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The map label for this gene is rnhB [H]

Identifier: 66044605

GI number: 66044605

Start: 1537295

End: 1537951

Strand: Direct

Name: rnhB [H]

Synonym: Psyr_1357

Alternate gene names: 66044605

Gene position: 1537295-1537951 (Clockwise)

Preceding gene: 66044604

Following gene: 66044606

Centisome position: 25.23

GC content: 60.43

Gene sequence:

>657_bases
ATGATGCAAACAGGTCTGGATTTTACCCTCGTCGAGGACCTGGTGGCGGGTGTTGATGAAGTGGGTCGCGGCCCGCTGTG
CGGTGCCGTGGTAACCGCCGCCGTCATTCTCGACCCGACCAGGCCCATTCTCGGTCTCAATGATTCGAAGAAACTGACCG
AAGCCAGGCGCGAAAAGCTCTACGTCGAAATTCAGGAGAAAGCCCTGTGCTGGTTCATCGCCAGGGCTGAAGTCGAAGAG
ATCGACCAGCTGAATATCCTCCACGCCACGATGCTGGCCATGCAGCGCGCCGTCGAAGGGTTGAGTATCACGCCCAGACT
GGCGCTTATCGACGGCAACCGCTGCCCGCAGTTGTCGGTGCCCTCGGCGCCGGTGGTAAAGGGTGACTCCAAGGTACCTG
CCATCGCTGCCGCCTCGATTCTTGCCAAGGTGAGTCGGGATCGGGAAATGGCAGCGTTCGAACTCATCTATCCGGGTTAT
GGCATCGGTGGGCACAAGGGTTATCCTACGCCGGTGCATCTGGAAGCACTGGCCCGGCTCGGGCCGACGCCCATTCATCG
GCGTTCCTTCGCTCCGGTGCGTGCAGCCCATGAAGCGCGCGCAACGATAATGATGGGTGGCTCGATTTCGCCTTCAGTCG
GGTTGCTGCAGGACTGA

Upstream 100 bases:

>100_bases
TTGATGCCATTCACCGGATCCTGCGCCGCGATGCGTCCAATCAGGCCGCCGATGCGGTATTGAGCCTGCTCGGACGGTCG
CCTTCACTGTGAGGTCGCCC

Downstream 100 bases:

>100_bases
CGTTTCACTCCGGGCCAGCTACAATCCTGCCCTTCGTTTTTTGTATTTTCGCGTTTTATAGGATCACCATGCCGGCTTCT
TTCGTTCATCTACGCCTGCA

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MMQTGLDFTLVEDLVAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLYVEIQEKALCWFIARAEVEE
IDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQLSVPSAPVVKGDSKVPAIAAASILAKVSRDREMAAFELIYPGY
GIGGHKGYPTPVHLEALARLGPTPIHRRSFAPVRAAHEARATIMMGGSISPSVGLLQD

Sequences:

>Translated_218_residues
MMQTGLDFTLVEDLVAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLYVEIQEKALCWFIARAEVEE
IDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQLSVPSAPVVKGDSKVPAIAAASILAKVSRDREMAAFELIYPGY
GIGGHKGYPTPVHLEALARLGPTPIHRRSFAPVRAAHEARATIMMGGSISPSVGLLQD
>Mature_218_residues
MMQTGLDFTLVEDLVAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLYVEIQEKALCWFIARAEVEE
IDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQLSVPSAPVVKGDSKVPAIAAASILAKVSRDREMAAFELIYPGY
GIGGHKGYPTPVHLEALARLGPTPIHRRSFAPVRAAHEARATIMMGGSISPSVGLLQD

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=184, Percent_Identity=70.6521739130435, Blast_Score=261, Evalue=2e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 23367; Mature: 23367

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQTGLDFTLVEDLVAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKL
CCCCCCCHHHHHHHHHCHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHE
YVEIQEKALCWFIARAEVEEIDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQLSV
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC
PSAPVVKGDSKVPAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARL
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHC
GPTPIHRRSFAPVRAAHEARATIMMGGSISPSVGLLQD
CCCCCCCCCCCCHHHHHHCCEEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MMQTGLDFTLVEDLVAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKL
CCCCCCCHHHHHHHHHCHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHE
YVEIQEKALCWFIARAEVEEIDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQLSV
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC
PSAPVVKGDSKVPAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARL
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHC
GPTPIHRRSFAPVRAAHEARATIMMGGSISPSVGLLQD
CCCCCCCCCCCCHHHHHHCCEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA