| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is sam [H]
Identifier: 66045368
GI number: 66045368
Start: 2486066
End: 2486953
Strand: Direct
Name: sam [H]
Synonym: Psyr_2128
Alternate gene names: 66045368
Gene position: 2486066-2486953 (Clockwise)
Preceding gene: 66045366
Following gene: 66045370
Centisome position: 40.8
GC content: 61.26
Gene sequence:
>888_bases ATGAGCACTGCCAGCACGCCGTCGTCCGGCGTCAATCAACCTCTCAAAGGTATAGGCTTCATTCTTCTGGCGACCTTCCT GTTTGCCAGTCACGACACCCTGTCCAAGTACCTGTCCGGCTTCTATCCGATCATTCTGGTGGTTTGGGCGCGCTATCTGG TGCACACGCTGTTGATGGCCTGCATTTTCATGCCTTCAGCGGGGTTGCGAGTGTTGCGCACCAAAAGGCCCGGCCTGCAG GTCTTGCGCGCACTGGCGCTGCTGGGCACCAGTCTGCTGTTTACCAGCAGCCTGATGTTCATCCCGCAGGCAGAGGCGAC CGCGGTCAACTTTCTTGCGCCGTTGCTGGTCACCGCGTTATCGGTGCCGCTGCTGCACGAGCGTGTAACGCGCGGCCAGT GGATTGCGGTGGTGGTAGGGTTTGTCGGGGTGATGATCATCATTCATCCGGGCGGCGAGCTGTTTACCCCGGCAATTCTG CTGCCGCTGTCGTCAGCCTTGTGTTTTGCGCTGTATCAACTCCTGACGCGGCTGGTCAGCCCGTTCGACAGCCCGACCAC CAGCAACTTTTTCGCCGGGCTGTTCAATACCCTGTTGATGAGTGCGCTGGTGCCGTTCTTCTGGGAAGTGCCAGCGCTCA AGCACCTGCCGTTTCTGCTGGCGCTCGGCGCGTGTGGCATGTCGGCGCATTTGCTGCTGACCCAGGCCTTCCGCTTCGCC GCCCCGGCCATGCTTGCGCCGTTCAGTTATTGCCAGATCGTGTTTGCCGGACTGCTGGGCTACCTGGTCTTCGACCACAC CCCGTCCCCGACCGCGCAGGCCGGCATCGCCATCATCTGCCTCAGCGGTCTGGCAGCAGCGTGGCAACAGCGACGTAAGG GTGGGTAA
Upstream 100 bases:
>100_bases GAGAAGCCGCAAACGTGTGTGCGATGCTCACGGGTAACTATGGGTAGAGAGCGTGTTCGGCCACGGTGTCGGGCTGCTGA AACTTGAACAAGGAAGCGTA
Downstream 100 bases:
>100_bases CTACCGGAGCTGAAGATCCGATTGACGCGTATGCCGATGTTCAGTTGGCATGTTTTTCCTGACGCCCTGCGTCGCAGCAC AATGTCATGCTGCGTCTGCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 295; Mature: 294
Protein sequence:
>295_residues MSTASTPSSGVNQPLKGIGFILLATFLFASHDTLSKYLSGFYPIILVVWARYLVHTLLMACIFMPSAGLRVLRTKRPGLQ VLRALALLGTSLLFTSSLMFIPQAEATAVNFLAPLLVTALSVPLLHERVTRGQWIAVVVGFVGVMIIIHPGGELFTPAIL LPLSSALCFALYQLLTRLVSPFDSPTTSNFFAGLFNTLLMSALVPFFWEVPALKHLPFLLALGACGMSAHLLLTQAFRFA APAMLAPFSYCQIVFAGLLGYLVFDHTPSPTAQAGIAIICLSGLAAAWQQRRKGG
Sequences:
>Translated_295_residues MSTASTPSSGVNQPLKGIGFILLATFLFASHDTLSKYLSGFYPIILVVWARYLVHTLLMACIFMPSAGLRVLRTKRPGLQ VLRALALLGTSLLFTSSLMFIPQAEATAVNFLAPLLVTALSVPLLHERVTRGQWIAVVVGFVGVMIIIHPGGELFTPAIL LPLSSALCFALYQLLTRLVSPFDSPTTSNFFAGLFNTLLMSALVPFFWEVPALKHLPFLLALGACGMSAHLLLTQAFRFA APAMLAPFSYCQIVFAGLLGYLVFDHTPSPTAQAGIAIICLSGLAAAWQQRRKGG >Mature_294_residues STASTPSSGVNQPLKGIGFILLATFLFASHDTLSKYLSGFYPIILVVWARYLVHTLLMACIFMPSAGLRVLRTKRPGLQV LRALALLGTSLLFTSSLMFIPQAEATAVNFLAPLLVTALSVPLLHERVTRGQWIAVVVGFVGVMIIIHPGGELFTPAILL PLSSALCFALYQLLTRLVSPFDSPTTSNFFAGLFNTLLMSALVPFFWEVPALKHLPFLLALGACGMSAHLLLTQAFRFAA PAMLAPFSYCQIVFAGLLGYLVFDHTPSPTAQAGIAIICLSGLAAAWQQRRKGG
Specific function: Transports S-adenosylmethionine [H]
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 31753; Mature: 31622
Theoretical pI: Translated: 9.97; Mature: 9.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTASTPSSGVNQPLKGIGFILLATFLFASHDTLSKYLSGFYPIILVVWARYLVHTLLMA CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CIFMPSAGLRVLRTKRPGLQVLRALALLGTSLLFTSSLMFIPQAEATAVNFLAPLLVTAL HHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH SVPLLHERVTRGQWIAVVVGFVGVMIIIHPGGELFTPAILLPLSSALCFALYQLLTRLVS HHHHHHHHHHCCHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC PFDSPTTSNFFAGLFNTLLMSALVPFFWEVPALKHLPFLLALGACGMSAHLLLTQAFRFA CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH APAMLAPFSYCQIVFAGLLGYLVFDHTPSPTAQAGIAIICLSGLAAAWQQRRKGG HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure STASTPSSGVNQPLKGIGFILLATFLFASHDTLSKYLSGFYPIILVVWARYLVHTLLMA CCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CIFMPSAGLRVLRTKRPGLQVLRALALLGTSLLFTSSLMFIPQAEATAVNFLAPLLVTAL HHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH SVPLLHERVTRGQWIAVVVGFVGVMIIIHPGGELFTPAILLPLSSALCFALYQLLTRLVS HHHHHHHHHHCCHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC PFDSPTTSNFFAGLFNTLLMSALVPFFWEVPALKHLPFLLALGACGMSAHLLLTQAFRFA CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH APAMLAPFSYCQIVFAGLLGYLVFDHTPSPTAQAGIAIICLSGLAAAWQQRRKGG HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA