Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
---|---|
Accession | NC_007005 |
Length | 6,093,698 |
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The map label for this gene is kdpB [H]
Identifier: 66045288
GI number: 66045288
Start: 2391814
End: 2393892
Strand: Direct
Name: kdpB [H]
Synonym: Psyr_2048
Alternate gene names: 66045288
Gene position: 2391814-2393892 (Clockwise)
Preceding gene: 66045287
Following gene: 66045289
Centisome position: 39.25
GC content: 63.35
Gene sequence:
>2079_bases ATGAACTTACCTATTAATCCTGCAAAAAATGCTGCTGCGAAATCTACTGAATCGCAGGCCACCGAGTCGGCAAAAACCGG CATCGCCGCCCTGTGGCGTCCGGCGCTGGTGCAGGCGTTCGTCAAGCTCGACCCGCGTCAGCTCAAGCGTTCGCCGGTCA TGCTGGTGGTGGAACTGACCGCCATTCTGACCACCGTGTTGTGCGTGATCCCCAACCCGCAGGTGCCGACTTCGGTTTGC GTGCAGATCGCCCTGTGGCTGTGGTTCACCGTGCTGTTCGCCAACTTCGCCGAAGCGCTGGCCGAAGGCCGCGGCAAGGC CCGCGCCGACAGCCTCAAGGCGGGCAGCGAAGGGCTCAAGGCACGTATCAGGGACGACAATGGCAGCCTGCGCATCATCA ATGCCAGCGAGTTGCGCAAGGGTGATGTGGTGCGCGTCGAGATCGGCGAAATGATTCCCGGTGATGGCGAAGTCATCGAG GGCATCGCGGCGGTCAACGAGGCTGCGATTACCGGCGAATCCGCACCAGTGATCCGCGAATCCGGTGGTGACCGCTCGGC CGTGACCGGCAACACCCGGCTGGTCTCCGACTGGCTGCTGATCCGCATCAGCGCCAACCCCGGCGAGTCGACACTGGACC GCATGATCGCGCTGGTCGAAGGCGCCAAGCGGCAAAAGACCCCCAATGAGGTCGCGCTGGATATTCTGCTGATCGGCCTG ACCCTGATCTTCCTGCTGGTGGTCATCACCTTGCAGCCGTTCGCCCACTTCGCCGGTGGCAGCCTGCCGCTGGTGTTTCT GGTGGCGTTGCTGGTCACGCTGATCCCCACCACCATTGGCGGTCTGCTGTCGGCCATCGGCATTGCCGGCATGGACCGCC TGGTGCGCCTCAATGTGATTGCCAAGTCCGGTCGCGCCGTGGAAGCCGCGGGCGATGTGCATGTGCTGCTGCTGGACAAG ACCGGCACCATCACCTTCGGCAACCGTCGCTGCGCCGCGGTCTACGCTGCACCGGGCGTGACCCCGAAGGAACTGGGCGA GGGTGCTTTGCTGGCCTCGCTGGCCGACGACACGGCAGAAGGCAAATCCATCGTCGAGTTCCTGCGCAATCTGCACCCGA TGAACGAGCCGGCCCTGAGCTCGGTGACTGCCGTGCCGTTCAGCGCTGATACGCGTCTGTCCGGCGTTGATTATCAGGGC CACGTGTACCGCAAGGGTGCAGTGGATTCGCTGTTGGCCTTCATCGACATGCAGCGCAGCGAGCTGCCGCCTGTACTGGC CCGTGAAGTCGACAAGATTGCCAAGACCGGCGGTACGCCGCTGCTGGTCTGCGCCAACGGTCGGTTGCTGGGCGCGATCC ATCTCAAGGACGTGGTCAAGCCGGGTATTCGCGAACGTTTCGAAGAGCTGCGCAAACTGGGTATCCGCACCGTGATGGTC ACCGGCGATAACCCGTTGACTGCCGCAGCGATTGCCGCCGAGGCCGGTGTCGACGACGTTCTGGCTGAAGCCACACCGGA GAAAAAACTGGAGCGGATTCGCCAGGAGCAGGGCGAAGGGCGGCTGGTGGCGATGTGCGGCGACGGTGCCAACGATGCGC CCGCACTGGCCCAGGCCGATGTCGGCATGGCGATGAACGACGGCACTCAGGCGGCACGCGAAGCGGCGAACATGGTTGAC CTCGACAGCGACCCGACCAAGTTGCTGGACGTGGTGCAGATCGGCAAGGAGTTGCTGGTTACCCGCGGTGCGCTGACCAC CTTTTCGATTGCCAACGACGTGGCCAAGTACTTCGCGGTACTGCCTGCGCTGTTTGCCTCGATCTACCCGCAACTGGGTG TGCTCAACGTCATGAAGCTGACCAGCCCGCAGAGCGCGATTGTCTCGGCCATCGTCTTCAACGCGCTGATCATCGTCGTG CTGATCCCGCTGGCCCTGCGCGGCGTGCGTGTACAGGCGGCCAGCGCGGCTCACTTGTTGCGTCGCAACCTGCTGATCTA TGGCCTGGGCGGCATCGTTGTGCCGTTTATCGGCATCAAGCTGATCGACATGCTGCTGGTCGCACTCGGCCTTGTTTGA
Upstream 100 bases:
>100_bases ACCGTCACGATTCTGCTGGTGGGTGGCTTGACCTTCCTGCCGACCCTGGCACTGGGGCCGATTGCCGAACACCTGAGCCT GGGTTTCTGAGGAACCGATC
Downstream 100 bases:
>100_bases AGCCTGTGCTGCATGCCGGTCGGCGTGCAGCCTCACCTGATTGAGGATGTGCAGATGTCCAATGTATTGCGTCCGGCCTT GAGCCTGATCGTGTTGATGA
Product: potassium-transporting ATPase subunit B
Products: NA
Alternate protein names: ATP phosphohydrolase [potassium-transporting] B chain; Potassium-binding and translocating subunit B; Potassium-translocating ATPase B chain [H]
Number of amino acids: Translated: 692; Mature: 692
Protein sequence:
>692_residues MNLPINPAKNAAAKSTESQATESAKTGIAALWRPALVQAFVKLDPRQLKRSPVMLVVELTAILTTVLCVIPNPQVPTSVC VQIALWLWFTVLFANFAEALAEGRGKARADSLKAGSEGLKARIRDDNGSLRIINASELRKGDVVRVEIGEMIPGDGEVIE GIAAVNEAAITGESAPVIRESGGDRSAVTGNTRLVSDWLLIRISANPGESTLDRMIALVEGAKRQKTPNEVALDILLIGL TLIFLLVVITLQPFAHFAGGSLPLVFLVALLVTLIPTTIGGLLSAIGIAGMDRLVRLNVIAKSGRAVEAAGDVHVLLLDK TGTITFGNRRCAAVYAAPGVTPKELGEGALLASLADDTAEGKSIVEFLRNLHPMNEPALSSVTAVPFSADTRLSGVDYQG HVYRKGAVDSLLAFIDMQRSELPPVLAREVDKIAKTGGTPLLVCANGRLLGAIHLKDVVKPGIRERFEELRKLGIRTVMV TGDNPLTAAAIAAEAGVDDVLAEATPEKKLERIRQEQGEGRLVAMCGDGANDAPALAQADVGMAMNDGTQAAREAANMVD LDSDPTKLLDVVQIGKELLVTRGALTTFSIANDVAKYFAVLPALFASIYPQLGVLNVMKLTSPQSAIVSAIVFNALIIVV LIPLALRGVRVQAASAAHLLRRNLLIYGLGGIVVPFIGIKLIDMLLVALGLV
Sequences:
>Translated_692_residues MNLPINPAKNAAAKSTESQATESAKTGIAALWRPALVQAFVKLDPRQLKRSPVMLVVELTAILTTVLCVIPNPQVPTSVC VQIALWLWFTVLFANFAEALAEGRGKARADSLKAGSEGLKARIRDDNGSLRIINASELRKGDVVRVEIGEMIPGDGEVIE GIAAVNEAAITGESAPVIRESGGDRSAVTGNTRLVSDWLLIRISANPGESTLDRMIALVEGAKRQKTPNEVALDILLIGL TLIFLLVVITLQPFAHFAGGSLPLVFLVALLVTLIPTTIGGLLSAIGIAGMDRLVRLNVIAKSGRAVEAAGDVHVLLLDK TGTITFGNRRCAAVYAAPGVTPKELGEGALLASLADDTAEGKSIVEFLRNLHPMNEPALSSVTAVPFSADTRLSGVDYQG HVYRKGAVDSLLAFIDMQRSELPPVLAREVDKIAKTGGTPLLVCANGRLLGAIHLKDVVKPGIRERFEELRKLGIRTVMV TGDNPLTAAAIAAEAGVDDVLAEATPEKKLERIRQEQGEGRLVAMCGDGANDAPALAQADVGMAMNDGTQAAREAANMVD LDSDPTKLLDVVQIGKELLVTRGALTTFSIANDVAKYFAVLPALFASIYPQLGVLNVMKLTSPQSAIVSAIVFNALIIVV LIPLALRGVRVQAASAAHLLRRNLLIYGLGGIVVPFIGIKLIDMLLVALGLV >Mature_692_residues MNLPINPAKNAAAKSTESQATESAKTGIAALWRPALVQAFVKLDPRQLKRSPVMLVVELTAILTTVLCVIPNPQVPTSVC VQIALWLWFTVLFANFAEALAEGRGKARADSLKAGSEGLKARIRDDNGSLRIINASELRKGDVVRVEIGEMIPGDGEVIE GIAAVNEAAITGESAPVIRESGGDRSAVTGNTRLVSDWLLIRISANPGESTLDRMIALVEGAKRQKTPNEVALDILLIGL TLIFLLVVITLQPFAHFAGGSLPLVFLVALLVTLIPTTIGGLLSAIGIAGMDRLVRLNVIAKSGRAVEAAGDVHVLLLDK TGTITFGNRRCAAVYAAPGVTPKELGEGALLASLADDTAEGKSIVEFLRNLHPMNEPALSSVTAVPFSADTRLSGVDYQG HVYRKGAVDSLLAFIDMQRSELPPVLAREVDKIAKTGGTPLLVCANGRLLGAIHLKDVVKPGIRERFEELRKLGIRTVMV TGDNPLTAAAIAAEAGVDDVLAEATPEKKLERIRQEQGEGRLVAMCGDGANDAPALAQADVGMAMNDGTQAAREAANMVD LDSDPTKLLDVVQIGKELLVTRGALTTFSIANDVAKYFAVLPALFASIYPQLGVLNVMKLTSPQSAIVSAIVFNALIIVV LIPLALRGVRVQAASAAHLLRRNLLIYGLGGIVVPFIGIKLIDMLLVALGLV
Specific function: One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions [H]
COG id: COG2216
COG function: function code P; High-affinity K+ transport system, ATPase chain B
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily [H]
Homologues:
Organism=Homo sapiens, GI118498343, Length=572, Percent_Identity=24.8251748251748, Blast_Score=112, Evalue=1e-24, Organism=Homo sapiens, GI48762687, Length=665, Percent_Identity=22.2556390977444, Blast_Score=111, Evalue=2e-24, Organism=Homo sapiens, GI48762689, Length=665, Percent_Identity=22.2556390977444, Blast_Score=111, Evalue=3e-24, Organism=Homo sapiens, GI48762685, Length=665, Percent_Identity=22.2556390977444, Blast_Score=111, Evalue=3e-24, Organism=Homo sapiens, GI48762691, Length=665, Percent_Identity=22.2556390977444, Blast_Score=111, Evalue=3e-24, Organism=Homo sapiens, GI115529486, Length=138, Percent_Identity=44.2028985507246, Blast_Score=110, Evalue=6e-24, Organism=Homo sapiens, GI55743071, Length=136, Percent_Identity=44.8529411764706, Blast_Score=108, Evalue=2e-23, Organism=Homo sapiens, GI55743073, Length=136, Percent_Identity=44.8529411764706, Blast_Score=107, Evalue=5e-23, Organism=Homo sapiens, GI237681111, Length=224, Percent_Identity=24.5535714285714, Blast_Score=70, Evalue=5e-12, Organism=Homo sapiens, GI51944966, Length=204, Percent_Identity=26.9607843137255, Blast_Score=70, Evalue=5e-12, Organism=Homo sapiens, GI21361181, Length=224, Percent_Identity=24.5535714285714, Blast_Score=70, Evalue=6e-12, Organism=Homo sapiens, GI237681109, Length=224, Percent_Identity=24.5535714285714, Blast_Score=70, Evalue=6e-12, Organism=Homo sapiens, GI209413709, Length=187, Percent_Identity=26.2032085561497, Blast_Score=70, Evalue=8e-12, Organism=Homo sapiens, GI24638454, Length=187, Percent_Identity=26.2032085561497, Blast_Score=70, Evalue=9e-12, Organism=Homo sapiens, GI4502285, Length=187, Percent_Identity=26.2032085561497, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI297374799, Length=230, Percent_Identity=24.7826086956522, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI83700225, Length=230, Percent_Identity=24.7826086956522, Blast_Score=69, Evalue=1e-11, Organism=Escherichia coli, GI1786914, Length=676, Percent_Identity=59.9112426035503, Blast_Score=736, Evalue=0.0, Organism=Escherichia coli, GI1786691, Length=440, Percent_Identity=29.0909090909091, Blast_Score=160, Evalue=2e-40, Organism=Escherichia coli, GI1789879, Length=505, Percent_Identity=28.7128712871287, Blast_Score=139, Evalue=5e-34, Organism=Escherichia coli, GI2367363, Length=590, Percent_Identity=24.0677966101695, Blast_Score=87, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17556548, Length=565, Percent_Identity=25.8407079646018, Blast_Score=116, Evalue=5e-26, Organism=Caenorhabditis