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The map label for this gene is ydhC [H]

Identifier: 66045324

GI number: 66045324

Start: 2429677

End: 2430396

Strand: Direct

Name: ydhC [H]

Synonym: Psyr_2084

Alternate gene names: 66045324

Gene position: 2429677-2430396 (Clockwise)

Preceding gene: 66045319

Following gene: 66045325

Centisome position: 39.87

GC content: 60.0

Gene sequence:

>720_bases
ATGCTGAAGATGGTCGAAAAAACCATGACGGTTGCGGACGACTCGGAAACGCTCTCCGAGAACGTTTTTCGACGTATTCA
ATCGGCCATCGTGAAAGGCGAGATTGCTCCCGGCAGCAAGATTTCCGAGCCGGAACTGGCTCGCACCTATGGCATCAGTC
GCGGGCCGCTGCGCGAAGCGATTCACCGGCTCGAAGGGCAGCGACTGGTGGTTCGCGTGCCGCATGTGGGCGCCCGGGTG
GTCTCGCTCAGTCATGCCGAACTGATCGAACTCTATGAAATTCGCGAGTCACTGGAGGGGATGGCCTGTCGTCTGGCCGC
CGAACGCATGACGCAGGCCGAAATCGATGAGCTGCGCGGCGTTCTGGATACCCACGAGCGCGATGCCGCCTTTCAGGCAG
GTATCGGCTATTACCAGCAGGAGGGTGATTTCGACTTTCACTACCGCATCATTCAGGGCAGCGGCAATCGCACCCTCAGC
CAGATGCTCTGCGGCGAGCTCTACCAGTTGGTGCGCATGTACCGCATTCAGTATTCCACCACGCCCAACCGGCCTCGCCA
GGCCTTTGCCGAACATCACCGCATTCTCGACGCCATCGCCGACCGCGACGGTGAGCTGGCCGAATTGTTGATGCGCCGCC
ATATCGGCGCGTCCAGACGCAACATCGAACGCCACTATCAGGCGGCTTCCCAGACGACTTCCGACCGAGGTAAACAATGA

Upstream 100 bases:

>100_bases
GGTGCGCGTTTTGGCTGATTGTCGACAATGCAGGGTTTTGTTTTGACTGAGTGGCGAAATATGACTAGATTTAAGCGCAT
ATGGTCATGAGGTGTCGACA

Downstream 100 bases:

>100_bases
GTCATGACAACAGCACTCCCGGCCAGCGTTTCCGCGATGCAGTTACCAGCGAGCAGCCGCTGCAAGTGGTCGGCGCGATC
AATGCCAACCACGCACTGCT

Product: transcriptional regulator GntR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MLKMVEKTMTVADDSETLSENVFRRIQSAIVKGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQRLVVRVPHVGARV
VSLSHAELIELYEIRESLEGMACRLAAERMTQAEIDELRGVLDTHERDAAFQAGIGYYQQEGDFDFHYRIIQGSGNRTLS
QMLCGELYQLVRMYRIQYSTTPNRPRQAFAEHHRILDAIADRDGELAELLMRRHIGASRRNIERHYQAASQTTSDRGKQ

Sequences:

>Translated_239_residues
MLKMVEKTMTVADDSETLSENVFRRIQSAIVKGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQRLVVRVPHVGARV
VSLSHAELIELYEIRESLEGMACRLAAERMTQAEIDELRGVLDTHERDAAFQAGIGYYQQEGDFDFHYRIIQGSGNRTLS
QMLCGELYQLVRMYRIQYSTTPNRPRQAFAEHHRILDAIADRDGELAELLMRRHIGASRRNIERHYQAASQTTSDRGKQ
>Mature_239_residues
MLKMVEKTMTVADDSETLSENVFRRIQSAIVKGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQRLVVRVPHVGARV
VSLSHAELIELYEIRESLEGMACRLAAERMTQAEIDELRGVLDTHERDAAFQAGIGYYQQEGDFDFHYRIIQGSGNRTLS
QMLCGELYQLVRMYRIQYSTTPNRPRQAFAEHHRILDAIADRDGELAELLMRRHIGASRRNIERHYQAASQTTSDRGKQ

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=203, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787821, Length=211, Percent_Identity=26.0663507109005, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27237; Mature: 27237

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKMVEKTMTVADDSETLSENVFRRIQSAIVKGEIAPGSKISEPELARTYGISRGPLREA
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHH
IHRLEGQRLVVRVPHVGARVVSLSHAELIELYEIRESLEGMACRLAAERMTQAEIDELRG
HHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLDTHERDAAFQAGIGYYQQEGDFDFHYRIIQGSGNRTLSQMLCGELYQLVRMYRIQYST
HHHHHHHHHHHHHCCCHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC
TPNRPRQAFAEHHRILDAIADRDGELAELLMRRHIGASRRNIERHYQAASQTTSDRGKQ
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLKMVEKTMTVADDSETLSENVFRRIQSAIVKGEIAPGSKISEPELARTYGISRGPLREA
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHH
IHRLEGQRLVVRVPHVGARVVSLSHAELIELYEIRESLEGMACRLAAERMTQAEIDELRG
HHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLDTHERDAAFQAGIGYYQQEGDFDFHYRIIQGSGNRTLSQMLCGELYQLVRMYRIQYST
HHHHHHHHHHHHHCCCHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC
TPNRPRQAFAEHHRILDAIADRDGELAELLMRRHIGASRRNIERHYQAASQTTSDRGKQ
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]