| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is gdh [H]
Identifier: 66045537
GI number: 66045537
Start: 2669287
End: 2670087
Strand: Direct
Name: gdh [H]
Synonym: Psyr_2297
Alternate gene names: 66045537
Gene position: 2669287-2670087 (Clockwise)
Preceding gene: 66045536
Following gene: 66045538
Centisome position: 43.8
GC content: 60.17
Gene sequence:
>801_bases ATGCACATCTCACTCAAGCAACAAGTTGCAATCGTTACCGGCGCCAGTTCCGGTCTGGGCGCAGGTGCCGCACGCGCGCT GGCAGAGGCCGGTGCCGCCGTGGTGATCAACTACAACTCCAAGCCTGAACCTGCCGAGAAACTCGCCGAAGAGATTCGTG CGGCCGGGGGCAAGGCGCTGGCTGTGGGTGCCGACGTTTCGAAGGAAGAAGACGTCGAGCGGCTGTTTGCAAAGACCATC GAACATTTCGGCGCGCTGGATATTCTGGTCGCCAATTCCGGCTTGCAAAAGGACGCGTCGATCGTCGACATGTCCCTCGA AGACTGGAATACCGTCATCAACGTCAATCTGACCGGGCAGTTTCTCTGCGCCCGCGCAGCATTGCGCCAGTTCATCAAGC AGGGCATGCGCCCTGAAGTGTCACGGGCCATGGGCAAGATCATTCACATGAGCTCGGTGCACCAGCTGATTCCATGGGCC GGGCACGTCAATTACGCAGCGTCCAAGGGCGGCGTCGACCTGTTGATGCGCAGCATCGCTCAGGAAGTCGGCGAACTGAA GATTCGCGTCAACAGCGTTGCACCGGGTGCCATCCGCACGCCGATCAATGCCGATGCACGCAAGGGCGACGCCGAGAAGG AAATGCTCAAGCTGATCCCTTATGGTCGTATCGGCGAGCCGGAAGACGTCGCCAATGCCGTGCTCTGGCTGGCTTCCGAT GCCTCGGATTATGTGCACGGCACCACCCTGTTCATCGACGGCGGCATGACCCTCTATCCGGAGTTCCGTGGCAATGGCTG A
Upstream 100 bases:
>100_bases CATTCACACCTCGCAGCCCAACCCTGCGCCATAACCTGCACTGAACTTAATTTCAGCCTCGCCAGTCAGCACTAGTACGC TTACTCCGAGGCTGAAATTG
Downstream 100 bases:
>100_bases CTTTCCCGCAGAGGCGCAAAACCGTATCGAGGATCACGGCATCATCGGCGACATGCGCAGTGCTGCGCTGATTGCCAACA CCGGCAGCATCGATTTCTGC
Product: Short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 266; Mature: 266
Protein sequence:
>266_residues MHISLKQQVAIVTGASSGLGAGAARALAEAGAAVVINYNSKPEPAEKLAEEIRAAGGKALAVGADVSKEEDVERLFAKTI EHFGALDILVANSGLQKDASIVDMSLEDWNTVINVNLTGQFLCARAALRQFIKQGMRPEVSRAMGKIIHMSSVHQLIPWA GHVNYAASKGGVDLLMRSIAQEVGELKIRVNSVAPGAIRTPINADARKGDAEKEMLKLIPYGRIGEPEDVANAVLWLASD ASDYVHGTTLFIDGGMTLYPEFRGNG
Sequences:
>Translated_266_residues MHISLKQQVAIVTGASSGLGAGAARALAEAGAAVVINYNSKPEPAEKLAEEIRAAGGKALAVGADVSKEEDVERLFAKTI EHFGALDILVANSGLQKDASIVDMSLEDWNTVINVNLTGQFLCARAALRQFIKQGMRPEVSRAMGKIIHMSSVHQLIPWA GHVNYAASKGGVDLLMRSIAQEVGELKIRVNSVAPGAIRTPINADARKGDAEKEMLKLIPYGRIGEPEDVANAVLWLASD ASDYVHGTTLFIDGGMTLYPEFRGNG >Mature_266_residues MHISLKQQVAIVTGASSGLGAGAARALAEAGAAVVINYNSKPEPAEKLAEEIRAAGGKALAVGADVSKEEDVERLFAKTI EHFGALDILVANSGLQKDASIVDMSLEDWNTVINVNLTGQFLCARAALRQFIKQGMRPEVSRAMGKIIHMSSVHQLIPWA GHVNYAASKGGVDLLMRSIAQEVGELKIRVNSVAPGAIRTPINADARKGDAEKEMLKLIPYGRIGEPEDVANAVLWLASD ASDYVHGTTLFIDGGMTLYPEFRGNG
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI15277342, Length=261, Percent_Identity=35.2490421455939, Blast_Score=133, Evalue=2e-31, Organism=Homo sapiens, GI40254992, Length=252, Percent_Identity=36.1111111111111, Blast_Score=131, Evalue=5e-31, Organism=Homo sapiens, GI32483357, Length=256, Percent_Identity=31.640625, Blast_Score=119, Evalue=2e-27, Organism=Homo sapiens, GI19923817, Length=270, Percent_Identity=31.4814814814815, Blast_Score=112, Evalue=3e-25, Organism=Homo sapiens, GI5031737, Length=260, Percent_Identity=32.3076923076923, Blast_Score=105, Evalue=6e-23, Organism=Homo sapiens, GI4504505, Length=246, Percent_Identity=32.9268292682927, Blast_Score=104, Evalue=7e-23, Organism=Homo sapiens, GI109715829, Length=245, Percent_Identity=31.4285714285714, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI7705925, Length=257, Percent_Identity=30.3501945525292, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI59889578, Length=242, Percent_Identity=29.7520661157025, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI66933014, Length=202, Percent_Identity=32.1782178217822, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI4758504, Length=267, Percent_Identity=28.8389513108614, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI126723750, Length=259, Percent_Identity=28.1853281853282, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI33667109, Length=206, Percent_Identity=32.5242718446602, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI31542939, Length=254, Percent_Identity=29.5275590551181, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI10190704, Length=264, Percent_Identity=28.7878787878788, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI4503301, Length=256, Percent_Identity=28.515625, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI209862901, Length=210, Percent_Identity=29.5238095238095, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI19923983, Length=210, Percent_Identity=29.5238095238095, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI40254986, Length=195, Percent_Identity=31.2820512820513, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI224922801, Length=185, Percent_Identity=32.4324324324324, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI20149619, Length=239, Percent_Identity=27.6150627615063, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI126723191, Length=190, Percent_Identity=28.4210526315789, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI83715985, Length=267, Percent_Identity=26.9662921348315, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI7706318, Length=216, Percent_Identity=25, Blast_Score=65, Evalue=9e-11, Organism=Escherichia