elegans, GI193210130, Length=184, Percent_Identity=26.0869565217391, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17554158, Length=184, Percent_Identity=26.0869565217391, Blast_Score=74, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71988506, Length=184, Percent_Identity=26.0869565217391, Blast_Score=74, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17559224, Length=227, Percent_Identity=24.6696035242291, Blast_Score=72, Evalue=7e-13, Organism=Saccharomyces cerevisiae, GI6321271, Length=587, Percent_Identity=24.190800681431, Blast_Score=129, Evalue=1e-30, Organism=Saccharomyces cerevisiae, GI6319772, Length=567, Percent_Identity=24.6913580246914, Blast_Score=117, Evalue=9e-27, Organism=Saccharomyces cerevisiae, GI6321430, Length=536, Percent_Identity=25.5597014925373, Blast_Score=112, Evalue=2e-25, Organism=Saccharomyces cerevisiae, GI6325221, Length=553, Percent_Identity=24.9547920433996, Blast_Score=111, Evalue=4e-25, Organism=Saccharomyces cerevisiae, GI6320475, Length=458, Percent_Identity=25.1091703056769, Blast_Score=104, Evalue=5e-23, Organism=Saccharomyces cerevisiae, GI6321432, Length=202, Percent_Identity=29.2079207920792, Blast_Score=80, Evalue=9e-16, Organism=Drosophila melanogaster, GI24668696, Length=643, Percent_Identity=23.1726283048211, Blast_Score=123, Evalue=5e-28, Organism=Drosophila melanogaster, GI281366617, Length=619, Percent_Identity=23.7479806138934, Blast_Score=123, Evalue=6e-28, Organism=Drosophila melanogaster, GI24668708, Length=643, Percent_Identity=23.4836702954899, Blast_Score=122, Evalue=6e-28, Organism=Drosophila melanogaster, GI24668704, Length=619, Percent_Identity=23.7479806138934, Blast_Score=122, Evalue=7e-28, Organism=Drosophila melanogaster, GI161085803, Length=619, Percent_Identity=23.4248788368336, Blast_Score=122, Evalue=7e-28, Organism=Drosophila melanogaster, GI221329854, Length=158, Percent_Identity=41.7721518987342, Blast_Score=109, Evalue=7e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008250 - InterPro: IPR001757 - InterPro: IPR018303 - InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR000150 - InterPro: IPR006391 [H]
Pfam domain/function: PF00122 E1-E2_ATPase; PF00702 Hydrolase [H]
EC number: =3.6.3.12 [H]
Molecular weight: Translated: 73061; Mature: 73061
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: PS00154 ATPASE_E1_E2 ; PS01229 COF_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLPINPAKNAAAKSTESQATESAKTGIAALWRPALVQAFVKLDPRQLKRSPVMLVVELT CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEHHHHH AILTTVLCVIPNPQVPTSVCVQIALWLWFTVLFANFAEALAEGRGKARADSLKAGSEGLK HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCE ARIRDDNGSLRIINASELRKGDVVRVEIGEMIPGDGEVIEGIAAVNEAAITGESAPVIRE EEEECCCCCEEEEEHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC SGGDRSAVTGNTRLVSDWLLIRISANPGESTLDRMIALVEGAKRQKTPNEVALDILLIGL CCCCCCEECCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHH TLIFLLVVITLQPFAHFAGGSLPLVFLVALLVTLIPTTIGGLLSAIGIAGMDRLVRLNVI HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE AKSGRAVEAAGDVHVLLLDKTGTITFGNRRCAAVYAAPGVTPKELGEGALLASLADDTAE CCCCCEEEECCCEEEEEEECCCEEEECCCEEEEEEECCCCCHHHHCCCCEEHHHHCCCCC GKSIVEFLRNLHPMNEPALSSVTAVPFSADTRLSGVDYQGHVYRKGAVDSLLAFIDMQRS HHHHHHHHHHCCCCCCCHHHCEEECCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHH ELPPVLAREVDKIAKTGGTPLLVCANGRLLGAIHLKDVVKPGIRERFEELRKLGIRTVMV CCCCHHHHHHHHHHHCCCCEEEEEECCCEEEEEHHHHHHCHHHHHHHHHHHHCCCEEEEE TGDNPLTAAAIAAEAGVDDVLAEATPEKKLERIRQEQGEGRLVAMCGDGANDAPALAQAD ECCCCCHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHC VGMAMNDGTQAAREAANMVDLDSDPTKLLDVVQIGKELLVTRGALTTFSIANDVAKYFAV CCCEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH LPALFASIYPQLGVLNVMKLTSPQSAIVSAIVFNALIIVVLIPLALRGVRVQAASAAHLL HHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHH RRNLLIYGLGGIVVPFIGIKLIDMLLVALGLV HHHHHEEECHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNLPINPAKNAAAKSTESQATESAKTGIAALWRPALVQAFVKLDPRQLKRSPVMLVVELT CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEHHHHH AILTTVLCVIPNPQVPTSVCVQIALWLWFTVLFANFAEALAEGRGKARADSLKAGSEGLK HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCE ARIRDDNGSLRIINASELRKGDVVRVEIGEMIPGDGEVIEGIAAVNEAAITGESAPVIRE EEEECCCCCEEEEEHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC SGGDRSAVTGNTRLVSDWLLIRISANPGESTLDRMIALVEGAKRQKTPNEVALDILLIGL CCCCCCEECCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHH TLIFLLVVITLQPFAHFAGGSLPLVFLVALLVTLIPTTIGGLLSAIGIAGMDRLVRLNVI HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE AKSGRAVEAAGDVHVLLLDKTGTITFGNRRCAAVYAAPGVTPKELGEGALLASLADDTAE CCCCCEEEECCCEEEEEEECCCEEEECCCEEEEEEECCCCCHHHHCCCCEEHHHHCCCCC GKSIVEFLRNLHPMNEPALSSVTAVPFSADTRLSGVDYQGHVYRKGAVDSLLAFIDMQRS HHHHHHHHHHCCCCCCCHHHCEEECCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHH ELPPVLAREVDKIAKTGGTPLLVCANGRLLGAIHLKDVVKPGIRERFEELRKLGIRTVMV CCCCHHHHHHHHHHHCCCCEEEEEECCCEEEEEHHHHHHCHHHHHHHHHHHHCCCEEEEE TGDNPLTAAAIAAEAGVDDVLAEATPEKKLERIRQEQGEGRLVAMCGDGANDAPALAQAD ECCCCCHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHC VGMAMNDGTQAAREAANMVDLDSDPTKLLDVVQIGKELLVTRGALTTFSIANDVAKYFAV CCCEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH LPALFASIYPQLGVLNVMKLTSPQSAIVSAIVFNALIIVVLIPLALRGVRVQAASAAHLL HHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHH RRNLLIYGLGGIVVPFIGIKLIDMLLVALGLV HHHHHEEECHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]