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The map label for this gene is ycdC [C]

Identifier: 66045371

GI number: 66045371

Start: 2491504

End: 2492160

Strand: Direct

Name: ycdC [C]

Synonym: Psyr_2131

Alternate gene names: 66045371

Gene position: 2491504-2492160 (Clockwise)

Preceding gene: 66045370

Following gene: 66045373

Centisome position: 40.89

GC content: 55.56

Gene sequence:

>657_bases
ATGAAAACAACTGACGACTCCGTTGCCGTTGCGTCGAAAGGGCGCAAGAACAATCCGGAAAAGACCCGCGAAGACATTCT
GCAGGCCGCCGTTGCCGAGTTTGTCGCCCATGGCCTGTCGGGTGCGCGTGTCGATGCCATTGCCGAGCGCACCAAGACCT
CGAAACGGATGATCTATTACTACTTCGGCAGCAAGGAGCAGCTGTACGTCGAAGTGCTGGAAAAACTCTACGGCGCGATT
CGCAACACCGAGAGCCAGCTCAATCTGTCCGAACTCGAGCCTGTGGAAGCGATTCATCGCGTGGTCGAGTTCACCTTCGA
TCACCACGACAGCAATGTCGATTTCGTGCGCATCGTGTGCATCGAAAACATCCATAACGGCGAGAACGTCAAACAGTCCG
AGTCGATTCAGGCCAAGAGCCAGAACATCATCAGGGCGCTCGACGGCATCCTGCGTCGTGGTGAAGCCAGCGGCCTGTTT
CGTGACGGCGTTCATCCGGTTGACCTGCACCTGATGATCAGCTCGTTCTGCTTTTACCGGATCTCCAACCGCCATACCTT
CAGCGAAATCTTTCAGATCGAGCTGTGGAGCGAGGAGGTCAAACAGCGTCACAAGGCAATGATCTGCGACGCTGTGTTGC
GTTATCTCAAGCGCTGA

Upstream 100 bases:

>100_bases
CCGATTGCAGGGCCGCTGCGAGGGTTCGACGCCCTCGCGGCTTCCCTCGGTTGCCGGTCGGCTTCATACTCCGCGCATCA
CTCGTGGTCATGAGCCAACA

Downstream 100 bases:

>100_bases
TGTTTACAACGTGTGGAAGTGCGCCATCATCCGCTCTGCATCGGCGGACTGGCCACTGAACAGTTCGAAGGCCTTGACCG
CCTGAAACACCGCCATGGTG

Product: regulatory protein, TetR

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR Family Regulatory Protein; Transcriptional Regulator Protein; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator TetR/ArcR Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator Tetr Family; Regulatory Protein; TetR-Family Transcriptional Regulator; TetR-Family Transcriptional Regulatory Protein; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; Transcription Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MKTTDDSVAVASKGRKNNPEKTREDILQAAVAEFVAHGLSGARVDAIAERTKTSKRMIYYYFGSKEQLYVEVLEKLYGAI
RNTESQLNLSELEPVEAIHRVVEFTFDHHDSNVDFVRIVCIENIHNGENVKQSESIQAKSQNIIRALDGILRRGEASGLF
RDGVHPVDLHLMISSFCFYRISNRHTFSEIFQIELWSEEVKQRHKAMICDAVLRYLKR

Sequences:

>Translated_218_residues
MKTTDDSVAVASKGRKNNPEKTREDILQAAVAEFVAHGLSGARVDAIAERTKTSKRMIYYYFGSKEQLYVEVLEKLYGAI
RNTESQLNLSELEPVEAIHRVVEFTFDHHDSNVDFVRIVCIENIHNGENVKQSESIQAKSQNIIRALDGILRRGEASGLF
RDGVHPVDLHLMISSFCFYRISNRHTFSEIFQIELWSEEVKQRHKAMICDAVLRYLKR
>Mature_218_residues
MKTTDDSVAVASKGRKNNPEKTREDILQAAVAEFVAHGLSGARVDAIAERTKTSKRMIYYYFGSKEQLYVEVLEKLYGAI
RNTESQLNLSELEPVEAIHRVVEFTFDHHDSNVDFVRIVCIENIHNGENVKQSESIQAKSQNIIRALDGILRRGEASGLF
RDGVHPVDLHLMISSFCFYRISNRHTFSEIFQIELWSEEVKQRHKAMICDAVLRYLKR

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25030; Mature: 25030

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTTDDSVAVASKGRKNNPEKTREDILQAAVAEFVAHGLSGARVDAIAERTKTSKRMIYY
CCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEE
YFGSKEQLYVEVLEKLYGAIRNTESQLNLSELEPVEAIHRVVEFTFDHHDSNVDFVRIVC
EECCCCHHHHHHHHHHHHHHHCCHHHCCHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
IENIHNGENVKQSESIQAKSQNIIRALDGILRRGEASGLFRDGVHPVDLHLMISSFCFYR
ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHH
ISNRHTFSEIFQIELWSEEVKQRHKAMICDAVLRYLKR
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKTTDDSVAVASKGRKNNPEKTREDILQAAVAEFVAHGLSGARVDAIAERTKTSKRMIYY
CCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEE
YFGSKEQLYVEVLEKLYGAIRNTESQLNLSELEPVEAIHRVVEFTFDHHDSNVDFVRIVC
EECCCCHHHHHHHHHHHHHHHCCHHHCCHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
IENIHNGENVKQSESIQAKSQNIIRALDGILRRGEASGLFRDGVHPVDLHLMISSFCFYR
ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHH
ISNRHTFSEIFQIELWSEEVKQRHKAMICDAVLRYLKR
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA