGGATGTTCGGGAAATACCTGCCAACCTGTTGCGCCAGCGCCCGGACCTGGCGTCCAGCGAAC
GCGAACTGGCCGCCGCGAATGCGAAGATCGGCGCTGCCCAGGCTGATCGTCTGCCCAGCCTGAGCCTGGTTGGCTCGTTC
GAGGTGGGGACCACCACCGGAGTATTCAGCCGCGAATGGAGCCTCGGCCCGCAACTGACTGTTCCGCTGTTCGACGCAGG
CAAGCGCCGGGCGGCAGTGGACTCGGCGCGGGCAGATTATGACTCGGCGCTGGCGACCTACCGGCAAACCCTGCGCACAG
CGGTAATGGAGGTCGAGCAGGCGCTGGTGCGCCTGGACGCGGCGCGGCGTTCGCAAGCCAGTACGCAACGGGCCAGTGAG
GGTTATGAAGCGTCGTTCCAGGCCACAGACCGCAACTGGCAGGCCGGCAATGCCAGCCTGCTGGACCGCGAAGAGGCTCG
ACGCTCGGCGCTGTCGGCAGAAATCGAATTGATCACCGTGCAACAAAATCAGGTTCGCTACTGGATTGCCCTGTACAAGG
CCCTGGGCGGTGGATGGCAGGACAGTCGCGAAGGTTTGGCCGGTGAAACACCGAAGCGGGGCGGCGTATGA

Upstream 100 bases:

>100_bases
CGCTGTAAGAAACCTTGCGACAACGCTCCTGATCGTCCGGATTCTTGCCCCGTTGCTTCCTTTCTCAAGACGCCACTGTT
CCGGAATCTTCGAGAGCTTT

Downstream 100 bases:

>100_bases
GGAAGATACACGTTTATGGGCTGCTGACGCTGGCGGTGTTGGGCGTTTCGGGCTGGCTATTGTCTGGCCGCGCAGAGCCG
CCCCCGGCCGCTGCGGCGCC

Product: RND efflux system, outer membrane lipoprotein, NodT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 476; Mature: 475

Protein sequence:

>476_residues
MSIGKPAGHFLLSTLLVSLLSGCTLGPDYQLPAVKVASQWHAPLPYGASMVGLQDWWQQFNDPALATLLRMAQADSPSLD
KALARIAQARATLDGSVADRLPQVSGGVSKSRAGIRQSGVRQSGKTSGATLDASWELDLFGKLRRTDEASRNLLEARVND
WHDARVSLAAEVGDDFVQYRGCQMLVNAYRDQAQSQEQTARLTRVSFQAGFTAAADSSLSDASAASSNATLIKQQGECDV
LLKSLVELTGSNEDQVREVLSHNPARLPQPALLDVREIPANLLRQRPDLASSERELAAANAKIGAAQADRLPSLSLVGSF
EVGTTTGVFSREWSLGPQLTVPLFDAGKRRAAVDSARADYDSALATYRQTLRTAVMEVEQALVRLDAARRSQASTQRASE
GYEASFQATDRNWQAGNASLLDREEARRSALSAEIELITVQQNQVRYWIALYKALGGGWQDSREGLAGETPKRGGV

Sequences:

>Translated_476_residues
MSIGKPAGHFLLSTLLVSLLSGCTLGPDYQLPAVKVASQWHAPLPYGASMVGLQDWWQQFNDPALATLLRMAQADSPSLD
KALARIAQARATLDGSVADRLPQVSGGVSKSRAGIRQSGVRQSGKTSGATLDASWELDLFGKLRRTDEASRNLLEARVND
WHDARVSLAAEVGDDFVQYRGCQMLVNAYRDQAQSQEQTARLTRVSFQAGFTAAADSSLSDASAASSNATLIKQQGECDV
LLKSLVELTGSNEDQVREVLSHNPARLPQPALLDVREIPANLLRQRPDLASSERELAAANAKIGAAQADRLPSLSLVGSF
EVGTTTGVFSREWSLGPQLTVPLFDAGKRRAAVDSARADYDSALATYRQTLRTAVMEVEQALVRLDAARRSQASTQRASE
GYEASFQATDRNWQAGNASLLDREEARRSALSAEIELITVQQNQVRYWIALYKALGGGWQDSREGLAGETPKRGGV
>Mature_475_residues
SIGKPAGHFLLSTLLVSLLSGCTLGPDYQLPAVKVASQWHAPLPYGASMVGLQDWWQQFNDPALATLLRMAQADSPSLDK
ALARIAQARATLDGSVADRLPQVSGGVSKSRAGIRQSGVRQSGKTSGATLDASWELDLFGKLRRTDEASRNLLEARVNDW
HDARVSLAAEVGDDFVQYRGCQMLVNAYRDQAQSQEQTARLTRVSFQAGFTAAADSSLSDASAASSNATLIKQQGECDVL
LKSLVELTGSNEDQVREVLSHNPARLPQPALLDVREIPANLLRQRPDLASSERELAAANAKIGAAQADRLPSLSLVGSFE
VGTTTGVFSREWSLGPQLTVPLFDAGKRRAAVDSARADYDSALATYRQTLRTAVMEVEQALVRLDAARRSQASTQRASEG
YEASFQATDRNWQAGNASLLDREEARRSALSAEIELITVQQNQVRYWIALYKALGGGWQDSREGLAGETPKRGGV

Specific function: The outer membrane component of an antibiotic efflux pump. Confers resistance to numerous structurally unrelated antibiotics such as carbenicillin, chloramphenicol, erythromycin, novobiocin, streptomycin and tetracycline. Is not involved in organic solven

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=464, Percent_Identity=29.7413793103448, Blast_Score=138, Evalue=7e-34,
Organism=Escherichia coli, GI2367348, Length=493, Percent_Identity=24.3407707910751, Blast_Score=87, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 51409; Mature: 51278

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIGKPAGHFLLSTLLVSLLSGCTLGPDYQLPAVKVASQWHAPLPYGASMVGLQDWWQQF
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
NDPALATLLRMAQADSPSLDKALARIAQARATLDGSVADRLPQVSGGVSKSRAGIRQSGV
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHCCCCHHHHHHHHHHHC
RQSGKTSGATLDASWELDLFGKLRRTDEASRNLLEARVNDWHDARVSLAAEVGDDFVQYR
CCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GCQMLVNAYRDQAQSQEQTARLTRVSFQAGFTAAADSSLSDASAASSNATLIKQQGECDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHCCCCCCEEEECCCCHHH
LLKSLVELTGSNEDQVREVLSHNPARLPQPALLDVREIPANLLRQRPDLASSERELAAAN
HHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHC
AKIGAAQADRLPSLSLVGSFEVGTTTGVFSREWSLGPQLTVPLFDAGKRRAAVDSARADY
CCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEHHCCCCHHHHHHHHHHHH
DSALATYRQTLRTAVMEVEQALVRLDAARRSQASTQRASEGYEASFQATDRNWQAGNASL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHH
LDREEARRSALSAEIELITVQQNQVRYWIALYKALGGGWQDSREGLAGETPKRGGV
HHHHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SIGKPAGHFLLSTLLVSLLSGCTLGPDYQLPAVKVASQWHAPLPYGASMVGLQDWWQQF
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
NDPALATLLRMAQADSPSLDKALARIAQARATLDGSVADRLPQVSGGVSKSRAGIRQSGV
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHCCCCHHHHHHHHHHHC
RQSGKTSGATLDASWELDLFGKLRRTDEASRNLLEARVNDWHDARVSLAAEVGDDFVQYR
CCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GCQMLVNAYRDQAQSQEQTARLTRVSFQAGFTAAADSSLSDASAASSNATLIKQQGECDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHCCCCCCEEEECCCCHHH
LLKSLVELTGSNEDQVREVLSHNPARLPQPALLDVREIPANLLRQRPDLASSERELAAAN
HHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHC
AKIGAAQADRLPSLSLVGSFEVGTTTGVFSREWSLGPQLTVPLFDAGKRRAAVDSARADY
CCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEHHCCCCHHHHHHHHHHHH
DSALATYRQTLRTAVMEVEQALVRLDAARRSQASTQRASEGYEASFQATDRNWQAGNASL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHH
LDREEARRSALSAEIELITVQQNQVRYWIALYKALGGGWQDSREGLAGETPKRGGV
HHHHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11160799 [H]