coli, GI1788459, Length=256, Percent_Identity=35.15625, Blast_Score=154, Evalue=7e-39, Organism=Escherichia coli, GI1789208, Length=259, Percent_Identity=37.8378378378378, Blast_Score=150, Evalue=1e-37, Organism=Escherichia coli, GI2367175, Length=250, Percent_Identity=36.4, Blast_Score=141, Evalue=4e-35, Organism=Escherichia coli, GI1787335, Length=256, Percent_Identity=35.15625, Blast_Score=140, Evalue=1e-34, Organism=Escherichia coli, GI87082100, Length=265, Percent_Identity=36.6037735849057, Blast_Score=137, Evalue=8e-34, Organism=Escherichia coli, GI1790717, Length=255, Percent_Identity=32.156862745098, Blast_Score=131, Evalue=5e-32, Organism=Escherichia coli, GI87082160, Length=255, Percent_Identity=34.1176470588235, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI1787905, Length=257, Percent_Identity=30.7392996108949, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1789057, Length=265, Percent_Identity=30.188679245283, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI2367365, Length=254, Percent_Identity=30.7086614173228, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1789378, Length=257, Percent_Identity=30.7392996108949, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1786812, Length=256, Percent_Identity=28.515625, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1787820, Length=236, Percent_Identity=28.8135593220339, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1787526, Length=262, Percent_Identity=26.7175572519084, Blast_Score=70, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17555706, Length=253, Percent_Identity=37.9446640316205, Blast_Score=143, Evalue=9e-35, Organism=Caenorhabditis elegans, GI25147288, Length=254, Percent_Identity=35.8267716535433, Blast_Score=142, Evalue=1e-34, Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=33.0645161290323, Blast_Score=121, Evalue=4e-28, Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=29.4117647058824, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17562910, Length=275, Percent_Identity=30.5454545454545, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17560332, Length=280, Percent_Identity=30.7142857142857, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17562906, Length=270, Percent_Identity=30.7407407407407, Blast_Score=107, Evalue=6e-24, Organism=Caenorhabditis elegans, GI17560676, Length=254, Percent_Identity=29.5275590551181, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17551412, Length=279, Percent_Identity=31.5412186379928, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17561402, Length=255, Percent_Identity=31.3725490196078, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI71994604, Length=257, Percent_Identity=29.5719844357977, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17562908, Length=268, Percent_Identity=31.3432835820896, Blast_Score=102, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17559104, Length=273, Percent_Identity=29.6703296703297, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17538480, Length=276, Percent_Identity=29.7101449275362, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17531453, Length=277, Percent_Identity=31.0469314079422, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17560150, Length=268, Percent_Identity=29.4776119402985, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=30.3030303030303, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17562904, Length=273, Percent_Identity=29.3040293040293, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17568967, Length=205, Percent_Identity=32.1951219512195, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17508651, Length=260, Percent_Identity=30.7692307692308, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17560220, Length=273, Percent_Identity=31.1355311355311, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17544670, Length=273, Percent_Identity=28.9377289377289, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17565030, Length=285, Percent_Identity=31.2280701754386, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI193204405, Length=275, Percent_Identity=29.4545454545455, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17538486, Length=274, Percent_Identity=29.1970802919708, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17536025, Length=263, Percent_Identity=30.4182509505703, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17538182, Length=262, Percent_Identity=29.7709923664122, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17536651, Length=263, Percent_Identity=28.1368821292776, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI86565303, Length=218, Percent_Identity=32.1100917431193, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17555612, Length=218, Percent_Identity=33.4862385321101, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI71997099, Length=218, Percent_Identity=31.651376146789, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=27.9245283018868, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17563726, Length=264, Percent_Identity=26.8939393939394, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71982365, Length=194, Percent_Identity=27.319587628866, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17561272, Length=259, Percent_Identity=29.7297297297297, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17564282, Length=200, Percent_Identity=29, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17558628, Length=195, Percent_Identity=27.1794871794872, Blast_Score=64, Evalue=1e-10, Organism=Saccharomyces