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The map label for this gene is rbsC [H]

Identifier: 66045393

GI number: 66045393

Start: 2509226

End: 2510218

Strand: Direct

Name: rbsC [H]

Synonym: Psyr_2153

Alternate gene names: 66045393

Gene position: 2509226-2510218 (Clockwise)

Preceding gene: 66045392

Following gene: 66045394

Centisome position: 41.18

GC content: 61.63

Gene sequence:

>993_bases
ATGAAAAATACTCCTTCTCCGACGCTGACTGTGCCAGTCCGTCGCGGCGGCAACTACTTTGGCCTGGGTACCTACATCGG
GCTGGCCGGTGCGTTGCTGGTGATGATCGTGCTGTTCTCGCTGCTCAGCGATCACTTCCTGTCCTACCAGACCTTCAGCA
TGCTCGCCAACCAGATCCCGGACCTGATGGTGCTGTCGGTCGGCATGACGCTGATCCTCATCATCGGCGGCATCGACCTG
TCGGTCGGCTCGGTGCTGGCGCTGGCTGCTTCGGCGGTCAGTGTGGCAATCCTCGGCTGGGGCTGGAGCGTGTTTCCGGC
GGCGTTGCTGGGCATTGCCTGTGCGACGCTGGCGGGTACGATCACCGGCTCGATTACGGTTGCCTGGCGCATCCCTTCGT
TCATCGTGTCTCTGGGCGTGCTGGAAATGGCTCGTGGTGCGGCCTATCAGATGACCAATTCGCGTACCGCCTACATCGGT
GATTCGTTCGCCTGGCTGTCCGATCCGATTGCCTTTGGCATTGCGCCGTCTTTCATCATCGCGTTGCTGATCATCTTCGT
CGCTCAGGCGGTACTGACCCGGACCGTTTTCGGTCGCTACCTGATCGGCATCGGCACCAATGAAGAGGCCGTGCGTCTGG
CGGGTATCAATCCCAAGCCTTACAAGATTCTGGTGTTCTCGCTGATGGGGCTGCTGGCCGGTGTCGCGGCACTGTTTCAG
ATATCCAGGCTGGAAGCGGCCGATCCGAATGCCGGTGCCGGGCTTGAGCTGCAGGTCATTGCGGCAGTGGTGATTGGCGG
TACCAGCCTGATGGGCGGACGCGGTTCGATCATCAGCACCTTTTTCGGTGTGCTGATCATTTCCGTGCTGGCCGCGGGCC
TGGCGCAGATCGGTGCGACCGAGCCGACCAAGCGGATCATCACCGGTGCGGTGATCGTGATTGCTGTGGTGCTGGACACC
TACCGCAGCCACCGGGCTCGGCGCCAGGGCTGA

Upstream 100 bases:

>100_bases
AGCGCGATAGCTGGACCCAGGACCAATTGCTGGCCGCTGCCTTCGCCGGTTATCAGAAACGTGACGCGCTGCTCAATGAT
GCGGCGCCCAGGAACAACTC

Downstream 100 bases:

>100_bases
TATGGCAACCATCAAGGATGTCGCGGCCCTGGCGGGGATCTCGTACACCACGGTTTCCCACGTGTTGAACAATACCCGGC
CGGTGAGCGAGCCGGTCAGG

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MKNTPSPTLTVPVRRGGNYFGLGTYIGLAGALLVMIVLFSLLSDHFLSYQTFSMLANQIPDLMVLSVGMTLILIIGGIDL
SVGSVLALAASAVSVAILGWGWSVFPAALLGIACATLAGTITGSITVAWRIPSFIVSLGVLEMARGAAYQMTNSRTAYIG
DSFAWLSDPIAFGIAPSFIIALLIIFVAQAVLTRTVFGRYLIGIGTNEEAVRLAGINPKPYKILVFSLMGLLAGVAALFQ
ISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSIISTFFGVLIISVLAAGLAQIGATEPTKRIITGAVIVIAVVLDT
YRSHRARRQG

Sequences:

>Translated_330_residues
MKNTPSPTLTVPVRRGGNYFGLGTYIGLAGALLVMIVLFSLLSDHFLSYQTFSMLANQIPDLMVLSVGMTLILIIGGIDL
SVGSVLALAASAVSVAILGWGWSVFPAALLGIACATLAGTITGSITVAWRIPSFIVSLGVLEMARGAAYQMTNSRTAYIG
DSFAWLSDPIAFGIAPSFIIALLIIFVAQAVLTRTVFGRYLIGIGTNEEAVRLAGINPKPYKILVFSLMGLLAGVAALFQ
ISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSIISTFFGVLIISVLAAGLAQIGATEPTKRIITGAVIVIAVVLDT
YRSHRARRQG
>Mature_330_residues
MKNTPSPTLTVPVRRGGNYFGLGTYIGLAGALLVMIVLFSLLSDHFLSYQTFSMLANQIPDLMVLSVGMTLILIIGGIDL
SVGSVLALAASAVSVAILGWGWSVFPAALLGIACATLAGTITGSITVAWRIPSFIVSLGVLEMARGAAYQMTNSRTAYIG
DSFAWLSDPIAFGIAPSFIIALLIIFVAQAVLTRTVFGRYLIGIGTNEEAVRLAGINPKPYKILVFSLMGLLAGVAALFQ
ISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSIISTFFGVLIISVLAAGLAQIGATEPTKRIITGAVIVIAVVLDT
YRSHRARRQG

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=298, Percent_Identity=37.5838926174497, Blast_Score=166, Evalue=3e-42,
Organism=Escherichia coli, GI1788896, Length=310, Percent_Identity=33.5483870967742, Blast_Score=137, Evalue=7e-34,
Organism=Escherichia coli, GI145693152, Length=319, Percent_Identity=31.6614420062696, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1790524, Length=292, Percent_Identity=30.8219178082192, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789992, Length=134, Percent_Identity=42.5373134328358, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI87082395, Length=253, Percent_Identity=32.4110671936759, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI145693214, Length=240, Percent_Identity=32.5, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787793, Length=299, Percent_Identity=30.4347826086957, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787794, Length=312, Percent_Identity=26.2820512820513, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788471, Length=326, Percent_Identity=27.9141104294479, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34357; Mature: 34357

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNTPSPTLTVPVRRGGNYFGLGTYIGLAGALLVMIVLFSLLSDHFLSYQTFSMLANQIP
CCCCCCCEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DLMVLSVGMTLILIIGGIDLSVGSVLALAASAVSVAILGWGWSVFPAALLGIACATLAGT
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
ITGSITVAWRIPSFIVSLGVLEMARGAAYQMTNSRTAYIGDSFAWLSDPIAFGIAPSFII
HCCCEEEEEEHHHHHHHHHHHHHHCCCCEEECCCCEEEECCCHHHHHCCHHHCCCHHHHH
ALLIIFVAQAVLTRTVFGRYLIGIGTNEEAVRLAGINPKPYKILVFSLMGLLAGVAALFQ
HHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
ISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSIISTFFGVLIISVLAAGLAQIGAT
HHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
EPTKRIITGAVIVIAVVLDTYRSHRARRQG
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKNTPSPTLTVPVRRGGNYFGLGTYIGLAGALLVMIVLFSLLSDHFLSYQTFSMLANQIP
CCCCCCCEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DLMVLSVGMTLILIIGGIDLSVGSVLALAASAVSVAILGWGWSVFPAALLGIACATLAGT
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
ITGSITVAWRIPSFIVSLGVLEMARGAAYQMTNSRTAYIGDSFAWLSDPIAFGIAPSFII
HCCCEEEEEEHHHHHHHHHHHHHHCCCCEEECCCCEEEECCCHHHHHCCHHHCCCHHHHH
ALLIIFVAQAVLTRTVFGRYLIGIGTNEEAVRLAGINPKPYKILVFSLMGLLAGVAALFQ
HHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
ISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSIISTFFGVLIISVLAAGLAQIGAT
HHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
EPTKRIITGAVIVIAVVLDTYRSHRARRQG
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]