cerevisiae, GI6324126, Length=272, Percent_Identity=31.9852941176471, Blast_Score=118, Evalue=9e-28, Organism=Saccharomyces cerevisiae, GI6322861, Length=206, Percent_Identity=35.4368932038835, Blast_Score=102, Evalue=5e-23, Organism=Drosophila melanogaster, GI21357041, Length=261, Percent_Identity=36.3984674329502, Blast_Score=136, Evalue=1e-32, Organism=Drosophila melanogaster, GI24639444, Length=256, Percent_Identity=33.203125, Blast_Score=134, Evalue=8e-32, Organism=Drosophila melanogaster, GI23397609, Length=259, Percent_Identity=33.5907335907336, Blast_Score=130, Evalue=7e-31, Organism=Drosophila melanogaster, GI28571526, Length=260, Percent_Identity=35.7692307692308, Blast_Score=130, Evalue=8e-31, Organism=Drosophila melanogaster, GI24644339, Length=257, Percent_Identity=34.2412451361868, Blast_Score=130, Evalue=1e-30, Organism=Drosophila melanogaster, GI21355319, Length=255, Percent_Identity=31.3725490196078, Blast_Score=111, Evalue=4e-25, Organism=Drosophila melanogaster, GI18859837, Length=198, Percent_Identity=36.3636363636364, Blast_Score=101, Evalue=7e-22, Organism=Drosophila melanogaster, GI17737361, Length=263, Percent_Identity=30.0380228136882, Blast_Score=98, Evalue=7e-21, Organism=Drosophila melanogaster, GI24643142, Length=259, Percent_Identity=30.8880308880309, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI24644337, Length=208, Percent_Identity=31.25, Blast_Score=95, Evalue=5e-20, Organism=Drosophila melanogaster, GI24641232, Length=248, Percent_Identity=31.0483870967742, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI24648944, Length=237, Percent_Identity=29.535864978903, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI24663911, Length=257, Percent_Identity=28.4046692607004, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI116007236, Length=257, Percent_Identity=28.0155642023346, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI116007234, Length=253, Percent_Identity=30.4347826086957, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI21357673, Length=211, Percent_Identity=29.3838862559242, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI281364494, Length=264, Percent_Identity=28.4090909090909, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI28571387, Length=255, Percent_Identity=27.0588235294118, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24649181, Length=210, Percent_Identity=29.0476190476191, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI21358495, Length=242, Percent_Identity=24.7933884297521, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24641388, Length=242, Percent_Identity=28.099173553719, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI21355631, Length=179, Percent_Identity=29.0502793296089, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24580925, Length=213, Percent_Identity=28.169014084507, Blast_Score=64, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.47 [H]
Molecular weight: Translated: 28272; Mature: 28272
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHISLKQQVAIVTGASSGLGAGAARALAEAGAAVVINYNSKPEPAEKLAEEIRAAGGKAL CCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCEE AVGADVSKEEDVERLFAKTIEHFGALDILVANSGLQKDASIVDMSLEDWNTVINVNLTGQ EECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECHH FLCARAALRQFIKQGMRPEVSRAMGKIIHMSSVHQLIPWAGHVNYAASKGGVDLLMRSIA HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH QEVGELKIRVNSVAPGAIRTPINADARKGDAEKEMLKLIPYGRIGEPEDVANAVLWLASD HHHHHEEEEEECCCCCCEECCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHEECC ASDYVHGTTLFIDGGMTLYPEFRGNG CCCCCCCEEEEEECCEEEECCCCCCC >Mature Secondary Structure MHISLKQQVAIVTGASSGLGAGAARALAEAGAAVVINYNSKPEPAEKLAEEIRAAGGKAL CCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCEE AVGADVSKEEDVERLFAKTIEHFGALDILVANSGLQKDASIVDMSLEDWNTVINVNLTGQ EECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECHH FLCARAALRQFIKQGMRPEVSRAMGKIIHMSSVHQLIPWAGHVNYAASKGGVDLLMRSIA HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH QEVGELKIRVNSVAPGAIRTPINADARKGDAEKEMLKLIPYGRIGEPEDVANAVLWLASD HHHHHEEEEEECCCCCCEECCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHEECC ASDYVHGTTLFIDGGMTLYPEFRGNG CCCCCCCEEEEEECCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3082854; 8969502; 9384377 [H]